dayhoff-tools 1.1.9__tar.gz → 1.1.10__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/PKG-INFO +1 -1
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/deployment/processors.py +16 -2
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/pyproject.toml +1 -1
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/README.md +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/__init__.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/chemistry/standardizer.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/chemistry/utils.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/cli/__init__.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/cli/cloud_commands.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/cli/main.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/cli/swarm_commands.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/cli/utility_commands.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/deployment/base.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/deployment/deploy_aws.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/deployment/deploy_utils.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/deployment/job_runner.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/deployment/swarm.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/embedders.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/fasta.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/file_ops.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/h5.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/intake/gcp.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/intake/gtdb.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/intake/kegg.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/intake/mmseqs.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/intake/structure.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/intake/uniprot.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/logs.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/sqlite.py +0 -0
- {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/warehouse.py +0 -0
@@ -459,8 +459,22 @@ class MMSeqsProfileProcessor(Processor):
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logger.info(
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f"Cleaned up MMseqs2 temporary directory: {mmseqs_temp_dir}"
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)
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-
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#
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+
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# Clean up the copied input file (local_target_file) from the run_base_dir
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# so it does not get uploaded with the results.
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if local_target_file.exists():
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try:
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local_target_file.unlink()
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logger.info(
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f"Cleaned up copied input file from run directory: {local_target_file}"
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)
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except OSError as e:
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logger.error(
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f"Error deleting copied input file {local_target_file}: {e}"
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)
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# The run_base_dir (containing only the final, meaningfully named output files)
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# will be cleaned up by the Operator after its contents are uploaded.
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return str(
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run_base_dir
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@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
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[project]
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name = "dayhoff-tools"
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version = "1.1.
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version = "1.1.10"
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description = "Common tools for all the repos at Dayhoff Labs"
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authors = [
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{name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}
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