dcat-ap-plus 0.1.0rc1__tar.gz

dcat_ap_plus-0.1.0rc1/.copier-answers.yml

@@ -0,0 +1,23 @@
+# Changes here will be overwritten by Copier
+_commit: v0.4.1
+_src_path: https://github.com/linkml/linkml-project-copier
+add_example: true
+copyright_year: '2025'
+email: philip.stroemert@tib.eu
+full_name: Philip Strömert
+gh_action_docs_preview: true
+gh_action_pypi: true
+github_org: nfdi-de
+license: MIT
+project_description: "This metadata schema is an Extension of the DCAT Application\
+    \ Profile for Providing Links to Use-case Specific Context. It allows to provide\
+    \ additional metadata regarding: which kind(s) of entity(s) or activity(s)\
+    \ were evaluated (the dcat:Dataset is about), which kind of activity generated\
+    \ the dcat:Dataset, which kind of instruments were used in the dataset generating\
+    \ activity, in which surrounding (e.g. a laboratory) and according to which\
+    \ plan the dataset generating activity took place, as well as regarding which\
+    \ kind(s) of qualitative and quantitative characteristic were attributed to\
+    \ the evaluated entity or evaluated activity and to the used instruments."
+project_name: dcat-ap-plus
+project_slug: dcat_ap_plus
+

dcat_ap_plus-0.1.0rc1/.editorconfig

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+# Check http://editorconfig.org for more information
+# This is the main config file for this project:
+root = true
+
+[*]
+charset = utf-8
+end_of_line = lf
+insert_final_newline = true
+indent_style = space
+indent_size = 2
+trim_trailing_whitespace = true
+
+[*.py]
+indent_style = space
+indent_size = 4
+
+[*.md]
+trim_trailing_whitespace = false

dcat_ap_plus-0.1.0rc1/.github/dependabot.yml

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+# Please see the documentation for all configuration options:
+# https://docs.github.com/en/code-security/dependabot/working-with-dependabot/dependabot-options-reference
+
+version: 2
+updates:
+  - package-ecosystem: github-actions
+    directory: "/"
+    schedule:
+      interval: monthly

dcat_ap_plus-0.1.0rc1/.github/workflows/deploy-docs.yaml

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+---
+name: Deploy docs
+on:  # yamllint disable-line rule:truthy
+  push:
+    branches: [main]
+  workflow_dispatch:
+
+permissions: {}
+
+jobs:
+  build-docs:
+    # Only run in the canonical repository to avoid failures on forks
+    if: ${{ github.repository == 'nfdi-de/dcat-ap-plus' }}
+    runs-on: ubuntu-latest
+
+    # Grant GITHUB_TOKEN the permissions required to make a gh-pages deployment
+    permissions:
+      contents: write  # to let mkdocs write the new docs
+      pages: write     # to deploy to Pages
+      id-token: write  # allow to generate an OpenID Connect (OIDC) token
+
+    steps:
+      # https://github.com/actions/checkout
+      - name: Checkout
+        uses: actions/checkout@v5.0.0
+        with:
+          fetch-depth: 0  # otherwise, you will fail to push refs to dest repo
+
+      - name: Configure git for the bot
+        # Gives the bot that commits to gh-pages a name & email address
+        # so that the commits have an author in the commit log.
+        run: |
+          git config user.name github-actions[bot]
+          git config user.email github-actions[bot]@users.noreply.github.com
+
+      # https://github.com/astral-sh/setup-uv
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7.1.2
+        with:
+          python-version: 3.13
+          enable-cache: true
+          cache-dependency-glob: "uv.lock"
+
+      # https://github.com/actions/setup-python
+      - name: Set up Python
+        uses: actions/setup-python@v6.0.0
+        with:
+          python-version: 3.13
+
+      - name: Install just
+        run: |
+          uv tool install rust-just
+
+      - name: Install dependencies
+        run: uv sync --dev --no-progress
+
+      - name: Generate schema documentation
+        run: |
+          just gen-doc
+          # copy the schema files to the GH pages as a means of publishing them
+          cp src/dcat_ap_plus/schema/*.yaml docs/
+          uv run mkdocs gh-deploy

dcat_ap_plus-0.1.0rc1/.github/workflows/main.yaml

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+# Built from:
+# https://docs.github.com/en/actions/guides/building-and-testing-python
+---
+name: Build and test
+
+on:  # yamllint disable-line rule:truthy
+  push:
+    branches: [main]
+  pull_request:
+
+env:
+  FORCE_COLOR: "1" # Make tools pretty.
+
+permissions: {}
+
+jobs:
+  test:
+
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
+      fail-fast: false
+
+    steps:
+
+      # https://github.com/actions/checkout
+      - name: Check out repository
+        uses: actions/checkout@v5.0.0
+        with:
+          persist-credentials: false
+
+      # https://github.com/astral-sh/setup-uv
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7.1.2
+        with:
+          python-version: ${{ matrix.python-version }}
+          enable-cache: true
+          cache-dependency-glob: "uv.lock"
+
+      # https://github.com/actions/setup-python
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v6.0.0
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install just
+        run: |
+          uv tool install rust-just
+
+      - name: Install project
+        run: uv sync --dev
+
+      - name: Run test suite
+        run: just test

dcat_ap_plus-0.1.0rc1/.github/workflows/pypi-publish.yaml

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+---
+name: Publish Python Package
+
+# Publishes with trusted publishing to
+# - PyPI on releases created in GitHub UI if status is published.
+#   For draft status, nothing happens.
+# - TestPyPI on new tags "v1.2.3" or "v1.2.3.something" on main branch
+#
+# More on trusted publishing: https://docs.pypi.org/trusted-publishers/
+
+on:  # yamllint disable-line rule:truthy
+  push:
+    tags:
+      # GitHub glob matching is limited [1]. So we can't define a pattern matching
+      # pep 440 version definition [N!]N(.N)*[{a|b|rc}N][.postN][.devN]
+      - 'v[0-9]+.[0-9]+.[0-9]+.?*'
+      - 'v[0-9]+.[0-9]+.[0-9]+rc[0-9]'
+  release:
+    types: [published]
+
+permissions: {}
+
+jobs:
+  build:
+    name: Build Python 🐍 distributions 📦 for publishing
+    runs-on: ubuntu-latest
+
+    steps:
+      # https://github.com/actions/checkout
+      - name: Check out repository
+        uses: actions/checkout@v5.0.0
+        with:
+          persist-credentials: false
+
+      # https://github.com/astral-sh/setup-uv
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7.1.2
+        with:
+          python-version: 3.13
+          enable-cache: true
+
+      # https://github.com/actions/setup-python
+      - name: Set up Python
+        uses: actions/setup-python@v6.0.0
+        with:
+          python-version: 3.13
+
+      - name: Install just
+        run: |
+          uv tool install rust-just
+
+      - name: Build source and wheel archives
+        run: uv build
+
+      # https://github.com/actions/upload-artifact
+      - name: Store built distribution
+        uses: actions/upload-artifact@v5.0.0
+        with:
+          name: distribution-files
+          path: dist/
+
+  pypi-publish:
+    name: Build and publish Python 🐍 package 📦 to PyPI and TestPyPI
+    needs: build
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi-release
+      url: https://pypi.org/p/dcat_ap_plus
+    permissions:
+      id-token: write  # this permission is mandatory for trusted publishing
+    steps:
+      # https://github.com/actions/download-artifact
+      - name: Download built distribution
+        uses: actions/download-artifact@v6.0.0
+        with:
+          name: distribution-files
+          path: dist
+
+      # https://github.com/pypa/gh-action-pypi-publish
+      - name: Publish package 📦 to Test PyPI
+        if: github.event_name == 'push'
+        uses: pypa/gh-action-pypi-publish@v1.13.0
+        with:
+          repository-url: https://test.pypi.org/legacy/
+          verbose: true
+
+      - name: Publish package 📦 to PyPI
+        if: github.event_name == 'release'
+        uses: pypa/gh-action-pypi-publish@v1.13.0
+        with:
+          verbose: true
+
+# [1] https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#filter-pattern-cheat-sheet
+# Used actions: (updates managed by dependabot)
+# - https://github.com/actions/checkout
+# - https://github.com/astral-sh/setup-uv
+# - https://github.com/actions/setup-python
+# - https://github.com/actions/upload-artifact
+# - https://github.com/actions/download-artifact
+# - https://github.com/pypa/gh-action-pypi-publish/

dcat_ap_plus-0.1.0rc1/.github/workflows/test_pages_build.yaml

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+name: Preview documentation build
+
+on:  # yamllint disable-line rule:truthy
+  pull_request:
+    types:
+      - opened
+      - reopened
+      - synchronize
+
+env:
+  CLICOLOR: 1
+
+concurrency: preview-${{ github.ref }}
+
+permissions: {}
+
+jobs:
+  run:
+    # Grant GITHUB_TOKEN the permissions required to make a gh-pages deployment
+    permissions:
+      contents: write  # to let mkdocs write the new docs
+      pages: write     # to deploy to Pages
+      id-token: write  # allow to generate an OpenID Connect (OIDC) token
+      pull-requests: write  # add comment on the PR with the preview URL
+    runs-on: ubuntu-latest
+    steps:
+      # https://github.com/actions/checkout
+      - name: Checkout
+        uses: actions/checkout@v5.0.0
+        with:
+          fetch-depth: 0
+
+      # https://github.com/astral-sh/setup-uv
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7.1.2
+        with:
+          python-version: 3.13
+          enable-cache: true
+          cache-dependency-glob: "uv.lock"
+
+      # https://github.com/actions/setup-python
+      - name: Set up Python 3
+        uses: actions/setup-python@v6.0.0
+        with:
+          python-version: 3.13
+
+      - name: Install dependencies
+        run: uv sync --dev --no-progress
+
+      - name: Build documentation
+        run: |
+          uv run mkdocs build -d site
+          touch site/.nojekyll
+
+      # https://github.com/rossjrw/pr-preview-action
+      - name: Deploy preview
+        uses: rossjrw/pr-preview-action@v1.6.2
+        with:
+          source-dir: site/
+          preview-branch: gh-pages

dcat_ap_plus-0.1.0rc1/.gitignore

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+# generated part of documentation
+/docs/elements/*.md
+# linkml-run-examples output (not useful to have in git in its current form)
+/examples/output/
+
+# Derived schemas, generated from the schema.yaml
+tmp/
+#project/
+!project/README.md
+
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pycharm
+.idea
+# Local vscode editor config
+.vscode

dcat_ap_plus-0.1.0rc1/.pre-commit-config.yaml

@@ -0,0 +1,45 @@
+---
+# https://pre-commit.com/
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v5.0.0
+    hooks:
+      - id: check-toml
+      - id: check-yaml
+      - id: end-of-file-fixer
+      - id: trailing-whitespace
+        args: [--markdown-linebreak-ext=md]
+
+  - repo: https://github.com/adrienverge/yamllint.git
+    rev: v1.37.0
+    hooks:
+      - id: yamllint
+        args: [-c=.yamllint.yaml]
+
+  - repo: https://github.com/codespell-project/codespell
+    rev: v2.4.1
+    hooks:
+      - id: codespell
+        additional_dependencies:
+          - tomli
+
+  - repo: https://github.com/crate-ci/typos
+    rev: v1.31.1
+    hooks:
+      - id: typos
+
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    # Ruff version.
+    rev: v0.11.3
+    hooks:
+      # Run the linter.
+      - id: ruff
+        args: [--fix, --exit-non-zero-on-fix]
+      # Run the formatter.
+      - id: ruff-format
+
+  - repo: https://github.com/astral-sh/uv-pre-commit
+    # uv version.
+    rev: 0.6.12
+    hooks:
+      - id: uv-lock

dcat_ap_plus-0.1.0rc1/.yamllint.yaml

@@ -0,0 +1,12 @@
+# Configuration for https://github.com/adrienverge/yamllint
+
+extends: default
+
+rules:
+  document-start: disable  # Don't check if document has a start marker (---).
+  line-length:
+    max: 80
+    level: warning
+    allow-non-breakable-words: true
+    allow-non-breakable-inline-mappings: true
+  new-lines: disable  # Don't check for type of new line characters.

dcat_ap_plus-0.1.0rc1/CODE_OF_CONDUCT.md

@@ -0,0 +1,76 @@
+# Contributor Covenant Code of Conduct
+
+## Our Pledge
+
+In the interest of fostering an open and welcoming environment, we as
+contributors and maintainers pledge to make participation in our project and
+our community a harassment-free experience for everyone, regardless of age,
+body size, disability, ethnicity, gender identity and expression, level of
+experience, nationality, personal appearance, race, religion, or sexual
+identity and orientation.
+
+## Our Standards
+
+Examples of behavior that contributes to creating a positive environment
+include:
+
+* Using welcoming and inclusive language
+* Being respectful of differing viewpoints and experiences
+* Gracefully accepting constructive criticism
+* Focusing on what is best for the community
+* Showing empathy towards other community members
+
+Examples of unacceptable behavior by participants include:
+
+* The use of sexualized language or imagery and unwelcome sexual attention or
+  advances
+* Trolling, insulting/derogatory comments, and personal or political attacks
+* Public or private harassment
+* Publishing others' private information, such as a physical or electronic
+  address, without explicit permission
+* Other conduct which could reasonably be considered inappropriate in a
+  professional setting
+
+## Our Responsibilities
+
+Project maintainers are responsible for clarifying the standards of acceptable
+behavior and are expected to take appropriate and fair corrective action in
+response to any instances of unacceptable behavior.
+
+Project maintainers have the right and responsibility to remove, edit, or
+reject comments, commits, code, wiki edits, issues, and other contributions
+that are not aligned to this Code of Conduct, or to ban temporarily or
+permanently any contributor for other behaviors that they deem inappropriate,
+threatening, offensive, or harmful.
+
+## Scope
+
+This Code of Conduct applies both within project spaces and in public spaces
+when an individual is representing the project or its community. Examples of
+representing a project or community include using an official project e-mail
+address, posting via an official social media account, or acting as an
+appointed representative at an online or offline event. Representation of a
+project may be further defined and clarified by project maintainers.
+
+## Enforcement
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be
+reported by [contacting the project team](contact.md). All complaints will be
+reviewed and investigated and will result in a response that is deemed
+necessary and appropriate to the circumstances. The project team is obligated
+to maintain confidentiality with regard to the reporter of an incident. Further
+details of specific enforcement policies may be posted separately.
+
+Project maintainers who do not follow or enforce the Code of Conduct in good
+faith may face temporary or permanent repercussions as determined by other
+members of the project's leadership.
+
+## Attribution
+
+This code of conduct has been derived from the excellent code of conduct of the
+[ATOM project](https://github.com/atom/atom/blob/master/CODE_OF_CONDUCT.md)
+which in turn is adapted from the [Contributor Covenant][homepage], version
+1.4, available at [https://contributor-covenant.org/version/1/4][version]
+
+[homepage]: https://contributor-covenant.org
+[version]: https://contributor-covenant.org/version/1/4/