dayhoff-tools 1.8.7__tar.gz → 1.9.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (32) hide show
  1. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/PKG-INFO +1 -1
  2. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/cli/engine_commands.py +21 -6
  3. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/pyproject.toml +1 -1
  4. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/README.md +0 -0
  5. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/__init__.py +0 -0
  6. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/chemistry/standardizer.py +0 -0
  7. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/chemistry/utils.py +0 -0
  8. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/cli/__init__.py +0 -0
  9. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/cli/cloud_commands.py +0 -0
  10. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/cli/main.py +0 -0
  11. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/cli/swarm_commands.py +0 -0
  12. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/cli/utility_commands.py +0 -0
  13. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/deployment/base.py +0 -0
  14. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/deployment/deploy_aws.py +0 -0
  15. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
  16. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/deployment/deploy_utils.py +0 -0
  17. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/deployment/job_runner.py +0 -0
  18. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/deployment/processors.py +0 -0
  19. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/deployment/swarm.py +0 -0
  20. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/embedders.py +0 -0
  21. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/fasta.py +0 -0
  22. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/file_ops.py +0 -0
  23. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/h5.py +0 -0
  24. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/intake/gcp.py +0 -0
  25. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/intake/gtdb.py +0 -0
  26. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/intake/kegg.py +0 -0
  27. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/intake/mmseqs.py +0 -0
  28. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/intake/structure.py +0 -0
  29. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/intake/uniprot.py +0 -0
  30. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/logs.py +0 -0
  31. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/sqlite.py +0 -0
  32. {dayhoff_tools-1.8.7 → dayhoff_tools-1.9.0}/dayhoff_tools/warehouse.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.8.7
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+ Version: 1.9.0
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
@@ -847,16 +847,31 @@ def engine_status(
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  run_disp = "[green]Running[/green]"
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  elif running_state == "pending":
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  run_disp = "[yellow]Starting...[/yellow]"
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+ elif running_state == "stopping":
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+ run_disp = "[yellow]Stopping...[/yellow]"
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  elif running_state == "stopped":
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  run_disp = "[dim]Stopped[/dim]"
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  else:
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- run_disp = engine["state"]
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+ run_disp = engine["state"].capitalize()
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- active_disp = (
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- "[green]Active[/green]"
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- if idle_detector.get("status") == "active"
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- else "[yellow]Idle[/yellow]"
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- )
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+ # Compose Active/Idle header with extra detail when idle
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+ if idle_detector.get("status") == "active":
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+ active_disp = "[green]Active[/green]"
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+ else:
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+ # show Idle <elapsed>/<threshold> if available; else just N/A for stopped states
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+ if running_state in ("stopped", "stopping"):
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+ active_disp = "[dim]N/A[/dim]"
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+ else:
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+ idle_seconds = idle_detector.get("idle_seconds")
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+ thresh = idle_detector.get("idle_threshold")
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+ if isinstance(idle_seconds, (int, float)) and isinstance(
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+ thresh, (int, float)
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+ ):
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+ active_disp = (
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+ f"[yellow]Idle {int(idle_seconds)//60}m/{int(thresh)//60}m[/yellow]"
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+ )
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+ else:
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+ active_disp = "[yellow]Idle[/yellow]"
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  top_lines = [
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  f"[blue]{engine['name']}[/blue] {run_disp} {active_disp}\n",
@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
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  [project]
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  name = "dayhoff-tools"
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- version = "1.8.7"
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+ version = "1.9.0"
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  description = "Common tools for all the repos at Dayhoff Labs"
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  authors = [
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  {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}
File without changes