dayhoff-tools 1.11.9__tar.gz → 1.11.10__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/PKG-INFO +1 -2
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/cli/cloud_commands.py +8 -4
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/pyproject.toml +1 -2
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/README.md +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/__init__.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/chemistry/standardizer.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/chemistry/utils.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/cli/__init__.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/cli/engine/__init__.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/cli/engine/engine_core.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/cli/engine/engine_lifecycle.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/cli/engine/engine_maintenance.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/cli/engine/engine_management.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/cli/engine/shared.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/cli/engine/studio_commands.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/cli/main.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/cli/swarm_commands.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/cli/utility_commands.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/deployment/base.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/deployment/deploy_aws.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/deployment/deploy_utils.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/deployment/job_runner.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/deployment/processors.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/deployment/swarm.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/embedders.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/fasta.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/file_ops.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/h5.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/intake/gcp.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/intake/gtdb.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/intake/kegg.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/intake/mmseqs.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/intake/structure.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/intake/uniprot.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/logs.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/sqlite.py +0 -0
 - {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/warehouse.py +0 -0
 
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            Metadata-Version: 2.4
         
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            Name: dayhoff-tools
         
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            Version: 1.11. 
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            Version: 1.11.10
         
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            Summary: Common tools for all the repos at Dayhoff Labs
         
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            Author: Daniel Martin-Alarcon
         
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            Author-email: dma@dayhofflabs.com
         
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         @@ -29,7 +29,6 @@ Requires-Dist: pyyaml (>=6.0) 
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            Requires-Dist: questionary (>=2.0.1)
         
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            Requires-Dist: rdkit-pypi (>=2022.9.5) ; extra == "full"
         
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            Requires-Dist: requests (>=2.31.0)
         
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            Requires-Dist: seaborn (>=0.13.2)
         
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            Requires-Dist: sentencepiece (>=0.2.0) ; extra == "embedders"
         
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            Requires-Dist: sentencepiece (>=0.2.0) ; extra == "full"
         
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            Requires-Dist: sqlalchemy (>=2.0.40,<3.0.0) ; extra == "full"
         
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         @@ -485,10 +485,14 @@ def _get_current_aws_profile() -> str: 
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                    cmd = [aws_path, "configure", "list", "--no-cli-pager"]
         
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                    _, stdout, _ = _run_command(cmd, capture=True, check=False)
         
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                    # Extract profile from output
         
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                    # Extract profile from output (format: "profile    : <value>    : <type>    : <location>")
         
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                    # Match the line starting with "profile" and capture the value after the first colon
         
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                    profile_match = re.search(r"^profile\s+:\s+(\S+)", stdout, re.MULTILINE)
         
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                    if profile_match:
         
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                        profile_value = profile_match.group(1)
         
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                        # Check if the profile is actually set (not "<not" or "not")
         
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                        if profile_value not in ("<not", "not"):
         
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                            return profile_value
         
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                except:
         
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                    pass
         
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            [project]
         
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            name = "dayhoff-tools"
         
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            version = "1.11. 
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            version = "1.11.10"
         
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            description = "Common tools for all the repos at Dayhoff Labs"
         
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            authors = [
         
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                {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}
         
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                "questionary>=2.0.1",
         
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                "tzdata>=2025.2",
         
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                "boto3>=1.36.8",
         
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                "seaborn>=0.13.2",
         
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            ]
         
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            requires-python = ">=3.10,<4.0"
         
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        {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/cli/engine/engine_maintenance.py
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        {dayhoff_tools-1.11.9 → dayhoff_tools-1.11.10}/dayhoff_tools/cli/engine/engine_management.py
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