dayhoff-tools 1.1.2__tar.gz → 1.1.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (30) hide show
  1. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/PKG-INFO +2 -1
  2. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/cli/utility_commands.py +1 -1
  3. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/pyproject.toml +3 -2
  4. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/README.md +0 -0
  5. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/__init__.py +0 -0
  6. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/chemistry/standardizer.py +0 -0
  7. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/chemistry/utils.py +0 -0
  8. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/cli/__init__.py +0 -0
  9. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/cli/cloud_commands.py +0 -0
  10. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/cli/main.py +0 -0
  11. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/cli/swarm_commands.py +0 -0
  12. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/deployment/base.py +0 -0
  13. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/deployment/deploy_aws.py +0 -0
  14. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
  15. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/deployment/deploy_utils.py +0 -0
  16. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/deployment/job_runner.py +0 -0
  17. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/deployment/processors.py +0 -0
  18. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/deployment/swarm.py +0 -0
  19. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/embedders.py +0 -0
  20. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/fasta.py +0 -0
  21. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/file_ops.py +0 -0
  22. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/gcp.py +0 -0
  23. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/h5.py +0 -0
  24. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/kegg.py +0 -0
  25. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/logs.py +0 -0
  26. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/mmseqs.py +0 -0
  27. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/sqlite.py +0 -0
  28. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/structure.py +0 -0
  29. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/uniprot.py +0 -0
  30. {dayhoff_tools-1.1.2 → dayhoff_tools-1.1.4}/dayhoff_tools/warehouse.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.1.2
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+ Version: 1.1.4
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
@@ -25,6 +25,7 @@ Requires-Dist: questionary (>=2.0.1)
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  Requires-Dist: rdkit-pypi (>=2022.9.5)
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  Requires-Dist: requests (>=2.31.0)
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  Requires-Dist: requests (>=2.31.0) ; extra == "lite"
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+ Requires-Dist: sentencepiece (>=0.2.0)
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  Requires-Dist: sqlalchemy (>=2.0.40,<3.0.0)
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  Requires-Dist: toml (>=0.10)
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  Requires-Dist: transformers (==4.36.2)
@@ -489,7 +489,7 @@ def update_dependencies(
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  try:
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  content = pyproject_path.read_text()
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  pattern = re.compile(
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- "^(\s*['\"])dayhoff-tools(?:[><=~^][^'\"\\[,]*)?(['\"]\S*)$",
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+ "^(\s*['\"])dayhoff-tools(?:[><=~^][^'\"\[,]*)?(['\"].*)$", # Match rest of line
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  re.MULTILINE,
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  )
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  package_name = "dayhoff-tools"
@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
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  [project]
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  name = "dayhoff-tools"
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- version = "1.1.2"
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+ version = "1.1.4"
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  description = "Common tools for all the repos at Dayhoff Labs"
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  authors = [
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  {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}
@@ -28,6 +28,7 @@ dependencies = [
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  "rdkit-pypi>=2022.9.5",
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  "sqlalchemy (>=2.0.40,<3.0.0)",
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  "transformers==4.36.2",
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+ "sentencepiece>=0.2.0",
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  ]
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  requires-python = ">=3.10,<4.0"
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@@ -74,4 +75,4 @@ dev = [
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  ]
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  [project.scripts]
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- dh = "dayhoff_tools.cli.main:app"
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+ dh = "dayhoff_tools.cli.main:app"
File without changes