dayhoff-tools 1.0.14__tar.gz → 1.0.16__tar.gz

{dayhoff_tools-1.0.14 → dayhoff_tools-1.0.16}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: dayhoff-tools
-Version: 1.0.14
+Version: 1.0.16
 Summary: Common tools for all the repos at Dayhoff Labs
 Author: Daniel Martin-Alarcon
 Author-email: dma@dayhofflabs.com
@@ -23,8 +23,8 @@ Requires-Dist: questionary (>=2.0.1) ; extra == "full"
 Requires-Dist: rdkit-pypi (>=2022.9.5) ; extra == "full"
 Requires-Dist: requests (>=2.31.0)
 Requires-Dist: sqlalchemy (>=2.0.40,<3.0.0) ; extra == "full"
-Requires-Dist: torch (==2.4.0+cu121) ; extra == "full"
-Requires-Dist: torchvision (==0.19.0+cu121) ; extra == "full"
+Requires-Dist: torch (>=2.1.0) ; extra == "full"
+Requires-Dist: torchvision (>=0.16.0) ; extra == "full"
 Requires-Dist: transformers (==4.36.2) ; extra == "full"
 Requires-Dist: typer (>=0.9.0)
 Description-Content-Type: text/markdown

{dayhoff_tools-1.0.14 → dayhoff_tools-1.0.16}/dayhoff_tools/cli/utility_commands.py

@@ -357,19 +357,22 @@ def build_and_upload_wheel(bump_part: str = "patch"):
 def update_dayhoff_tools():
     """Update the dayhoff-tools package to the latest version using uv.
 
-    Runs `uv add dayhoff-tools@latest` which updates pyproject.toml and uv.lock.
+    Runs `uv add dayhoff-tools@latest --group common` which attempts to update
+    dayhoff-tools within the 'common' dependency group.
     """
     try:
-        print("Updating dayhoff-tools to the latest version using uv...")
-        # Use uv add to update the package and lock file
-        subprocess.run(["uv", "add", "dayhoff-tools@latest"], check=True)
-        print("Update complete!")
+        print(
+            "Updating dayhoff-tools to the latest version in 'common' group using uv..."
+        )
+        # Use uv add with --group common to explicitly target the dependency
+        subprocess.run(
+            ["uv", "add", "dayhoff-tools@latest", "--group", "common"], check=True
+        )
+        print(
+            "Update complete! Run 'uv sync --group common' or relevant sync command if needed."
+        )
     except subprocess.CalledProcessError as e:
         print(f"Error occurred while updating: {e}")
-        sys.exit(1)
-    except FileNotFoundError:
-        print("Error: 'uv' command not found. Is uv installed and in PATH?")
-        sys.exit(1)
 
 
 def sync_dependencies():

{dayhoff_tools-1.0.14 → dayhoff_tools-1.0.16}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "poetry.core.masonry.api"
 
 [project]
 name = "dayhoff-tools"
-version = "1.0.14"
+version = "1.0.16"
 description = "Common tools for all the repos at Dayhoff Labs"
 authors = [
     {name = "Daniel Martin-Alarcon", email = "dma@dayhofflabs.com"}
@@ -32,21 +32,11 @@ full = [
     "rdkit-pypi>=2022.9.5",
     "sqlalchemy (>=2.0.40,<3.0.0)",
     "transformers==4.36.2",
-    "torch==2.4.0+cu121",
-    "torchvision==0.19.0+cu121",
+    "torch>=2.1.0",
+    "torchvision>=0.16.0",
 ]
 
-# Specific configuration for PyTorch source
-[[tool.uv.index]]
-name = "torch-cuda"
-url = "https://download.pytorch.org/whl/cu121"
-explicit = true
-
-[tool.uv.sources]
-torch = { index = "torch-cuda" }
-torchvision = { index = "torch-cuda" }
-
-[dependency-groups] # Top-level table for groups
+[tool.uv.dependency-groups]
 common = [
     "black>=25.1.0,<26",
     "boto3>=1.36.8",