dayhoff-tools 1.1.11__tar.gz → 1.1.12__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (31) hide show
  1. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/PKG-INFO +1 -1
  2. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/deployment/processors.py +5 -3
  3. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/pyproject.toml +1 -1
  4. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/README.md +0 -0
  5. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/__init__.py +0 -0
  6. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/chemistry/standardizer.py +0 -0
  7. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/chemistry/utils.py +0 -0
  8. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/cli/__init__.py +0 -0
  9. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/cli/cloud_commands.py +0 -0
  10. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/cli/main.py +0 -0
  11. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/cli/swarm_commands.py +0 -0
  12. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/cli/utility_commands.py +0 -0
  13. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/deployment/base.py +0 -0
  14. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/deployment/deploy_aws.py +0 -0
  15. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
  16. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/deployment/deploy_utils.py +0 -0
  17. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/deployment/job_runner.py +0 -0
  18. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/deployment/swarm.py +0 -0
  19. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/embedders.py +0 -0
  20. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/fasta.py +0 -0
  21. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/file_ops.py +0 -0
  22. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/h5.py +0 -0
  23. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/intake/gcp.py +0 -0
  24. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/intake/gtdb.py +0 -0
  25. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/intake/kegg.py +0 -0
  26. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/intake/mmseqs.py +0 -0
  27. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/intake/structure.py +0 -0
  28. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/intake/uniprot.py +0 -0
  29. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/logs.py +0 -0
  30. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/sqlite.py +0 -0
  31. {dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/warehouse.py +0 -0
{dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.1.11
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+ Version: 1.1.12
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
{dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/dayhoff_tools/deployment/processors.py RENAMED
@@ -411,11 +411,13 @@ class MMSeqsProfileProcessor(Processor):
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  [
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  "mmseqs",
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  "createsubdb",
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- str(result_db),
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- str(target_db),
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+ str(
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+ target_db
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+ ), # inputDB: database to filter (all target sequences)
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+ str(result_db), # filterDB: IDs appearing in result_db (2nd column)
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  str(hits_db),
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  "--subdb-mode",
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- "1", # Use mode 1 to extract target sequences (2nd column) from result_db
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+ "1", # Use mode 1 to extract target sequences (2nd column)
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  ],
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  "Create hits subDB from target_db",
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  run_base_dir,
{dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/pyproject.toml RENAMED
@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
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  [project]
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  name = "dayhoff-tools"
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- version = "1.1.11"
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+ version = "1.1.12"
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  description = "Common tools for all the repos at Dayhoff Labs"
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  authors = [
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  {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}
{dayhoff_tools-1.1.11 → dayhoff_tools-1.1.12}/README.md RENAMED
File without changes