dbdicom 0.2.5__tar.gz → 0.2.6__tar.gz

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  1. {dbdicom-0.2.5/src/dbdicom.egg-info → dbdicom-0.2.6}/PKG-INFO +3 -2
  2. {dbdicom-0.2.5 → dbdicom-0.2.6}/pyproject.toml +1 -1
  3. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/extensions/skimage.py +1 -1
  4. {dbdicom-0.2.5 → dbdicom-0.2.6/src/dbdicom.egg-info}/PKG-INFO +3 -2
  5. {dbdicom-0.2.5 → dbdicom-0.2.6}/LICENSE +0 -0
  6. {dbdicom-0.2.5 → dbdicom-0.2.6}/MANIFEST.in +0 -0
  7. {dbdicom-0.2.5 → dbdicom-0.2.6}/README.md +0 -0
  8. {dbdicom-0.2.5 → dbdicom-0.2.6}/setup.cfg +0 -0
  9. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/__init__.py +0 -0
  10. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/create.py +0 -0
  11. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/dro.py +0 -0
  12. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/ds/__init__.py +0 -0
  13. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/ds/create.py +0 -0
  14. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/ds/dataset.py +0 -0
  15. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/ds/dictionaries.py +0 -0
  16. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/ds/types/ct_image.py +0 -0
  17. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/ds/types/enhanced_mr_image.py +0 -0
  18. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/ds/types/mr_image.py +0 -0
  19. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/ds/types/parametric_map.py +0 -0
  20. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/ds/types/ultrasound_multiframe_image.py +0 -0
  21. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/ds/types/xray_angiographic_image.py +0 -0
  22. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/extensions/__init__.py +0 -0
  23. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/extensions/dipy.py +0 -0
  24. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/extensions/elastix.py +0 -0
  25. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/extensions/matplotlib.py +0 -0
  26. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/extensions/numpy.py +0 -0
  27. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/extensions/scipy.py +0 -0
  28. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/extensions/sklearn.py +0 -0
  29. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/extensions/vreg.py +0 -0
  30. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/__init__.py +0 -0
  31. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/README.md +0 -0
  32. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/__init__.py +0 -0
  33. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/bin/__init__.py +0 -0
  34. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/bin/deidentify +0 -0
  35. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/bin/deidentify.bat +0 -0
  36. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/bin/emf2sf +0 -0
  37. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/bin/emf2sf.bat +0 -0
  38. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/etc/__init__.py +0 -0
  39. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/etc/emf2sf/__init__.py +0 -0
  40. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/etc/emf2sf/log4j.properties +0 -0
  41. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/lib/__init__.py +0 -0
  42. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/lib/commons-cli-1.4.jar +0 -0
  43. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/lib/dcm4che-core-5.23.1.jar +0 -0
  44. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/lib/dcm4che-emf-5.23.1.jar +0 -0
  45. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/lib/dcm4che-tool-common-5.23.1.jar +0 -0
  46. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/lib/dcm4che-tool-emf2sf-5.23.1.jar +0 -0
  47. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/lib/log4j-1.2.17.jar +0 -0
  48. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/lib/macosx-x86-64/libopencv_java.jnilib +0 -0
  49. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/lib/slf4j-api-1.7.30.jar +0 -0
  50. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/lib/slf4j-log4j12-1.7.30.jar +0 -0
  51. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/lib/windows-x86/clib_jiio.dll +0 -0
  52. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/lib/windows-x86/clib_jiio_sse2.dll +0 -0
  53. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/lib/windows-x86/clib_jiio_util.dll +0 -0
  54. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/lib/windows-x86/opencv_java.dll +0 -0
  55. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/external/dcm4che/lib/windows-x86-64/opencv_java.dll +0 -0
  56. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/manager.py +0 -0
  57. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/message.py +0 -0
  58. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/pipelines.py +0 -0
  59. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/record.py +0 -0
  60. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/types/database.py +0 -0
  61. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/types/instance.py +0 -0
  62. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/types/patient.py +0 -0
  63. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/types/series.py +0 -0
  64. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/types/study.py +0 -0
  65. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/utils/dcm4che.py +0 -0
  66. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/utils/files.py +0 -0
  67. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/utils/image.py +0 -0
  68. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/utils/variables.py +0 -0
  69. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom.egg-info/SOURCES.txt +0 -0
  70. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom.egg-info/dependency_links.txt +0 -0
  71. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom.egg-info/requires.txt +0 -0
  72. {dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom.egg-info/top_level.txt +0 -0
  73. {dbdicom-0.2.5 → dbdicom-0.2.6}/tests/test_dataset.py +0 -0
  74. {dbdicom-0.2.5 → dbdicom-0.2.6}/tests/test_dcm4che.py +0 -0
  75. {dbdicom-0.2.5 → dbdicom-0.2.6}/tests/test_dro.py +0 -0
  76. {dbdicom-0.2.5 → dbdicom-0.2.6}/tests/test_extensions.py +0 -0
  77. {dbdicom-0.2.5 → dbdicom-0.2.6}/tests/test_manager.py +0 -0
  78. {dbdicom-0.2.5 → dbdicom-0.2.6}/tests/test_record.py +0 -0
  79. {dbdicom-0.2.5 → dbdicom-0.2.6}/tests/test_series.py +0 -0
{dbdicom-0.2.5/src/dbdicom.egg-info → dbdicom-0.2.6}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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- Metadata-Version: 2.2
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+ Metadata-Version: 2.4
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  Name: dbdicom
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- Version: 0.2.5
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+ Version: 0.2.6
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  Summary: A pythonic interface for reading and writing DICOM databases
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  Author-email: Steven Sourbron <s.sourbron@sheffield.ac.uk>, Ebony Gunwhy <e.gunwhy@sheffield.ac.uk>
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  Project-URL: Homepage, https://qib-sheffield.github.io/dbdicom/
@@ -33,6 +33,7 @@ Requires-Dist: scikit-image; extra == "extensions"
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  Requires-Dist: itk-elastix; extra == "extensions"
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  Requires-Dist: dipy; extra == "extensions"
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  Requires-Dist: scikit-learn; extra == "extensions"
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+ Dynamic: license-file
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  `dbdicom` is a Pythonic interface for reading and writing DICOM databases.
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{dbdicom-0.2.5 → dbdicom-0.2.6}/pyproject.toml RENAMED
@@ -7,7 +7,7 @@ requires = ['setuptools>=61.2']
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  [project]
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  name = "dbdicom"
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- version = "0.2.5"
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+ version = "0.2.6"
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  dependencies = [
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  "matplotlib",
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  "nibabel",
{dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/extensions/skimage.py RENAMED
@@ -97,7 +97,7 @@ def _volume_features(arr, spacing=[1,1,1], affine=None, show_progress=print):
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  slice_spacing = np.linalg.norm(affine[:3, 2])
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  spacing = (column_spacing, row_spacing, slice_spacing)
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  voxel_volume = spacing[0]*spacing[1]*spacing[2]
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- nr_of_voxels = np.count_nonzero(array)
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+ nr_of_voxels = np.count_nonzero(array > 0.5)
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  volume = nr_of_voxels * voxel_volume
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  # Surface properties - for now only extracting surface area
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  # Note: this is smoothing the surface first - not tested in depth whether this is necessary or helpful.
{dbdicom-0.2.5 → dbdicom-0.2.6/src/dbdicom.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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- Metadata-Version: 2.2
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+ Metadata-Version: 2.4
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  Name: dbdicom
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- Version: 0.2.5
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+ Version: 0.2.6
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  Summary: A pythonic interface for reading and writing DICOM databases
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  Author-email: Steven Sourbron <s.sourbron@sheffield.ac.uk>, Ebony Gunwhy <e.gunwhy@sheffield.ac.uk>
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  Project-URL: Homepage, https://qib-sheffield.github.io/dbdicom/
@@ -33,6 +33,7 @@ Requires-Dist: scikit-image; extra == "extensions"
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  Requires-Dist: itk-elastix; extra == "extensions"
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  Requires-Dist: dipy; extra == "extensions"
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  Requires-Dist: scikit-learn; extra == "extensions"
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+ Dynamic: license-file
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  `dbdicom` is a Pythonic interface for reading and writing DICOM databases.
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{dbdicom-0.2.5 → dbdicom-0.2.6}/LICENSE RENAMED
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{dbdicom-0.2.5 → dbdicom-0.2.6}/MANIFEST.in RENAMED
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{dbdicom-0.2.5 → dbdicom-0.2.6}/README.md RENAMED
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{dbdicom-0.2.5 → dbdicom-0.2.6}/setup.cfg RENAMED
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{dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/__init__.py RENAMED
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{dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/create.py RENAMED
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{dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/dro.py RENAMED
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{dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/manager.py RENAMED
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{dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/message.py RENAMED
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{dbdicom-0.2.5 → dbdicom-0.2.6}/src/dbdicom/record.py RENAMED
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{dbdicom-0.2.5 → dbdicom-0.2.6}/tests/test_dataset.py RENAMED
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{dbdicom-0.2.5 → dbdicom-0.2.6}/tests/test_dcm4che.py RENAMED
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{dbdicom-0.2.5 → dbdicom-0.2.6}/tests/test_dro.py RENAMED
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{dbdicom-0.2.5 → dbdicom-0.2.6}/tests/test_manager.py RENAMED
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{dbdicom-0.2.5 → dbdicom-0.2.6}/tests/test_record.py RENAMED
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{dbdicom-0.2.5 → dbdicom-0.2.6}/tests/test_series.py RENAMED
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