dayhoff-tools 1.4.15__tar.gz → 1.4.16__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (32) hide show
  1. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/PKG-INFO +1 -1
  2. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/cli/engine_commands.py +3 -3
  3. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/pyproject.toml +1 -1
  4. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/README.md +0 -0
  5. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/__init__.py +0 -0
  6. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/chemistry/standardizer.py +0 -0
  7. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/chemistry/utils.py +0 -0
  8. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/cli/__init__.py +0 -0
  9. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/cli/cloud_commands.py +0 -0
  10. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/cli/main.py +0 -0
  11. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/cli/swarm_commands.py +0 -0
  12. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/cli/utility_commands.py +0 -0
  13. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/deployment/base.py +0 -0
  14. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/deployment/deploy_aws.py +0 -0
  15. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
  16. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/deployment/deploy_utils.py +0 -0
  17. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/deployment/job_runner.py +0 -0
  18. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/deployment/processors.py +0 -0
  19. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/deployment/swarm.py +0 -0
  20. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/embedders.py +0 -0
  21. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/fasta.py +0 -0
  22. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/file_ops.py +0 -0
  23. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/h5.py +0 -0
  24. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/intake/gcp.py +0 -0
  25. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/intake/gtdb.py +0 -0
  26. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/intake/kegg.py +0 -0
  27. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/intake/mmseqs.py +0 -0
  28. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/intake/structure.py +0 -0
  29. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/intake/uniprot.py +0 -0
  30. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/logs.py +0 -0
  31. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/sqlite.py +0 -0
  32. {dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/warehouse.py +0 -0
{dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.4.15
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+ Version: 1.4.16
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
{dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/dayhoff_tools/cli/engine_commands.py RENAMED
@@ -1747,11 +1747,11 @@ def _attempt_studio_attach(studio, engine, target_user, public_key):
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  error_text = response.json().get("error", "Unknown error")
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  if not recoverable:
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- # fatal – abort immediately and show message
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+ # fatal – abort immediately
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  return False, error_text
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- # otherwise wait and retry – but surface the reason so caller can display if desired
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- return False, error_text
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+ # recoverable – signal caller to retry without treating as error
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+ return False, None
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  @studio_app.command("detach")
{dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/pyproject.toml RENAMED
@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
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  [project]
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  name = "dayhoff-tools"
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- version = "1.4.15"
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+ version = "1.4.16"
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  description = "Common tools for all the repos at Dayhoff Labs"
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  authors = [
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  {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}
{dayhoff_tools-1.4.15 → dayhoff_tools-1.4.16}/README.md RENAMED
File without changes