dcicutils 8.14.0.1b19__tar.gz → 8.14.0.1b20__tar.gz

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  1. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/PKG-INFO +1 -1
  2. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/scripts/update_portal_object.py +11 -4
  3. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/pyproject.toml +1 -1
  4. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/LICENSE.txt +0 -0
  5. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/README.rst +0 -0
  6. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/__init__.py +0 -0
  7. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/base.py +0 -0
  8. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/beanstalk_utils.py +0 -0
  9. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/bundle_utils.py +0 -0
  10. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/captured_output.py +0 -0
  11. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/cloudformation_utils.py +0 -0
  12. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/codebuild_utils.py +0 -0
  13. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/command_utils.py +0 -0
  14. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/common.py +0 -0
  15. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/contribution_scripts.py +0 -0
  16. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/contribution_utils.py +0 -0
  17. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/creds_utils.py +0 -0
  18. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/data_readers.py +0 -0
  19. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/data_utils.py +0 -0
  20. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/datetime_utils.py +0 -0
  21. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/deployment_utils.py +0 -0
  22. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/diff_utils.py +0 -0
  23. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/docker_utils.py +0 -0
  24. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/ecr_scripts.py +0 -0
  25. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/ecr_utils.py +0 -0
  26. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/ecs_utils.py +0 -0
  27. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/env_base.py +0 -0
  28. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/env_manager.py +0 -0
  29. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/env_scripts.py +0 -0
  30. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/env_utils.py +0 -0
  31. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/env_utils_legacy.py +0 -0
  32. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/es_utils.py +0 -0
  33. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/exceptions.py +0 -0
  34. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/ff_mocks.py +0 -0
  35. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/ff_utils.py +0 -0
  36. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/file_utils.py +0 -0
  37. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/function_cache_decorator.py +0 -0
  38. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/glacier_utils.py +0 -0
  39. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/hack_for_elasticsearch_numpy_usage.py +0 -0
  40. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/http_utils.py +0 -0
  41. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/jh_utils.py +0 -0
  42. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/kibana/dashboards.json +0 -0
  43. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/kibana/readme.md +0 -0
  44. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/lang_utils.py +0 -0
  45. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
  46. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
  47. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
  48. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
  49. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
  50. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
  51. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/license_utils.py +0 -0
  52. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/log_utils.py +0 -0
  53. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/misc_utils.py +0 -0
  54. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/obfuscation_utils.py +0 -0
  55. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/opensearch_utils.py +0 -0
  56. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/portal_object_utils.py +0 -0
  57. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/portal_utils.py +0 -0
  58. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/progress_bar.py +0 -0
  59. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/project_utils.py +0 -0
  60. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/qa_checkers.py +0 -0
  61. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/qa_utils.py +0 -0
  62. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/redis_tools.py +0 -0
  63. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/redis_utils.py +0 -0
  64. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/s3_utils.py +0 -0
  65. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/schema_utils.py +0 -0
  66. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/scripts/publish_to_pypi.py +0 -0
  67. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/scripts/run_license_checker.py +0 -0
  68. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/scripts/view_portal_object.py +0 -0
  69. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/secrets_utils.py +0 -0
  70. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/sheet_utils.py +0 -0
  71. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/snapshot_utils.py +0 -0
  72. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/ssl_certificate_utils.py +0 -0
  73. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/structured_data.py +0 -0
  74. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/submitr/progress_constants.py +0 -0
  75. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/submitr/ref_lookup_strategy.py +0 -0
  76. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/task_utils.py +0 -0
  77. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/tmpfile_utils.py +0 -0
  78. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/trace_utils.py +0 -0
  79. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/validation_utils.py +0 -0
  80. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/variant_utils.py +0 -0
  81. {dcicutils-8.14.0.1b19 → dcicutils-8.14.0.1b20}/dcicutils/zip_utils.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: dcicutils
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- Version: 8.14.0.1b19
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+ Version: 8.14.0.1b20
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  Summary: Utility package for interacting with the 4DN Data Portal and other 4DN resources
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  Home-page: https://github.com/4dn-dcic/utils
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  License: MIT
@@ -2,9 +2,16 @@
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  # Command-line utility to update (post, patch, upsert) portal objects for SMaHT/CGAP/Fourfront.
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  # ------------------------------------------------------------------------------------------------------
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  # Example commands:
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- # update-portal-object --post file_format.json
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- # update-portal-object --upsert directory-with-schema-named-dot-json-files
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- # update-portal-object --patch file-not-named-for-schema-name.json --schema UnalignedReads
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+ #
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+ # update-portal-object --load {json-file | directory-with-json-files}
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+ # update-portal-object --post {json-file | directory-with-json-files}
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+ # update-portal-object --upsert {json-file | directory-with-json-files}
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+ # update-portal-object --patch {json-file | directory-with-json-files}
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+ #
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+ # The specified json-file or file withing directory-with-jaon-files must be JSON containing either
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+ # a list of objects, which which case the file name for the target schema name, or if not, then
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+ # the --schema option must be used to specified the target schema; or the JSON must be a dictionary
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+ # of schema names, where the value of each is a list of objects for that schema.
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  # --------------------------------------------------------------------------------------------------
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  import argparse
@@ -627,7 +634,7 @@ def _load_data(portal: Portal, load: str, ini_file: str, explicit_schema_name: O
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  _print(f"Total items loaded: {loadxl_total_item_count // 2}" # TODO: straightend out this arithmetic
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  f"{f' (errors: {loadxl_total_error_count})' if loadxl_total_error_count else ''}")
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  for item in sorted(loadxl_summary.keys()):
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- _print(f"▷ {to_camel_case(item)}: {loadxl_summary[item]}")
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+ _print(f"▷ {to_camel_case(item)}: {loadxl_summary[item] // 2}") # TODO: straightend out this arithmetic
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  if loadxl_unresolved:
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  _print("✗ Unresolved references:")
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  for item in loadxl_unresolved:
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "dcicutils"
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- version = "8.14.0.1b19" # TODO: To become 8.14.1
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+ version = "8.14.0.1b20" # TODO: To become 8.14.1
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  description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
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  authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
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  license = "MIT"