dayhoff-tools 1.1.20__tar.gz → 1.1.21__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (32) hide show
  1. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/PKG-INFO +1 -1
  2. dayhoff_tools-1.1.21/dayhoff_tools/__init__.py +10 -0
  3. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/cli/utility_commands.py +1 -10
  4. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/pyproject.toml +1 -1
  5. dayhoff_tools-1.1.20/dayhoff_tools/cli/__init__.py +0 -0
  6. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/README.md +0 -0
  7. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/chemistry/standardizer.py +0 -0
  8. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/chemistry/utils.py +0 -0
  9. {dayhoff_tools-1.1.20/dayhoff_tools → dayhoff_tools-1.1.21/dayhoff_tools/cli}/__init__.py +0 -0
  10. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/cli/cloud_commands.py +0 -0
  11. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/cli/main.py +0 -0
  12. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/cli/swarm_commands.py +0 -0
  13. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/deployment/base.py +0 -0
  14. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/deployment/deploy_aws.py +0 -0
  15. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
  16. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/deployment/deploy_utils.py +0 -0
  17. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/deployment/job_runner.py +0 -0
  18. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/deployment/processors.py +0 -0
  19. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/deployment/swarm.py +0 -0
  20. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/embedders.py +0 -0
  21. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/fasta.py +0 -0
  22. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/file_ops.py +0 -0
  23. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/h5.py +0 -0
  24. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/intake/gcp.py +0 -0
  25. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/intake/gtdb.py +0 -0
  26. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/intake/kegg.py +0 -0
  27. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/intake/mmseqs.py +0 -0
  28. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/intake/structure.py +0 -0
  29. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/intake/uniprot.py +0 -0
  30. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/logs.py +0 -0
  31. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/sqlite.py +0 -0
  32. {dayhoff_tools-1.1.20 → dayhoff_tools-1.1.21}/dayhoff_tools/warehouse.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.1.20
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+ Version: 1.1.21
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
@@ -0,0 +1,10 @@
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+ import importlib.metadata
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+
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+ try:
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+ # The package name here should match the 'name' field in your pyproject.toml
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+ __version__ = importlib.metadata.version("dayhoff-tools")
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+ except importlib.metadata.PackageNotFoundError:
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+ # This is a fallback for when the package might not be installed (e.g., running from source
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+ # without installation, or during development). You can set it to None, "unknown",
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+ # or handle it as you see fit.
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+ __version__ = "unknown"
@@ -465,16 +465,7 @@ def install_dependencies(
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  print(f"Running command: {BLUE}{' '.join(pip_install_cmd)}{RESET}")
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  subprocess.run(pip_install_cmd, check=True)
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- # Step 2b: Sync other dependency groups (e.g., dev)
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- # We use --no-install-project here because the project itself was just installed.
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- # --all-groups will ensure other groups like 'dev' are synced.
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- print("Syncing other dependency groups (e.g., dev)...")
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- sync_cmd = ["uv", "sync", "--all-groups", "--no-install-project"]
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- print(f"Running command: {BLUE}{' '.join(sync_cmd)}{RESET}")
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- subprocess.run(sync_cmd, check=True)
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- print(
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- "Project installed with 'full' extras and other dependency groups synced successfully."
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- )
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+ print("Project installed with 'full' extras successfully.")
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  else:
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  # Original behavior: Sync environment without installing the project
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  print(
@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
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  [project]
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  name = "dayhoff-tools"
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- version = "1.1.20"
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+ version = "1.1.21"
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  description = "Common tools for all the repos at Dayhoff Labs"
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  authors = [
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  {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}
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