dcicutils 8.13.3.1b17__tar.gz → 8.13.3.1b19__tar.gz
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- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/PKG-INFO +1 -1
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/structured_data.py +13 -1
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/pyproject.toml +1 -1
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/LICENSE.txt +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/README.rst +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/__init__.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/base.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/beanstalk_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/bundle_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/captured_output.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/cloudformation_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/codebuild_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/command_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/common.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/contribution_scripts.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/contribution_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/creds_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/data_readers.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/data_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/datetime_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/deployment_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/diff_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/docker_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/ecr_scripts.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/ecr_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/ecs_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/env_base.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/env_manager.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/env_scripts.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/env_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/env_utils_legacy.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/es_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/exceptions.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/ff_mocks.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/ff_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/file_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/function_cache_decorator.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/glacier_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/hack_for_elasticsearch_numpy_usage.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/http_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/jh_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/kibana/dashboards.json +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/kibana/readme.md +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/lang_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/license_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/log_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/misc_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/obfuscation_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/opensearch_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/portal_object_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/portal_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/progress_bar.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/project_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/qa_checkers.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/qa_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/redis_tools.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/redis_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/s3_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/schema_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/scripts/publish_to_pypi.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/scripts/run_license_checker.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/scripts/update_portal_object.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/scripts/view_portal_object.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/secrets_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/sheet_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/snapshot_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/ssl_certificate_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/submitr/progress_constants.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/submitr/ref_lookup_strategy.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/task_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/tmpfile_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/trace_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/validation_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/variant_utils.py +0 -0
- {dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/zip_utils.py +0 -0
@@ -380,7 +380,7 @@ class StructuredDataSet:
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structured_row = structured_row_template.create_row()
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for column_name, value in row.items():
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if self._validator_hook:
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-
value, validator_error = self._validator_hook(reader.sheet_name, column_name, value)
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+
value, validator_error = self._validator_hook(self, reader.sheet_name, column_name, value)
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if validator_error:
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self._note_error({
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"src": create_dict(type=schema_name, row=reader.row_number),
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@@ -531,6 +531,18 @@ class StructuredDataSet:
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issues[group] = []
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issues[group].extend(item)
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def note_validation_error(self, validation_error: str,
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schema_name: Optional[str] = None, row_number: Optional[int] = None) -> None:
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if isinstance(validation_error, str) and validation_error:
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if isinstance(schema_name, str) and schema_name:
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if isinstance(row_number, int):
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src = create_dict(type=schema_name, row=row_number)
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else:
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src = create_dict(type=schema_name)
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else:
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src = None
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self._note_error({"src": src, "error": validation_error}, "validation")
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class _StructuredRowTemplate:
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@@ -1,6 +1,6 @@
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[tool.poetry]
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name = "dcicutils"
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version = "8.13.3.
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version = "8.13.3.1b19" # TODO: To become 8.14.0
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description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
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authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
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license = "MIT"
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{dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/hack_for_elasticsearch_numpy_usage.py
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{dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/license_policies/c4-infrastructure.jsonc
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{dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/license_policies/park-lab-common.jsonc
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{dcicutils-8.13.3.1b17 → dcicutils-8.13.3.1b19}/dcicutils/license_policies/park-lab-pipeline.jsonc
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