dayhoff-tools 1.6.11__tar.gz → 1.6.12__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (32) hide show
  1. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/PKG-INFO +1 -1
  2. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/cli/engine_commands.py +4 -0
  3. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/pyproject.toml +1 -1
  4. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/README.md +0 -0
  5. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/__init__.py +0 -0
  6. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/chemistry/standardizer.py +0 -0
  7. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/chemistry/utils.py +0 -0
  8. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/cli/__init__.py +0 -0
  9. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/cli/cloud_commands.py +0 -0
  10. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/cli/main.py +0 -0
  11. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/cli/swarm_commands.py +0 -0
  12. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/cli/utility_commands.py +0 -0
  13. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/deployment/base.py +0 -0
  14. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/deployment/deploy_aws.py +0 -0
  15. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
  16. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/deployment/deploy_utils.py +0 -0
  17. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/deployment/job_runner.py +0 -0
  18. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/deployment/processors.py +0 -0
  19. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/deployment/swarm.py +0 -0
  20. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/embedders.py +0 -0
  21. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/fasta.py +0 -0
  22. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/file_ops.py +0 -0
  23. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/h5.py +0 -0
  24. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/intake/gcp.py +0 -0
  25. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/intake/gtdb.py +0 -0
  26. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/intake/kegg.py +0 -0
  27. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/intake/mmseqs.py +0 -0
  28. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/intake/structure.py +0 -0
  29. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/intake/uniprot.py +0 -0
  30. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/logs.py +0 -0
  31. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/sqlite.py +0 -0
  32. {dayhoff_tools-1.6.11 → dayhoff_tools-1.6.12}/dayhoff_tools/warehouse.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.6.11
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+ Version: 1.6.12
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
@@ -1937,16 +1937,20 @@ def _poll_operation(operation_id: str, timeout: int = 600) -> Tuple[bool, str]:
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  # ---- fetch status ---------------------------------------------------
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  op_resp = make_api_request("GET", f"/operations/{operation_id}")
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  if op_resp.status_code != 200:
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+ console.print(f"[dim]DEBUG: Operation poll failed: HTTP {op_resp.status_code}[/dim]")
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  return False, (
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  f"Failed to fetch operation status (HTTP {op_resp.status_code})"
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  )
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  data = op_resp.json()
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  op_status = data.get("status")
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+ console.print(f"[dim]DEBUG: Operation status: {op_status}[/dim]")
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  # ---- interpret state -----------------------------------------------
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  if op_status == "COMPLETED":
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+ console.print("[dim]DEBUG: Operation completed successfully[/dim]")
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  return True, ""
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  if op_status == "FAILED":
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+ console.print(f"[dim]DEBUG: Operation failed: {data.get('error', 'Operation failed')}[/dim]")
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  return False, data.get("error", "Operation failed")
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  # Not finished yet – wait a little and poll again (no live spinner)
@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
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  [project]
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  name = "dayhoff-tools"
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- version = "1.6.11"
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+ version = "1.6.12"
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  description = "Common tools for all the repos at Dayhoff Labs"
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  authors = [
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  {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}
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