dayhoff-tools 1.4.12__tar.gz → 1.4.13__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (32) hide show
  1. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/PKG-INFO +1 -1
  2. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/cli/engine_commands.py +11 -4
  3. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/pyproject.toml +1 -1
  4. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/README.md +0 -0
  5. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/__init__.py +0 -0
  6. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/chemistry/standardizer.py +0 -0
  7. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/chemistry/utils.py +0 -0
  8. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/cli/__init__.py +0 -0
  9. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/cli/cloud_commands.py +0 -0
  10. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/cli/main.py +0 -0
  11. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/cli/swarm_commands.py +0 -0
  12. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/cli/utility_commands.py +0 -0
  13. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/deployment/base.py +0 -0
  14. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/deployment/deploy_aws.py +0 -0
  15. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
  16. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/deployment/deploy_utils.py +0 -0
  17. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/deployment/job_runner.py +0 -0
  18. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/deployment/processors.py +0 -0
  19. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/deployment/swarm.py +0 -0
  20. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/embedders.py +0 -0
  21. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/fasta.py +0 -0
  22. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/file_ops.py +0 -0
  23. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/h5.py +0 -0
  24. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/intake/gcp.py +0 -0
  25. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/intake/gtdb.py +0 -0
  26. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/intake/kegg.py +0 -0
  27. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/intake/mmseqs.py +0 -0
  28. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/intake/structure.py +0 -0
  29. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/intake/uniprot.py +0 -0
  30. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/logs.py +0 -0
  31. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/sqlite.py +0 -0
  32. {dayhoff_tools-1.4.12 → dayhoff_tools-1.4.13}/dayhoff_tools/warehouse.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.4.12
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+ Version: 1.4.13
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
@@ -1671,21 +1671,28 @@ def attach_studio(
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  console.print("[yellow]Engine is still starting up – please retry in a minute.[/yellow]")
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  return
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  else:
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- # Quick path: engine is already runningtry a couple of times then fail fast
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+ # Give the (already-running) engine a little breathing room e.g. it may still be mounting EFS
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+ max_attempts = 10 # ~1 min total
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+ retry_delay = 6
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+
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  for attempt in range(max_attempts):
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  success, error_msg = _attempt_studio_attach(studio, engine, target_user, public_key)
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  if success:
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- break # good to go
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+ break # attached!
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  if error_msg:
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+ # Fatal – bubble up immediately
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  console.print(f"[red]❌ Failed to attach studio: {error_msg}[/red]")
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  return
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- time.sleep(retry_delay)
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+ # Recoverable and still not ready – short wait + optional info
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+ if attempt < max_attempts - 1:
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+ console.print("[dim]Engine not ready yet – retrying …[/dim]")
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+ time.sleep(retry_delay)
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  else:
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- console.print("[yellow]Could not attach studio – please retry in a moment.[/yellow]")
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+ console.print("[yellow]Engine is busy or still initialising – please retry in about a minute.[/yellow]")
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  return
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  # Successful attach path
@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
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  [project]
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  name = "dayhoff-tools"
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- version = "1.4.12"
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+ version = "1.4.13"
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  description = "Common tools for all the repos at Dayhoff Labs"
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  authors = [
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  {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}
File without changes