dayhoff-tools 1.9.9__tar.gz → 1.9.11__tar.gz

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Files changed (39) hide show
  1. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/PKG-INFO +1 -1
  2. dayhoff_tools-1.9.11/dayhoff_tools/cli/engine/__init__.py +49 -0
  3. dayhoff_tools-1.9.11/dayhoff_tools/cli/engine/engine_core.py +653 -0
  4. dayhoff_tools-1.9.11/dayhoff_tools/cli/engine/engine_lifecycle.py +136 -0
  5. dayhoff_tools-1.9.11/dayhoff_tools/cli/engine/engine_maintenance.py +377 -0
  6. dayhoff_tools-1.9.11/dayhoff_tools/cli/engine/engine_management.py +505 -0
  7. dayhoff_tools-1.9.11/dayhoff_tools/cli/engine/shared.py +501 -0
  8. dayhoff_tools-1.9.11/dayhoff_tools/cli/engine/studio_commands.py +825 -0
  9. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/cli/main.py +1 -1
  10. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/pyproject.toml +1 -1
  11. dayhoff_tools-1.9.9/dayhoff_tools/cli/engine_commands.py +0 -3013
  12. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/README.md +0 -0
  13. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/__init__.py +0 -0
  14. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/chemistry/standardizer.py +0 -0
  15. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/chemistry/utils.py +0 -0
  16. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/cli/__init__.py +0 -0
  17. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/cli/cloud_commands.py +0 -0
  18. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/cli/swarm_commands.py +0 -0
  19. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/cli/utility_commands.py +0 -0
  20. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/deployment/base.py +0 -0
  21. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/deployment/deploy_aws.py +0 -0
  22. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
  23. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/deployment/deploy_utils.py +0 -0
  24. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/deployment/job_runner.py +0 -0
  25. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/deployment/processors.py +0 -0
  26. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/deployment/swarm.py +0 -0
  27. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/embedders.py +0 -0
  28. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/fasta.py +0 -0
  29. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/file_ops.py +0 -0
  30. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/h5.py +0 -0
  31. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/intake/gcp.py +0 -0
  32. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/intake/gtdb.py +0 -0
  33. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/intake/kegg.py +0 -0
  34. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/intake/mmseqs.py +0 -0
  35. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/intake/structure.py +0 -0
  36. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/intake/uniprot.py +0 -0
  37. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/logs.py +0 -0
  38. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/sqlite.py +0 -0
  39. {dayhoff_tools-1.9.9 → dayhoff_tools-1.9.11}/dayhoff_tools/warehouse.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.9.9
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+ Version: 1.9.11
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
@@ -0,0 +1,49 @@
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+ """Engine and Studio management commands for DHT CLI."""
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+
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+ import typer
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+
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+ # Initialize Typer apps
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+ engine_app = typer.Typer(help="Manage compute engines for development.")
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+ studio_app = typer.Typer(help="Manage persistent development studios.")
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+
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+ # Import all command functions
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+ from .engine_core import engine_status, launch_engine, list_engines
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+ from .engine_lifecycle import start_engine, stop_engine, terminate_engine
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+ from .engine_maintenance import coffee, debug_engine, idle_timeout_cmd, repair_engine
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+ from .engine_management import config_ssh, create_ami, resize_engine, ssh_engine
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+ from .studio_commands import (
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+ attach_studio,
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+ create_studio,
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+ delete_studio,
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+ detach_studio,
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+ list_studios,
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+ reset_studio,
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+ resize_studio,
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+ studio_status,
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+ )
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+
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+ # Register engine commands
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+ engine_app.command("launch")(launch_engine)
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+ engine_app.command("list")(list_engines)
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+ engine_app.command("status")(engine_status)
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+ engine_app.command("start")(start_engine)
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+ engine_app.command("stop")(stop_engine)
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+ engine_app.command("terminate")(terminate_engine)
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+ engine_app.command("ssh")(ssh_engine)
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+ engine_app.command("config-ssh")(config_ssh)
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+ engine_app.command("resize")(resize_engine)
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+ engine_app.command("gami")(create_ami)
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+ engine_app.command("coffee")(coffee)
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+ engine_app.command("idle")(idle_timeout_cmd)
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+ engine_app.command("debug")(debug_engine)
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+ engine_app.command("repair")(repair_engine)
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+
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+ # Register studio commands
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+ studio_app.command("create")(create_studio)
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+ studio_app.command("status")(studio_status)
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+ studio_app.command("attach")(attach_studio)
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+ studio_app.command("detach")(detach_studio)
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+ studio_app.command("delete")(delete_studio)
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+ studio_app.command("list")(list_studios)
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+ studio_app.command("reset")(reset_studio)
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+ studio_app.command("resize")(resize_studio)