dcicutils 8.12.0__tar.gz → 8.12.0.1b3__tar.gz

Sign up to get free protection for your applications and to get access to all the features.
Files changed (79) hide show
  1. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/PKG-INFO +5 -5
  2. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/scripts/publish_to_pypi.py +1 -1
  3. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/pyproject.toml +8 -6
  4. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/LICENSE.txt +0 -0
  5. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/README.rst +0 -0
  6. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/__init__.py +0 -0
  7. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/base.py +0 -0
  8. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/beanstalk_utils.py +0 -0
  9. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/bundle_utils.py +0 -0
  10. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/captured_output.py +0 -0
  11. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/cloudformation_utils.py +0 -0
  12. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/codebuild_utils.py +0 -0
  13. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/command_utils.py +0 -0
  14. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/common.py +0 -0
  15. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/contribution_scripts.py +0 -0
  16. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/contribution_utils.py +0 -0
  17. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/creds_utils.py +0 -0
  18. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/data_readers.py +0 -0
  19. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/data_utils.py +0 -0
  20. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/datetime_utils.py +0 -0
  21. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/deployment_utils.py +0 -0
  22. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/diff_utils.py +0 -0
  23. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/docker_utils.py +0 -0
  24. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/ecr_scripts.py +0 -0
  25. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/ecr_utils.py +0 -0
  26. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/ecs_utils.py +0 -0
  27. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/env_base.py +0 -0
  28. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/env_manager.py +0 -0
  29. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/env_scripts.py +0 -0
  30. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/env_utils.py +0 -0
  31. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/env_utils_legacy.py +0 -0
  32. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/es_utils.py +0 -0
  33. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/exceptions.py +0 -0
  34. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/ff_mocks.py +0 -0
  35. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/ff_utils.py +0 -0
  36. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/file_utils.py +0 -0
  37. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/function_cache_decorator.py +0 -0
  38. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/glacier_utils.py +0 -0
  39. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/http_utils.py +0 -0
  40. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/jh_utils.py +0 -0
  41. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/kibana/dashboards.json +0 -0
  42. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/kibana/readme.md +0 -0
  43. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/lang_utils.py +0 -0
  44. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
  45. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
  46. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
  47. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
  48. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
  49. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
  50. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/license_utils.py +0 -0
  51. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/log_utils.py +0 -0
  52. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/misc_utils.py +0 -0
  53. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/obfuscation_utils.py +0 -0
  54. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/opensearch_utils.py +0 -0
  55. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/portal_object_utils.py +0 -0
  56. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/portal_utils.py +0 -0
  57. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/progress_bar.py +0 -0
  58. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/project_utils.py +0 -0
  59. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/qa_checkers.py +0 -0
  60. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/qa_utils.py +0 -0
  61. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/redis_tools.py +0 -0
  62. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/redis_utils.py +0 -0
  63. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/s3_utils.py +0 -0
  64. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/schema_utils.py +0 -0
  65. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/scripts/run_license_checker.py +0 -0
  66. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/scripts/view_portal_object.py +0 -0
  67. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/secrets_utils.py +0 -0
  68. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/sheet_utils.py +0 -0
  69. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/snapshot_utils.py +0 -0
  70. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/ssl_certificate_utils.py +0 -0
  71. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/structured_data.py +0 -0
  72. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/submitr/progress_constants.py +0 -0
  73. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/submitr/ref_lookup_strategy.py +0 -0
  74. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/task_utils.py +0 -0
  75. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/tmpfile_utils.py +0 -0
  76. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/trace_utils.py +0 -0
  77. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/validation_utils.py +0 -0
  78. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/variant_utils.py +0 -0
  79. {dcicutils-8.12.0 → dcicutils-8.12.0.1b3}/dcicutils/zip_utils.py +0 -0
@@ -1,24 +1,24 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: dcicutils
3
- Version: 8.12.0
3
+ Version: 8.12.0.1b3
4
4
  Summary: Utility package for interacting with the 4DN Data Portal and other 4DN resources
5
5
  Home-page: https://github.com/4dn-dcic/utils
6
6
  License: MIT
7
7
  Author: 4DN-DCIC Team
8
8
  Author-email: support@4dnucleome.org
9
- Requires-Python: >=3.8,<3.13
9
+ Requires-Python: >=3.8.1,<3.13
10
10
  Classifier: Development Status :: 4 - Beta
11
11
  Classifier: Intended Audience :: Developers
12
12
  Classifier: Intended Audience :: Science/Research
13
13
  Classifier: License :: OSI Approved :: MIT License
14
14
  Classifier: Programming Language :: Python :: 3
15
- Classifier: Programming Language :: Python :: 3.8
16
15
  Classifier: Programming Language :: Python :: 3.9
17
16
  Classifier: Programming Language :: Python :: 3.10
18
17
  Classifier: Programming Language :: Python :: 3.11
19
18
  Classifier: Programming Language :: Python :: 3
20
19
  Classifier: Programming Language :: Python :: 3.10
21
20
  Classifier: Programming Language :: Python :: 3.11
21
+ Classifier: Programming Language :: Python :: 3.12
22
22
  Classifier: Programming Language :: Python :: 3.8
23
23
  Classifier: Programming Language :: Python :: 3.9
24
24
  Classifier: Topic :: Database :: Database Engines/Servers
@@ -30,7 +30,7 @@ Requires-Dist: boto3 (>=1.34.93,<2.0.0)
30
30
  Requires-Dist: botocore (>=1.34.93,<2.0.0)
31
31
  Requires-Dist: chardet (>=5.2.0,<6.0.0)
32
32
  Requires-Dist: docker (>=4.4.4,<5.0.0)
33
- Requires-Dist: elasticsearch (==7.13.4)
33
+ Requires-Dist: elasticsearch (>=7.17.9,<8.0.0)
34
34
  Requires-Dist: gitpython (>=3.1.2,<4.0.0)
35
35
  Requires-Dist: jsonc-parser (>=1.1.5,<2.0.0)
36
36
  Requires-Dist: jsonschema (>=4.19.0,<5.0.0)
@@ -38,7 +38,7 @@ Requires-Dist: openpyxl (>=3.1.2,<4.0.0)
38
38
  Requires-Dist: opensearch-py (>=2.0.1,<3.0.0)
39
39
  Requires-Dist: pyOpenSSL (>=23.1.1,<24.0.0)
40
40
  Requires-Dist: pyperclip (>=1.8.2,<2.0.0)
41
- Requires-Dist: pyramid (==1.10.4)
41
+ Requires-Dist: pyramid (>=2.0.2,<3.0.0)
42
42
  Requires-Dist: pytz (>=2020.4)
43
43
  Requires-Dist: redis (>=4.5.1,<5.0.0)
44
44
  Requires-Dist: requests (>=2.21.0,<3.0.0)
@@ -203,7 +203,7 @@ def verify_untracked_files() -> bool:
203
203
  untracked_files = get_untracked_files()
204
204
  if untracked_files:
205
205
  PRINT(f"You are about to PUBLISH the following ({len(untracked_files)})"
206
- f" UNTRACKED file{'' if len(untracked_files) == 1 else 's' } -> SECURITY risk:")
206
+ f" UNTRACKED file{'' if len(untracked_files) == 1 else 's'} -> SECURITY risk:")
207
207
  for untracked_file in untracked_files:
208
208
  PRINT(f"-- {untracked_file}")
209
209
  PRINT("DO NOT continue UNLESS you KNOW what you are doing!")
@@ -1,6 +1,6 @@
1
1
  [tool.poetry]
2
2
  name = "dcicutils"
3
- version = "8.12.0"
3
+ version = "8.12.0.1b3" # TODO: To become 8.13.0
4
4
  description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
5
5
  authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
6
6
  license = "MIT"
@@ -32,17 +32,19 @@ classifiers = [
32
32
  'Programming Language :: Python :: 3.8',
33
33
  'Programming Language :: Python :: 3.9',
34
34
  'Programming Language :: Python :: 3.10',
35
- 'Programming Language :: Python :: 3.11'
35
+ 'Programming Language :: Python :: 3.11',
36
+ 'Programming Language :: Python :: 3.12'
36
37
  ]
37
38
 
38
39
 
39
40
  [tool.poetry.dependencies]
40
- python = ">=3.8,<3.13"
41
+ python = ">=3.8.1,<3.13"
41
42
  boto3 = "^1.34.93"
42
43
  botocore = "^1.34.93"
43
44
  # The DCIC portals (cgap-portal and fourfront) are very particular about which ElasticSearch version.
44
45
  # This value is intentionally pinned and must not be changed casually.
45
- elasticsearch = "7.13.4"
46
+ #elasticsearch = "7.13.4"
47
+ elasticsearch = "^7.17.9"
46
48
  appdirs = "^1.4.4"
47
49
  aws-requests-auth = ">=0.4.2,<1"
48
50
  chardet = "^5.2.0"
@@ -54,7 +56,7 @@ openpyxl = "^3.1.2"
54
56
  opensearch-py = "^2.0.1"
55
57
  pyOpenSSL = "^23.1.1"
56
58
  PyJWT = "^2.6.0"
57
- pyramid = "1.10.4"
59
+ pyramid = "^2.0.2"
58
60
  pytz = ">=2020.4"
59
61
  redis = "^4.5.1"
60
62
  pyperclip = "^1.8.2"
@@ -77,7 +79,7 @@ coverage = ">=7.2.3"
77
79
  # Loaded manually in GA workflow for coverage because a dependency on 2to3
78
80
  # in its docopts dependency makes a problem for laoding it here in poetry. -kmp 7-Apr-2023
79
81
  # coveralls = ">=3.3.1"
80
- flake8 = ">=3.9.2"
82
+ flake8 = "^7.1.0"
81
83
  flaky = ">=3.7.0"
82
84
  pip-licenses = "^4.3.3"
83
85
  pytest = "^7.4.2"
File without changes
File without changes