datamint 1.7.5__tar.gz → 1.7.6__tar.gz

{datamint-1.7.5 → datamint-1.7.6}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: datamint
-Version: 1.7.5
+Version: 1.7.6
 Summary: A library for interacting with the Datamint API, designed for efficient data management, processing and Deep Learning workflows.
 Requires-Python: >=3.10
 Classifier: Programming Language :: Python :: 3
@@ -19,7 +19,7 @@ Requires-Dist: humanize (>=4.0.0,<5.0.0)
 Requires-Dist: lazy-loader (>=0.3.0)
 Requires-Dist: lightning
 Requires-Dist: matplotlib
-Requires-Dist: medimgkit (>=0.2.1)
+Requires-Dist: medimgkit (>=0.2.2)
 Requires-Dist: nest-asyncio (>=1.0.0,<2.0.0)
 Requires-Dist: nibabel (>=4.0.0)
 Requires-Dist: numpy

{datamint-1.7.5 → datamint-1.7.6}/datamint/apihandler/annotation_api_handler.py

@@ -16,6 +16,7 @@ import json
 from deprecated import deprecated
 from pathlib import Path
 from tqdm.auto import tqdm
+from medimgkit.nifti_utils import DEFAULT_NIFTI_MIME
 
 _LOGGER = logging.getLogger(__name__)
 _USER_LOGGER = logging.getLogger('user_logger')
@@ -280,7 +281,7 @@ class AnnotationAPIHandler(BaseAPIHandler):
                 with open(file_path, 'rb') as f:
                     filename = os.path.basename(file_path)
                     form = aiohttp.FormData()
-                    form.add_field('file', f, filename=filename, content_type='application/x-nifti')
+                    form.add_field('file', f, filename=filename, content_type=DEFAULT_NIFTI_MIME)
                     if model_id is not None:
                         form.add_field('model_id', model_id)  # Add model_id if provided
                     if worklist_id is not None:

{datamint-1.7.5 → datamint-1.7.6}/datamint/apihandler/root_api_handler.py

@@ -7,9 +7,10 @@ import logging
 import asyncio
 import aiohttp
 from medimgkit.dicom_utils import anonymize_dicom, to_bytesio, is_dicom, is_dicom_report
-from medimgkit import dicom_utils
+from medimgkit import dicom_utils, standardize_mimetype
 from medimgkit.io_utils import is_io_object
 from medimgkit.format_detection import guess_typez, guess_extension, DEFAULT_MIME_TYPE
+from medimgkit.nifti_utils import DEFAULT_NIFTI_MIME, NIFTI_MIMES
 import pydicom
 from pathlib import Path
 from datetime import date
@@ -88,12 +89,17 @@ class RootAPIHandler(BaseAPIHandler):
         is_a_dicom_file = None
         if mimetype is None:
             mimetype_list, ext = guess_typez(file_path, use_magic=True)
-            mimetype = mimetype_list[-1]
-            if mimetype == 'application/gzip':
-                # Special case for gzipped NIfTI files
+            for mime in mimetype_list:
+                if mime in NIFTI_MIMES:
+                    mimetype = DEFAULT_NIFTI_MIME
+                    break
+            else:
                 if ext == '.nii.gz' or name.lower().endswith('nii.gz'):
-                    mimetype = 'image/x.nifti'
+                    mimetype = DEFAULT_NIFTI_MIME
+                else:
+                    mimetype = mimetype_list[-1] if mimetype_list else DEFAULT_MIME_TYPE
 
+        mimetype = standardize_mimetype(mimetype)
         filename = os.path.basename(name)
         _LOGGER.debug(f"File name '{filename}' mimetype: {mimetype}")
 

{datamint-1.7.5 → datamint-1.7.6}/pyproject.toml

@@ -1,7 +1,7 @@
 [project]
 name = "datamint"
 description = "A library for interacting with the Datamint API, designed for efficient data management, processing and Deep Learning workflows."
-version = "1.7.5"
+version = "1.7.6"
 dynamic = ["dependencies"]
 requires-python = ">=3.10"
 readme = "README.md"
@@ -40,7 +40,7 @@ matplotlib = "*"
 lightning = "*"
 albumentations = ">=2.0.0"
 lazy-loader = ">=0.3.0"
-medimgkit = ">=0.2.1"
+medimgkit = ">=0.2.2"
 # For compatibility with the datamintapi package
 datamintapi = "0.0.*"
 # Extra dependencies for docs