dayhoff-tools 1.0.16__tar.gz → 1.0.17__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/PKG-INFO +1 -1
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/cli/utility_commands.py +12 -13
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/pyproject.toml +2 -2
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/README.md +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/__init__.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/chemistry/standardizer.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/chemistry/utils.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/cli/__init__.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/cli/cloud_commands.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/cli/main.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/cli/swarm_commands.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/deployment/base.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/deployment/deploy_aws.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/deployment/deploy_gcp.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/deployment/deploy_utils.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/deployment/job_runner.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/deployment/processors.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/deployment/swarm.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/embedders.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/fasta.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/file_ops.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/gcp.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/h5.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/kegg.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/logs.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/mmseqs.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/sqlite.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/structure.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/uniprot.py +0 -0
- {dayhoff_tools-1.0.16 → dayhoff_tools-1.0.17}/dayhoff_tools/warehouse.py +0 -0
@@ -357,22 +357,21 @@ def build_and_upload_wheel(bump_part: str = "patch"):
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def update_dayhoff_tools():
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"""Update the dayhoff-tools package to the latest version using uv.
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Runs `uv add dayhoff-tools@latest
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dayhoff-tools
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Runs `uv add dayhoff-tools@latest`. Note: This command might not correctly
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update dayhoff-tools if it's only listed in a top-level [dependency-groups]
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table in the target project's pyproject.toml. It works best for dependencies
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in [project.dependencies] or [project.optional-dependencies].
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"""
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try:
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print(
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)
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subprocess.run(
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["uv", "add", "dayhoff-tools@latest", "--group", "common"], check=True
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)
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print(
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"Update complete! Run 'uv sync --group common' or relevant sync command if needed."
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)
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print("Attempting to update dayhoff-tools to the latest version using uv...")
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# Reverted to simple uv add, acknowledging limitations with top-level groups
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subprocess.run(["uv", "add", "dayhoff-tools@latest"], check=True)
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print("Update attempt complete! Check pyproject.toml and run sync if needed.")
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except subprocess.CalledProcessError as e:
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print(f"Error occurred while
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print(f"Error occurred while attempting update: {e}")
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except FileNotFoundError:
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print("Error: 'uv' command not found. Is uv installed and in PATH?")
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sys.exit(1)
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def sync_dependencies():
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@@ -4,7 +4,7 @@ build-backend = "poetry.core.masonry.api"
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[project]
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name = "dayhoff-tools"
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version = "1.0.
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version = "1.0.17"
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description = "Common tools for all the repos at Dayhoff Labs"
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authors = [
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{name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}
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@@ -36,7 +36,7 @@ full = [
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"torchvision>=0.16.0",
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]
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[
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[dependency-groups]
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common = [
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"black>=25.1.0,<26",
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"boto3>=1.36.8",
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