dayhoff-tools 1.14.2__tar.gz → 1.14.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (75) hide show
  1. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/PKG-INFO +1 -1
  2. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engines_studios/studio_commands.py +2 -2
  3. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/pyproject.toml +1 -1
  4. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/README.md +0 -0
  5. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/__init__.py +0 -0
  6. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/batch/__init__.py +0 -0
  7. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/batch/workers/__init__.py +0 -0
  8. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/batch/workers/base.py +0 -0
  9. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/batch/workers/boltz.py +0 -0
  10. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/batch/workers/embed_t5.py +0 -0
  11. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/chemistry/standardizer.py +0 -0
  12. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/chemistry/utils.py +0 -0
  13. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/__init__.py +0 -0
  14. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/batch/__init__.py +0 -0
  15. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/batch/aws_batch.py +0 -0
  16. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/batch/commands/__init__.py +0 -0
  17. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/batch/commands/boltz.py +0 -0
  18. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/batch/commands/cancel.py +0 -0
  19. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/batch/commands/embed_t5.py +0 -0
  20. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/batch/commands/finalize.py +0 -0
  21. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/batch/commands/list_jobs.py +0 -0
  22. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/batch/commands/local.py +0 -0
  23. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/batch/commands/logs.py +0 -0
  24. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/batch/commands/retry.py +0 -0
  25. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/batch/commands/status.py +0 -0
  26. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/batch/commands/submit.py +0 -0
  27. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/batch/job_id.py +0 -0
  28. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/batch/manifest.py +0 -0
  29. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/cloud_commands.py +0 -0
  30. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engine1/__init__.py +0 -0
  31. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engine1/engine_core.py +0 -0
  32. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engine1/engine_lifecycle.py +0 -0
  33. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engine1/engine_maintenance.py +0 -0
  34. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engine1/engine_management.py +0 -0
  35. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engine1/shared.py +0 -0
  36. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engine1/studio_commands.py +0 -0
  37. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engines_studios/__init__.py +0 -0
  38. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engines_studios/api_client.py +0 -0
  39. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engines_studios/auth.py +0 -0
  40. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engines_studios/engine-studio-cli.md +0 -0
  41. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engines_studios/engine_commands.py +0 -0
  42. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engines_studios/progress.py +0 -0
  43. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engines_studios/simulators/cli-simulators.md +0 -0
  44. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engines_studios/simulators/demo.sh +0 -0
  45. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engines_studios/simulators/engine_list_simulator.py +0 -0
  46. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engines_studios/simulators/engine_status_simulator.py +0 -0
  47. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engines_studios/simulators/idle_status_simulator.py +0 -0
  48. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engines_studios/simulators/simulator_utils.py +0 -0
  49. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engines_studios/simulators/studio_list_simulator.py +0 -0
  50. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engines_studios/simulators/studio_status_simulator.py +0 -0
  51. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engines_studios/ssh_config.py +0 -0
  52. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/github_commands.py +0 -0
  53. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/main.py +0 -0
  54. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/swarm_commands.py +0 -0
  55. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/utility_commands.py +0 -0
  56. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/deployment/base.py +0 -0
  57. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/deployment/deploy_aws.py +0 -0
  58. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
  59. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/deployment/deploy_utils.py +0 -0
  60. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/deployment/job_runner.py +0 -0
  61. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/deployment/processors.py +0 -0
  62. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/deployment/swarm.py +0 -0
  63. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/embedders.py +0 -0
  64. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/fasta.py +0 -0
  65. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/file_ops.py +0 -0
  66. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/h5.py +0 -0
  67. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/intake/gcp.py +0 -0
  68. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/intake/gtdb.py +0 -0
  69. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/intake/kegg.py +0 -0
  70. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/intake/mmseqs.py +0 -0
  71. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/intake/structure.py +0 -0
  72. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/intake/uniprot.py +0 -0
  73. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/logs.py +0 -0
  74. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/sqlite.py +0 -0
  75. {dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/warehouse.py +0 -0
{dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: dayhoff-tools
3
- Version: 1.14.2
3
+ Version: 1.14.3
4
4
  Summary: Common tools for all the repos at Dayhoff Labs
5
5
  Author: Daniel Martin-Alarcon
6
6
  Author-email: dma@dayhofflabs.com
{dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/dayhoff_tools/cli/engines_studios/studio_commands.py RENAMED
@@ -517,7 +517,7 @@ def attach_studio(
517
517
  click.echo(f"\nConnect with:")
518
518
  click.echo(f" ssh {engine_name}")
519
519
 
520
- except Exception as e:
520
+ except Exception:
521
521
  # Get final status to show error details
522
522
  try:
523
523
  final_status = client.get_attachment_progress(operation_id)
@@ -540,7 +540,7 @@ def attach_studio(
540
540
  click.echo(f"Failed at step: {failed_step['name']}")
541
541
  if failed_step.get("error"):
542
542
  click.echo(f"Error: {failed_step['error']}")
543
- except:
543
+ except Exception:
544
544
  pass
545
545
 
546
546
  raise
{dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/pyproject.toml RENAMED
@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
5
5
 
6
6
  [project]
7
7
  name = "dayhoff-tools"
8
- version = "1.14.2"
8
+ version = "1.14.3"
9
9
  description = "Common tools for all the repos at Dayhoff Labs"
10
10
  authors = [
11
11
  {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}
{dayhoff_tools-1.14.2 → dayhoff_tools-1.14.3}/README.md RENAMED
File without changes