dcicutils 8.10.0.1b2__tar.gz → 8.10.0.1b3__tar.gz
Sign up to get free protection for your applications and to get access to all the features.
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/PKG-INFO +1 -1
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/structured_data.py +4 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/pyproject.toml +1 -1
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/LICENSE.txt +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/README.rst +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/__init__.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/base.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/beanstalk_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/bundle_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/captured_output.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/cloudformation_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/codebuild_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/command_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/common.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/contribution_scripts.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/contribution_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/creds_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/data_readers.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/data_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/datetime_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/deployment_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/diff_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/docker_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/ecr_scripts.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/ecr_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/ecs_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/env_base.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/env_manager.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/env_scripts.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/env_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/env_utils_legacy.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/es_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/exceptions.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/ff_mocks.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/ff_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/file_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/function_cache_decorator.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/glacier_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/http_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/jh_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/kibana/dashboards.json +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/kibana/readme.md +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/lang_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/license_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/log_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/misc_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/obfuscation_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/opensearch_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/portal_object_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/portal_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/progress_bar.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/project_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/qa_checkers.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/qa_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/redis_tools.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/redis_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/s3_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/schema_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/scripts/publish_to_pypi.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/scripts/run_license_checker.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/scripts/view_portal_object.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/secrets_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/sheet_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/snapshot_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/ssl_certificate_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/submitr/progress_constants.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/submitr/ref_lookup_strategy.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/task_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/tmpfile_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/trace_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/validation_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/variant_utils.py +0 -0
- {dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/zip_utils.py +0 -0
@@ -57,6 +57,7 @@ class StructuredDataSet:
|
|
57
57
|
ref_lookup_nocache: bool = False,
|
58
58
|
norefs: bool = False, merge: bool = False,
|
59
59
|
progress: Optional[Callable] = None,
|
60
|
+
row_reader_hook: Optional[Callable] = None,
|
60
61
|
debug_sleep: Optional[str] = None) -> None:
|
61
62
|
self._progress = progress if callable(progress) else None
|
62
63
|
self._data = {}
|
@@ -75,6 +76,7 @@ class StructuredDataSet:
|
|
75
76
|
self._autoadd_properties = autoadd if isinstance(autoadd, dict) and autoadd else None
|
76
77
|
self._norefs = True if norefs is True else False
|
77
78
|
self._merge = True if merge is True else False # New merge functionality (2024-05-25)
|
79
|
+
self._row_reader_hook = row_reader_hook if callable(row_reader_hook) else None # Testing support (2024-06-12)
|
78
80
|
self._debug_sleep = None
|
79
81
|
if debug_sleep:
|
80
82
|
try:
|
@@ -377,6 +379,8 @@ class StructuredDataSet:
|
|
377
379
|
structured_row_template = _StructuredRowTemplate(reader.header, schema)
|
378
380
|
structured_row = structured_row_template.create_row()
|
379
381
|
for column_name, value in row.items():
|
382
|
+
if self._row_reader_hook:
|
383
|
+
value = self._row_reader_hook(reader.sheet_name, column_name, value)
|
380
384
|
structured_row_template.set_value(structured_row, column_name, value, reader.file, reader.row_number)
|
381
385
|
if self._autoadd_properties:
|
382
386
|
self._add_properties(structured_row, self._autoadd_properties, schema)
|
@@ -1,6 +1,6 @@
|
|
1
1
|
[tool.poetry]
|
2
2
|
name = "dcicutils"
|
3
|
-
version = "8.10.0.
|
3
|
+
version = "8.10.0.1b3" # TODO: To become 8.10.1
|
4
4
|
description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
|
5
5
|
authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
|
6
6
|
license = "MIT"
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
{dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/license_policies/c4-infrastructure.jsonc
RENAMED
File without changes
|
File without changes
|
File without changes
|
{dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/license_policies/park-lab-common.jsonc
RENAMED
File without changes
|
{dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc
RENAMED
File without changes
|
{dcicutils-8.10.0.1b2 → dcicutils-8.10.0.1b3}/dcicutils/license_policies/park-lab-pipeline.jsonc
RENAMED
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|