dayhoff-tools 1.1.23__tar.gz → 1.1.25__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (31) hide show
  1. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/PKG-INFO +1 -1
  2. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/cli/utility_commands.py +17 -9
  3. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/pyproject.toml +1 -1
  4. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/README.md +0 -0
  5. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/__init__.py +0 -0
  6. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/chemistry/standardizer.py +0 -0
  7. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/chemistry/utils.py +0 -0
  8. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/cli/__init__.py +0 -0
  9. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/cli/cloud_commands.py +0 -0
  10. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/cli/main.py +0 -0
  11. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/cli/swarm_commands.py +0 -0
  12. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/deployment/base.py +0 -0
  13. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/deployment/deploy_aws.py +0 -0
  14. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
  15. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/deployment/deploy_utils.py +0 -0
  16. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/deployment/job_runner.py +0 -0
  17. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/deployment/processors.py +0 -0
  18. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/deployment/swarm.py +0 -0
  19. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/embedders.py +0 -0
  20. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/fasta.py +0 -0
  21. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/file_ops.py +0 -0
  22. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/h5.py +0 -0
  23. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/intake/gcp.py +0 -0
  24. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/intake/gtdb.py +0 -0
  25. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/intake/kegg.py +0 -0
  26. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/intake/mmseqs.py +0 -0
  27. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/intake/structure.py +0 -0
  28. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/intake/uniprot.py +0 -0
  29. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/logs.py +0 -0
  30. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/sqlite.py +0 -0
  31. {dayhoff_tools-1.1.23 → dayhoff_tools-1.1.25}/dayhoff_tools/warehouse.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.1.23
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+ Version: 1.1.25
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
@@ -573,19 +573,27 @@ def update_dependencies(
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  print(f"Updating {pyproject_path} version constraint...")
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  try:
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  content = pyproject_path.read_text()
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- package_name_re = re.escape(
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- "dayhoff-tools"
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- ) # Use the actual package name
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+
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+ package_name = "dayhoff-tools"
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+ package_name_esc = re.escape(package_name)
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+
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+ # Regex to match the dependency line, with optional extras and version spec
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  pattern = re.compile(
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- rf"^(\\s*['\"])({package_name_re})(\\[[^\\]]+\\])?(?:[^'\"[\,\\s]*)?(['\"].*)$",
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+ rf"^(\s*['\"]){package_name_esc}(\[[^]]+\])?(?:[><=~^][^'\"]*)?(['\"].*)$",
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  re.MULTILINE,
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  )
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- # package_name variable is still 'dayhoff-tools'
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+
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  new_constraint_text = f">={locked_version}"
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- replacement_string = rf"\\g<1>\\g<2>\\g<3>{new_constraint_text}\\g<4>"
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- new_content, num_replacements = pattern.subn(
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- replacement_string, content
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- )
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+
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+ def _repl(match: re.Match):
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+ prefix = match.group(1)
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+ extras = match.group(2) or ""
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+ suffix = match.group(3)
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+ return (
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+ f"{prefix}{package_name}{extras}{new_constraint_text}{suffix}"
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+ )
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+
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+ new_content, num_replacements = pattern.subn(_repl, content)
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  if num_replacements > 0:
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  pyproject_path.write_text(new_content)
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  print(
@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
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  [project]
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  name = "dayhoff-tools"
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- version = "1.1.23"
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+ version = "1.1.25"
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  description = "Common tools for all the repos at Dayhoff Labs"
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  authors = [
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  {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}
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