dayhoff-tools 1.2.3__tar.gz → 1.2.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (31) hide show
  1. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/PKG-INFO +1 -1
  2. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/warehouse.py +21 -0
  3. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/pyproject.toml +1 -1
  4. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/README.md +0 -0
  5. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/__init__.py +0 -0
  6. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/chemistry/standardizer.py +0 -0
  7. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/chemistry/utils.py +0 -0
  8. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/cli/__init__.py +0 -0
  9. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/cli/cloud_commands.py +0 -0
  10. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/cli/main.py +0 -0
  11. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/cli/swarm_commands.py +0 -0
  12. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/cli/utility_commands.py +0 -0
  13. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/deployment/base.py +0 -0
  14. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/deployment/deploy_aws.py +0 -0
  15. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
  16. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/deployment/deploy_utils.py +0 -0
  17. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/deployment/job_runner.py +0 -0
  18. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/deployment/processors.py +0 -0
  19. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/deployment/swarm.py +0 -0
  20. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/embedders.py +0 -0
  21. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/fasta.py +0 -0
  22. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/file_ops.py +0 -0
  23. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/h5.py +0 -0
  24. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/intake/gcp.py +0 -0
  25. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/intake/gtdb.py +0 -0
  26. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/intake/kegg.py +0 -0
  27. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/intake/mmseqs.py +0 -0
  28. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/intake/structure.py +0 -0
  29. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/intake/uniprot.py +0 -0
  30. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/logs.py +0 -0
  31. {dayhoff_tools-1.2.3 → dayhoff_tools-1.2.4}/dayhoff_tools/sqlite.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.2.3
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+ Version: 1.2.4
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
@@ -282,6 +282,27 @@ def add_to_warehouse(
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  # Change the working directory to the warehouse folder
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  os.chdir("warehouse")
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+ # Configure DVC cache for Lightning Studio if needed
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+ if os.path.exists("/teamspace/studios/this_studio"):
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+ studio_cache_dir = "/teamspace/studios/this_studio/.dvc_cache"
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+ os.makedirs(studio_cache_dir, exist_ok=True)
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+ try:
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+ result = subprocess.run(
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+ ["dvc", "cache", "dir"], capture_output=True, text=True, check=True
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+ )
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+ current_cache = result.stdout.strip()
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+ if current_cache != studio_cache_dir:
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+ subprocess.run(
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+ ["dvc", "cache", "dir", studio_cache_dir, "--local"], check=True
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+ )
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+ print(
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+ f"✅ Configured warehouse DVC cache for Lightning Studio: {studio_cache_dir}"
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+ )
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+ except subprocess.CalledProcessError:
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+ subprocess.run(
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+ ["dvc", "cache", "dir", studio_cache_dir, "--local"], check=True
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+ )
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+
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  # Add and push the data file
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  subprocess.run(["dvc", "add", warehouse_path], check=True)
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@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
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  [project]
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  name = "dayhoff-tools"
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- version = "1.2.3"
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+ version = "1.2.4"
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  description = "Common tools for all the repos at Dayhoff Labs"
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  authors = [
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  {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}
File without changes