dayhoff-tools 1.4.14__tar.gz → 1.4.16__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (32) hide show
  1. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/PKG-INFO +1 -1
  2. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/cli/engine_commands.py +7 -7
  3. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/pyproject.toml +1 -1
  4. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/README.md +0 -0
  5. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/__init__.py +0 -0
  6. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/chemistry/standardizer.py +0 -0
  7. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/chemistry/utils.py +0 -0
  8. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/cli/__init__.py +0 -0
  9. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/cli/cloud_commands.py +0 -0
  10. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/cli/main.py +0 -0
  11. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/cli/swarm_commands.py +0 -0
  12. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/cli/utility_commands.py +0 -0
  13. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/deployment/base.py +0 -0
  14. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/deployment/deploy_aws.py +0 -0
  15. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
  16. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/deployment/deploy_utils.py +0 -0
  17. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/deployment/job_runner.py +0 -0
  18. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/deployment/processors.py +0 -0
  19. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/deployment/swarm.py +0 -0
  20. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/embedders.py +0 -0
  21. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/fasta.py +0 -0
  22. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/file_ops.py +0 -0
  23. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/h5.py +0 -0
  24. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/intake/gcp.py +0 -0
  25. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/intake/gtdb.py +0 -0
  26. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/intake/kegg.py +0 -0
  27. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/intake/mmseqs.py +0 -0
  28. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/intake/structure.py +0 -0
  29. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/intake/uniprot.py +0 -0
  30. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/logs.py +0 -0
  31. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/sqlite.py +0 -0
  32. {dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/warehouse.py +0 -0
{dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.3
2
2
  Name: dayhoff-tools
3
- Version: 1.4.14
3
+ Version: 1.4.16
4
4
  Summary: Common tools for all the repos at Dayhoff Labs
5
5
  Author: Daniel Martin-Alarcon
6
6
  Author-email: dma@dayhofflabs.com
{dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/dayhoff_tools/cli/engine_commands.py RENAMED
@@ -1747,11 +1747,11 @@ def _attempt_studio_attach(studio, engine, target_user, public_key):
1747
1747
  error_text = response.json().get("error", "Unknown error")
1748
1748
 
1749
1749
  if not recoverable:
1750
- # fatal – abort immediately and show message
1750
+ # fatal – abort immediately
1751
1751
  return False, error_text
1752
1752
 
1753
- # otherwise wait and retry – but surface the reason so caller can display if desired
1754
- return False, error_text
1753
+ # recoverable – signal caller to retry without treating as error
1754
+ return False, None
1755
1755
 
1756
1756
 
1757
1757
  @studio_app.command("detach")
@@ -1980,11 +1980,11 @@ def reset_studio(
1980
1980
  waiter = ec2.get_waiter("volume_available")
1981
1981
  waiter.wait(VolumeIds=[studio["studio_id"]])
1982
1982
 
1983
- # Reset in DynamoDB
1983
+ # Reset in DynamoDB – align attribute names with Studio Manager backend
1984
1984
  table.update_item(
1985
- Key={"studio_id": studio["studio_id"]},
1986
- UpdateExpression="SET #status = :status, attached_vm_id = :vm_id, attached_device = :device",
1987
- ExpressionAttributeNames={"#status": "status"},
1985
+ Key={"StudioID": studio["studio_id"]},
1986
+ UpdateExpression="SET #st = :status, AttachedVMID = :vm_id, AttachedDevice = :device",
1987
+ ExpressionAttributeNames={"#st": "Status"},
1988
1988
  ExpressionAttributeValues={
1989
1989
  ":status": "available",
1990
1990
  ":vm_id": None,
{dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/pyproject.toml RENAMED
@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
5
5
 
6
6
  [project]
7
7
  name = "dayhoff-tools"
8
- version = "1.4.14"
8
+ version = "1.4.16"
9
9
  description = "Common tools for all the repos at Dayhoff Labs"
10
10
  authors = [
11
11
  {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}
{dayhoff_tools-1.4.14 → dayhoff_tools-1.4.16}/README.md RENAMED
File without changes