dayhoff-tools 1.13.12__tar.gz → 1.13.13__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (53) hide show
  1. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/PKG-INFO +1 -1
  2. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/main.py +2 -0
  3. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/pyproject.toml +1 -1
  4. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/README.md +0 -0
  5. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/__init__.py +0 -0
  6. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/chemistry/standardizer.py +0 -0
  7. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/chemistry/utils.py +0 -0
  8. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/__init__.py +0 -0
  9. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/cloud_commands.py +0 -0
  10. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engine1/__init__.py +0 -0
  11. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engine1/engine_core.py +0 -0
  12. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engine1/engine_lifecycle.py +0 -0
  13. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engine1/engine_maintenance.py +0 -0
  14. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engine1/engine_management.py +0 -0
  15. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engine1/shared.py +0 -0
  16. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engine1/studio_commands.py +0 -0
  17. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engines_studios/__init__.py +0 -0
  18. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engines_studios/api_client.py +0 -0
  19. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engines_studios/auth.py +0 -0
  20. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engines_studios/engine-studio-cli.md +0 -0
  21. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engines_studios/engine_commands.py +0 -0
  22. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engines_studios/progress.py +0 -0
  23. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engines_studios/simulators/cli-simulators.md +0 -0
  24. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engines_studios/simulators/demo.sh +0 -0
  25. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engines_studios/simulators/engine_list_simulator.py +0 -0
  26. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engines_studios/simulators/engine_status_simulator.py +0 -0
  27. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engines_studios/simulators/idle_status_simulator.py +0 -0
  28. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engines_studios/simulators/simulator_utils.py +0 -0
  29. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engines_studios/simulators/studio_list_simulator.py +0 -0
  30. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engines_studios/simulators/studio_status_simulator.py +0 -0
  31. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/engines_studios/studio_commands.py +0 -0
  32. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/swarm_commands.py +0 -0
  33. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/utility_commands.py +0 -0
  34. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/deployment/base.py +0 -0
  35. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/deployment/deploy_aws.py +0 -0
  36. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
  37. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/deployment/deploy_utils.py +0 -0
  38. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/deployment/job_runner.py +0 -0
  39. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/deployment/processors.py +0 -0
  40. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/deployment/swarm.py +0 -0
  41. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/embedders.py +0 -0
  42. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/fasta.py +0 -0
  43. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/file_ops.py +0 -0
  44. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/h5.py +0 -0
  45. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/intake/gcp.py +0 -0
  46. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/intake/gtdb.py +0 -0
  47. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/intake/kegg.py +0 -0
  48. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/intake/mmseqs.py +0 -0
  49. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/intake/structure.py +0 -0
  50. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/intake/uniprot.py +0 -0
  51. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/logs.py +0 -0
  52. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/sqlite.py +0 -0
  53. {dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/warehouse.py +0 -0
{dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: dayhoff-tools
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- Version: 1.13.12
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+ Version: 1.13.13
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
{dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/dayhoff_tools/cli/main.py RENAMED
@@ -78,6 +78,7 @@ app.add_typer(studio_app, name="studio", help="Manage persistent development stu
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  @app.command(
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  "engine2",
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  context_settings={"allow_extra_args": True, "ignore_unknown_options": True},
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+ add_help_option=False,
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  )
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  def engine2_cmd(ctx: typer.Context):
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  """Manage engines (new implementation with progress tracking)."""
@@ -90,6 +91,7 @@ def engine2_cmd(ctx: typer.Context):
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  @app.command(
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  "studio2",
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  context_settings={"allow_extra_args": True, "ignore_unknown_options": True},
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+ add_help_option=False,
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  )
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  def studio2_cmd(ctx: typer.Context):
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  """Manage studios (new implementation with progress tracking)."""
{dayhoff_tools-1.13.12 → dayhoff_tools-1.13.13}/pyproject.toml RENAMED
@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
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  [project]
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  name = "dayhoff-tools"
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- version = "1.13.12"
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+ version = "1.13.13"
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  description = "Common tools for all the repos at Dayhoff Labs"
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  authors = [
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  {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}