dayhoff-tools 1.1.43__tar.gz → 1.2.1__tar.gz

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Files changed (31) hide show
  1. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/PKG-INFO +1 -1
  2. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/README.md +0 -0
  3. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/__init__.py +0 -0
  4. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/chemistry/standardizer.py +0 -0
  5. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/chemistry/utils.py +0 -0
  6. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/cli/__init__.py +0 -0
  7. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/cli/cloud_commands.py +8 -1
  8. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/cli/main.py +0 -0
  9. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/cli/swarm_commands.py +0 -0
  10. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/cli/utility_commands.py +0 -0
  11. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/deployment/base.py +2 -2
  12. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/deployment/deploy_aws.py +0 -0
  13. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
  14. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/deployment/job_runner.py +0 -0
  15. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/deployment/processors.py +0 -0
  16. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/deployment/swarm.py +0 -0
  17. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/embedders.py +0 -0
  18. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/fasta.py +0 -0
  19. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/file_ops.py +0 -0
  20. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/h5.py +0 -0
  21. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/intake/gcp.py +0 -0
  22. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/intake/gtdb.py +0 -0
  23. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/intake/kegg.py +0 -0
  24. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/intake/mmseqs.py +0 -0
  25. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/intake/structure.py +0 -0
  26. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/intake/uniprot.py +0 -0
  27. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/logs.py +0 -0
  28. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/sqlite.py +0 -0
  29. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/warehouse.py +0 -0
  30. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/pyproject.toml +1 -1
  31. {dayhoff_tools-1.1.43 → dayhoff_tools-1.2.1}/dayhoff_tools/deployment/deploy_utils.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.1.43
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+ Version: 1.2.1
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
File without changes
@@ -987,7 +987,14 @@ def aws_status(
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  # Get detailed identity information
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  aws_path = _find_executable("aws")
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  _run_command(
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- [aws_path, "sts", "get-caller-identity", "--profile", target_profile]
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+ [
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+ aws_path,
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+ "sts",
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+ "get-caller-identity",
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+ "--profile",
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+ target_profile,
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+ "--no-cli-pager",
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+ ]
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  )
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  else:
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  print(f"Credential status: {RED}not authenticated{NC}")
@@ -281,7 +281,7 @@ def run_container(config: dict, image_uri: str, mode: str) -> None:
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  4. Handles container logs for detached mode
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  The container name is generated using:
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- - Username (from LOCAL_USER env var)
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+ - Username (from LOCAL_USER or USER env var)
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  - Timestamp (YYYYMMDD_HHMMSS format)
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  Args:
@@ -299,7 +299,7 @@ def run_container(config: dict, image_uri: str, mode: str) -> None:
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  )
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  # Generate unique container name
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- username = os.getenv("LOCAL_USER", "unknown_user")
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+ username = os.getenv("LOCAL_USER") or os.getenv("USER", "unknown_user")
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  timestamp = datetime.datetime.now().strftime("%Y%m%d_%H%M%S")
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  container_name = f"{username}_job_{timestamp}"
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@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
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  [project]
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  name = "dayhoff-tools"
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- version = "1.1.43"
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+ version = "1.2.1"
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  description = "Common tools for all the repos at Dayhoff Labs"
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  authors = [
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  {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}