dayhoff-tools 1.4.15__tar.gz → 1.4.17__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (32) hide show
  1. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/PKG-INFO +1 -1
  2. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/cli/engine_commands.py +10 -3
  3. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/pyproject.toml +1 -1
  4. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/README.md +0 -0
  5. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/__init__.py +0 -0
  6. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/chemistry/standardizer.py +0 -0
  7. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/chemistry/utils.py +0 -0
  8. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/cli/__init__.py +0 -0
  9. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/cli/cloud_commands.py +0 -0
  10. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/cli/main.py +0 -0
  11. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/cli/swarm_commands.py +0 -0
  12. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/cli/utility_commands.py +0 -0
  13. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/deployment/base.py +0 -0
  14. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/deployment/deploy_aws.py +0 -0
  15. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
  16. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/deployment/deploy_utils.py +0 -0
  17. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/deployment/job_runner.py +0 -0
  18. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/deployment/processors.py +0 -0
  19. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/deployment/swarm.py +0 -0
  20. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/embedders.py +0 -0
  21. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/fasta.py +0 -0
  22. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/file_ops.py +0 -0
  23. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/h5.py +0 -0
  24. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/intake/gcp.py +0 -0
  25. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/intake/gtdb.py +0 -0
  26. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/intake/kegg.py +0 -0
  27. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/intake/mmseqs.py +0 -0
  28. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/intake/structure.py +0 -0
  29. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/intake/uniprot.py +0 -0
  30. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/logs.py +0 -0
  31. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/sqlite.py +0 -0
  32. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.17}/dayhoff_tools/warehouse.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.4.15
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+ Version: 1.4.17
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
@@ -429,6 +429,11 @@ def launch_engine(
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  "-s",
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  help="Boot disk size in GB (default: 50GB, min: 20GB, max: 1000GB)",
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  ),
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+ availability_zone: Optional[str] = typer.Option(
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+ None,
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+ "--az",
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+ help="Prefer a specific Availability Zone (e.g., us-east-1b). If omitted the service will try all public subnets.",
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+ ),
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  ):
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  """Launch a new engine instance."""
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  username = check_aws_sso()
@@ -471,6 +476,8 @@ def launch_engine(
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  }
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  if boot_disk_size is not None:
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  request_data["boot_disk_size"] = boot_disk_size
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+ if availability_zone:
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+ request_data["availability_zone"] = availability_zone
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  response = make_api_request("POST", "/engines", json_data=request_data)
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@@ -1747,11 +1754,11 @@ def _attempt_studio_attach(studio, engine, target_user, public_key):
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  error_text = response.json().get("error", "Unknown error")
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  if not recoverable:
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- # fatal – abort immediately and show message
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+ # fatal – abort immediately
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  return False, error_text
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- # otherwise wait and retry but surface the reason so caller can display if desired
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- return False, error_text
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+ # recoverablesignal caller to retry without treating as error
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+ return False, None
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  @studio_app.command("detach")
@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
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  [project]
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  name = "dayhoff-tools"
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- version = "1.4.15"
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+ version = "1.4.17"
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  description = "Common tools for all the repos at Dayhoff Labs"
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  authors = [
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  {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}
File without changes