dayhoff-tools 1.1.9__tar.gz → 1.1.10__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (31) hide show
  1. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/PKG-INFO +1 -1
  2. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/deployment/processors.py +16 -2
  3. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/pyproject.toml +1 -1
  4. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/README.md +0 -0
  5. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/__init__.py +0 -0
  6. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/chemistry/standardizer.py +0 -0
  7. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/chemistry/utils.py +0 -0
  8. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/cli/__init__.py +0 -0
  9. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/cli/cloud_commands.py +0 -0
  10. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/cli/main.py +0 -0
  11. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/cli/swarm_commands.py +0 -0
  12. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/cli/utility_commands.py +0 -0
  13. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/deployment/base.py +0 -0
  14. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/deployment/deploy_aws.py +0 -0
  15. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
  16. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/deployment/deploy_utils.py +0 -0
  17. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/deployment/job_runner.py +0 -0
  18. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/deployment/swarm.py +0 -0
  19. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/embedders.py +0 -0
  20. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/fasta.py +0 -0
  21. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/file_ops.py +0 -0
  22. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/h5.py +0 -0
  23. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/intake/gcp.py +0 -0
  24. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/intake/gtdb.py +0 -0
  25. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/intake/kegg.py +0 -0
  26. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/intake/mmseqs.py +0 -0
  27. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/intake/structure.py +0 -0
  28. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/intake/uniprot.py +0 -0
  29. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/logs.py +0 -0
  30. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/sqlite.py +0 -0
  31. {dayhoff_tools-1.1.9 → dayhoff_tools-1.1.10}/dayhoff_tools/warehouse.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.1.9
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+ Version: 1.1.10
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
@@ -459,8 +459,22 @@ class MMSeqsProfileProcessor(Processor):
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  logger.info(
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  f"Cleaned up MMseqs2 temporary directory: {mmseqs_temp_dir}"
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  )
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- # The local_target_file (copy of input) inside run_base_dir will be cleaned up
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- # by the Operator when run_base_dir itself is deleted after upload.
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+
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+ # Clean up the copied input file (local_target_file) from the run_base_dir
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+ # so it does not get uploaded with the results.
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+ if local_target_file.exists():
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+ try:
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+ local_target_file.unlink()
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+ logger.info(
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+ f"Cleaned up copied input file from run directory: {local_target_file}"
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+ )
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+ except OSError as e:
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+ logger.error(
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+ f"Error deleting copied input file {local_target_file}: {e}"
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+ )
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+
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+ # The run_base_dir (containing only the final, meaningfully named output files)
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+ # will be cleaned up by the Operator after its contents are uploaded.
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  return str(
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  run_base_dir
@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
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  [project]
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  name = "dayhoff-tools"
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- version = "1.1.9"
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+ version = "1.1.10"
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  description = "Common tools for all the repos at Dayhoff Labs"
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  authors = [
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  {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}
File without changes