dayhoff-tools 1.1.30__tar.gz → 1.1.31__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (31) hide show
  1. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/PKG-INFO +2 -1
  2. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/deployment/job_runner.py +2 -4
  3. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/pyproject.toml +2 -1
  4. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/README.md +0 -0
  5. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/__init__.py +0 -0
  6. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/chemistry/standardizer.py +0 -0
  7. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/chemistry/utils.py +0 -0
  8. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/cli/__init__.py +0 -0
  9. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/cli/cloud_commands.py +0 -0
  10. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/cli/main.py +0 -0
  11. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/cli/swarm_commands.py +0 -0
  12. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/cli/utility_commands.py +0 -0
  13. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/deployment/base.py +0 -0
  14. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/deployment/deploy_aws.py +0 -0
  15. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
  16. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/deployment/deploy_utils.py +0 -0
  17. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/deployment/processors.py +0 -0
  18. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/deployment/swarm.py +0 -0
  19. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/embedders.py +0 -0
  20. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/fasta.py +0 -0
  21. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/file_ops.py +0 -0
  22. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/h5.py +0 -0
  23. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/intake/gcp.py +0 -0
  24. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/intake/gtdb.py +0 -0
  25. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/intake/kegg.py +0 -0
  26. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/intake/mmseqs.py +0 -0
  27. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/intake/structure.py +0 -0
  28. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/intake/uniprot.py +0 -0
  29. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/logs.py +0 -0
  30. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/sqlite.py +0 -0
  31. {dayhoff_tools-1.1.30 → dayhoff_tools-1.1.31}/dayhoff_tools/warehouse.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.1.30
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+ Version: 1.1.31
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
@@ -38,6 +38,7 @@ Requires-Dist: tqdm (>=4.67.1) ; extra == "full"
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  Requires-Dist: transformers (==4.36.2) ; extra == "full"
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  Requires-Dist: transformers (>=4.36.2) ; extra == "embedders"
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  Requires-Dist: typer (>=0.9.0)
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+ Requires-Dist: tzdata (>=2025.2)
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  Description-Content-Type: text/markdown
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  # dayhoff-tools
@@ -94,9 +94,9 @@ def run_command() -> None:
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  stderr=None, # Use parent's stderr
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  )
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- logger.info("Command completed successfully")
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+ logger.info("Job command completed successfully")
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  except subprocess.CalledProcessError as e:
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- logger.error(f"Command failed with return code: {e.returncode}")
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+ logger.error(f"Job command failed with return code: {e.returncode}")
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  raise
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  except Exception as e:
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  logger.error(f"Error executing command: {str(e)}")
@@ -153,8 +153,6 @@ def run_job(
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  if mode in ["execute", "setup_and_execute"]:
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  run_command()
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- logger.info("Job completed successfully")
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-
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  except Exception as e:
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  logger.error(f"Job failed with error: {str(e)}", exc_info=True)
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  sys.exit(1)
@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
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  [project]
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  name = "dayhoff-tools"
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- version = "1.1.30"
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+ version = "1.1.31"
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  description = "Common tools for all the repos at Dayhoff Labs"
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  authors = [
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  {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}
@@ -19,6 +19,7 @@ dependencies = [
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  "typer>=0.9.0",
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  "toml>=0.10",
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  "questionary>=2.0.1",
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+ "tzdata>=2025.2",
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  ]
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  requires-python = ">=3.10,<4.0"
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File without changes