dayhoff-tools 1.14.5__tar.gz → 1.14.6__tar.gz

{dayhoff_tools-1.14.5 → dayhoff_tools-1.14.6}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: dayhoff-tools
-Version: 1.14.5
+Version: 1.14.6
 Summary: Common tools for all the repos at Dayhoff Labs
 Author: Daniel Martin-Alarcon
 Author-email: dma@dayhofflabs.com

{dayhoff_tools-1.14.5 → dayhoff_tools-1.14.6}/dayhoff_tools/batch/workers/base.py

@@ -83,7 +83,9 @@ def get_input_file(index: int, job_dir: Path, prefix: str = "chunk") -> Path:
     return job_dir / "input" / f"{prefix}_{index:03d}.fasta"
 
 
-def get_output_file(index: int, job_dir: Path, prefix: str = "embed", suffix: str = ".h5") -> Path:
+def get_output_file(
+    index: int, job_dir: Path, prefix: str = "embed", suffix: str = ".h5"
+) -> Path:
     """Get the output file path for a given index.
 
     Args:

{dayhoff_tools-1.14.5 → dayhoff_tools-1.14.6}/dayhoff_tools/cli/batch/commands/finalize.py

@@ -136,10 +136,11 @@ def _finalize_embeddings(output_dir: Path, output_path: Path):
 
         # Combine H5 files
         click.echo("Combining H5 files...")
+        # Get list of h5 file paths as strings
+        h5_file_paths = [str(f) for f in h5_files]
         combine_h5_files(
-            input_folder=str(output_dir),
+            input_files=h5_file_paths,
             output_file=str(output_path),
-            glob_pattern="embed_*.h5",
         )
 
         # Deduplicate

{dayhoff_tools-1.14.5 → dayhoff_tools-1.14.6}/pyproject.toml

@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
 
 [project]
 name = "dayhoff-tools"
-version = "1.14.5"
+version = "1.14.6"
 description = "Common tools for all the repos at Dayhoff Labs"
 authors = [
     {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}