dayhoff-tools 1.9.3__tar.gz → 1.9.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (32) hide show
  1. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/PKG-INFO +1 -1
  2. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/cli/engine_commands.py +5 -5
  3. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/pyproject.toml +1 -1
  4. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/README.md +0 -0
  5. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/__init__.py +0 -0
  6. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/chemistry/standardizer.py +0 -0
  7. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/chemistry/utils.py +0 -0
  8. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/cli/__init__.py +0 -0
  9. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/cli/cloud_commands.py +0 -0
  10. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/cli/main.py +0 -0
  11. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/cli/swarm_commands.py +0 -0
  12. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/cli/utility_commands.py +0 -0
  13. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/deployment/base.py +0 -0
  14. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/deployment/deploy_aws.py +0 -0
  15. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
  16. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/deployment/deploy_utils.py +0 -0
  17. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/deployment/job_runner.py +0 -0
  18. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/deployment/processors.py +0 -0
  19. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/deployment/swarm.py +0 -0
  20. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/embedders.py +0 -0
  21. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/fasta.py +0 -0
  22. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/file_ops.py +0 -0
  23. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/h5.py +0 -0
  24. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/intake/gcp.py +0 -0
  25. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/intake/gtdb.py +0 -0
  26. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/intake/kegg.py +0 -0
  27. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/intake/mmseqs.py +0 -0
  28. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/intake/structure.py +0 -0
  29. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/intake/uniprot.py +0 -0
  30. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/logs.py +0 -0
  31. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/sqlite.py +0 -0
  32. {dayhoff_tools-1.9.3 → dayhoff_tools-1.9.4}/dayhoff_tools/warehouse.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.9.3
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+ Version: 1.9.4
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
@@ -894,9 +894,10 @@ def engine_status(
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  status_lines.append(
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  f" • GPU Drivers: {'OK' if health.get('drivers_ok') else 'MISSING'}"
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  )
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- status_lines.append(
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- f" • Idle Detector: {health.get('idle_detector_timer', 'unknown')}"
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+ idle_stat = health.get("idle_detector_service") or health.get(
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+ "idle_detector_timer", "unknown"
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  )
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+ status_lines.append(f" • Idle Detector: {idle_stat}")
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  except Exception:
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  pass
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@@ -2687,7 +2688,7 @@ def idle_timeout_cmd(
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  cmd = (
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  "sudo sed -i '/^IDLE_TIMEOUT_SECONDS=/d' /etc/engine.env && "
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  f"echo 'IDLE_TIMEOUT_SECONDS={seconds}' | sudo tee -a /etc/engine.env >/dev/null && "
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- "sudo systemctl restart engine-idle-detector.timer"
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+ "sudo systemctl restart engine-idle-detector.service"
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  )
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  resp = ssm.send_command(
@@ -2826,8 +2827,7 @@ def repair_engine(
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  "echo 'finished' | sudo tee /opt/dayhoff/state/engine-init.stage > /dev/null",
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  # Ensure SSM agent is running
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  "sudo systemctl restart amazon-ssm-agent 2>/dev/null || true",
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- # Restart idle detector
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- "sudo systemctl restart engine-idle-detector.timer 2>/dev/null || true",
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+ # Restart idle detector (service only)
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  "sudo systemctl restart engine-idle-detector.service 2>/dev/null || true",
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  # Report status
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  "echo '=== Repair Complete ===' && echo 'Sentinel: ' && ls -la /opt/dayhoff/first_boot_complete.sentinel",
@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
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  [project]
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  name = "dayhoff-tools"
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- version = "1.9.3"
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+ version = "1.9.4"
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  description = "Common tools for all the repos at Dayhoff Labs"
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  authors = [
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  {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}
File without changes