dcicutils 8.12.0.1b10__tar.gz → 8.13.0.1b1__tar.gz

Sign up to get free protection for your applications and to get access to all the features.
Files changed (80) hide show
  1. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/PKG-INFO +1 -1
  2. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/es_utils.py +1 -0
  3. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/ff_utils.py +1 -0
  4. dcicutils-8.13.0.1b1/dcicutils/hack_for_elasticsearch_numpy_usage.py +10 -0
  5. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/snapshot_utils.py +1 -0
  6. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/pyproject.toml +1 -1
  7. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/LICENSE.txt +0 -0
  8. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/README.rst +0 -0
  9. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/__init__.py +0 -0
  10. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/base.py +0 -0
  11. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/beanstalk_utils.py +0 -0
  12. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/bundle_utils.py +0 -0
  13. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/captured_output.py +0 -0
  14. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/cloudformation_utils.py +0 -0
  15. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/codebuild_utils.py +0 -0
  16. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/command_utils.py +0 -0
  17. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/common.py +0 -0
  18. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/contribution_scripts.py +0 -0
  19. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/contribution_utils.py +0 -0
  20. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/creds_utils.py +0 -0
  21. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/data_readers.py +0 -0
  22. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/data_utils.py +0 -0
  23. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/datetime_utils.py +0 -0
  24. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/deployment_utils.py +0 -0
  25. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/diff_utils.py +0 -0
  26. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/docker_utils.py +0 -0
  27. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/ecr_scripts.py +0 -0
  28. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/ecr_utils.py +0 -0
  29. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/ecs_utils.py +0 -0
  30. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/env_base.py +0 -0
  31. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/env_manager.py +0 -0
  32. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/env_scripts.py +0 -0
  33. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/env_utils.py +0 -0
  34. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/env_utils_legacy.py +0 -0
  35. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/exceptions.py +0 -0
  36. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/ff_mocks.py +0 -0
  37. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/file_utils.py +0 -0
  38. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/function_cache_decorator.py +0 -0
  39. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/glacier_utils.py +0 -0
  40. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/http_utils.py +0 -0
  41. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/jh_utils.py +0 -0
  42. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/kibana/dashboards.json +0 -0
  43. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/kibana/readme.md +0 -0
  44. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/lang_utils.py +0 -0
  45. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
  46. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
  47. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
  48. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
  49. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
  50. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
  51. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/license_utils.py +0 -0
  52. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/log_utils.py +0 -0
  53. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/misc_utils.py +0 -0
  54. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/obfuscation_utils.py +0 -0
  55. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/opensearch_utils.py +0 -0
  56. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/portal_object_utils.py +0 -0
  57. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/portal_utils.py +0 -0
  58. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/progress_bar.py +0 -0
  59. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/project_utils.py +0 -0
  60. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/qa_checkers.py +0 -0
  61. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/qa_utils.py +0 -0
  62. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/redis_tools.py +0 -0
  63. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/redis_utils.py +0 -0
  64. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/s3_utils.py +0 -0
  65. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/schema_utils.py +0 -0
  66. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/scripts/publish_to_pypi.py +0 -0
  67. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/scripts/run_license_checker.py +0 -0
  68. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/scripts/view_portal_object.py +0 -0
  69. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/secrets_utils.py +0 -0
  70. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/sheet_utils.py +0 -0
  71. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/ssl_certificate_utils.py +0 -0
  72. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/structured_data.py +0 -0
  73. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/submitr/progress_constants.py +0 -0
  74. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/submitr/ref_lookup_strategy.py +0 -0
  75. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/task_utils.py +0 -0
  76. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/tmpfile_utils.py +0 -0
  77. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/trace_utils.py +0 -0
  78. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/validation_utils.py +0 -0
  79. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/variant_utils.py +0 -0
  80. {dcicutils-8.12.0.1b10 → dcicutils-8.13.0.1b1}/dcicutils/zip_utils.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: dcicutils
3
- Version: 8.12.0.1b10
3
+ Version: 8.13.0.1b1
4
4
  Summary: Utility package for interacting with the 4DN Data Portal and other 4DN resources
5
5
  Home-page: https://github.com/4dn-dcic/utils
6
6
  License: MIT
@@ -1,6 +1,7 @@
1
1
  import logging
2
2
  import boto3
3
3
  from .misc_utils import PRINT
4
+ import dcicutils.hack_for_elasticsearch_numpy_usage # noqa
4
5
  from elasticsearch import Elasticsearch, RequestsHttpConnection
5
6
  from aws_requests_auth.boto_utils import BotoAWSRequestsAuth
6
7
 
@@ -7,6 +7,7 @@ import requests
7
7
  import time
8
8
 
9
9
  from collections import namedtuple
10
+ import dcicutils.hack_for_elasticsearch_numpy_usage # noqa
10
11
  from elasticsearch.exceptions import AuthorizationException
11
12
  from typing import Dict, List, Optional
12
13
  from urllib.parse import parse_qs, urlencode, urlparse, urlunparse
@@ -0,0 +1,10 @@
1
+ # Though dcicutils is not dependent on numpy, elasticsearch pulls it in iff it is installed,
2
+ # and if it is numpy 2.x the numpy.float_ constant has been retired and any reference to it
3
+ # yields an error from numpy (AttributeError: np.float_ was removed in the NumPy 2.0 release.
4
+ # Use np.float64 instead); this reference to numpy.float_ occurs in elasticsearch/serializer.py.
5
+ # and we short-circuit it here by explicitly setting numpy.float_ to numpyh.float64.
6
+ try:
7
+ import numpy
8
+ numpy.float_ = numpy.float64
9
+ except Exception:
10
+ pass
@@ -1,6 +1,7 @@
1
1
  import datetime
2
2
  import logging
3
3
 
4
+ import dcicutils.hack_for_elasticsearch_numpy_usage # noqa
4
5
  from elasticsearch.exceptions import NotFoundError
5
6
  from .misc_utils import (
6
7
  environ_bool, PRINT, camel_case_to_snake_case, full_object_name,
@@ -1,6 +1,6 @@
1
1
  [tool.poetry]
2
2
  name = "dcicutils"
3
- version = "8.12.0.1b10" # TODO: To become 8.13.0
3
+ version = "8.13.0.1b1" # TODO: To become 8.13.1
4
4
  description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
5
5
  authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
6
6
  license = "MIT"