datajoint 2.1.1__tar.gz → 2.2.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (159) hide show
  1. {datajoint-2.1.1 → datajoint-2.2.0}/PKG-INFO +4 -4
  2. {datajoint-2.1.1 → datajoint-2.2.0}/README.md +3 -3
  3. {datajoint-2.1.1 → datajoint-2.2.0}/pixi.lock +880 -203
  4. {datajoint-2.1.1 → datajoint-2.2.0}/pyproject.toml +1 -0
  5. datajoint-2.2.0/src/datajoint/__init__.py +290 -0
  6. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/adapters/base.py +141 -1
  7. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/adapters/mysql.py +44 -3
  8. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/adapters/postgres.py +66 -0
  9. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/autopopulate.py +11 -10
  10. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/builtin_codecs/attach.py +4 -2
  11. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/builtin_codecs/filepath.py +19 -9
  12. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/builtin_codecs/hash.py +4 -2
  13. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/builtin_codecs/npy.py +5 -3
  14. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/builtin_codecs/object.py +5 -3
  15. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/builtin_codecs/schema.py +10 -3
  16. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/codecs.py +18 -3
  17. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/condition.py +7 -0
  18. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/connection.py +22 -22
  19. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/declare.py +16 -23
  20. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/dependencies.py +55 -87
  21. datajoint-2.2.0/src/datajoint/diagram.py +1402 -0
  22. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/errors.py +4 -0
  23. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/expression.py +20 -9
  24. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/gc.py +25 -13
  25. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/hash_registry.py +32 -12
  26. datajoint-2.2.0/src/datajoint/instance.py +311 -0
  27. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/jobs.py +15 -15
  28. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/lineage.py +6 -8
  29. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/migrate.py +5 -5
  30. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/objectref.py +2 -1
  31. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/preview.py +2 -2
  32. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/schemas.py +22 -106
  33. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/settings.py +2 -9
  34. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/staged_insert.py +2 -3
  35. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/storage.py +19 -6
  36. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/table.py +117 -168
  37. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/user_tables.py +4 -6
  38. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/utils.py +0 -40
  39. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/version.py +1 -1
  40. {datajoint-2.1.1 → datajoint-2.2.0}/tests/conftest.py +4 -4
  41. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_autopopulate.py +167 -0
  42. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_cascade_delete.py +104 -0
  43. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_cli.py +6 -3
  44. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_declare.py +10 -4
  45. datajoint-2.2.0/tests/integration/test_erd.py +158 -0
  46. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_gc.py +2 -2
  47. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_jobs.py +2 -3
  48. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_schema.py +2 -10
  49. datajoint-2.2.0/tests/integration/test_skip_duplicates.py +205 -0
  50. {datajoint-2.1.1 → datajoint-2.2.0}/tests/unit/test_codecs.py +2 -0
  51. {datajoint-2.1.1 → datajoint-2.2.0}/tests/unit/test_settings.py +12 -12
  52. datajoint-2.2.0/tests/unit/test_thread_safe.py +294 -0
  53. datajoint-2.1.1/src/datajoint/__init__.py +0 -114
  54. datajoint-2.1.1/src/datajoint/diagram.py +0 -1037
  55. datajoint-2.1.1/tests/integration/test_erd.py +0 -63
  56. {datajoint-2.1.1 → datajoint-2.2.0}/.coveragerc +0 -0
  57. {datajoint-2.1.1 → datajoint-2.2.0}/.devcontainer/Dockerfile +0 -0
  58. {datajoint-2.1.1 → datajoint-2.2.0}/.devcontainer/devcontainer.json +0 -0
  59. {datajoint-2.1.1 → datajoint-2.2.0}/.devcontainer/docker-compose.yml +0 -0
  60. {datajoint-2.1.1 → datajoint-2.2.0}/.dockerignore +0 -0
  61. {datajoint-2.1.1 → datajoint-2.2.0}/.gitattributes +0 -0
  62. {datajoint-2.1.1 → datajoint-2.2.0}/.github/DISCUSSION_TEMPLATE/rfc.yml +0 -0
  63. {datajoint-2.1.1 → datajoint-2.2.0}/.github/ISSUE_TEMPLATE/bug_report.md +0 -0
  64. {datajoint-2.1.1 → datajoint-2.2.0}/.github/ISSUE_TEMPLATE/feature_request.md +0 -0
  65. {datajoint-2.1.1 → datajoint-2.2.0}/.github/ISSUE_TEMPLATE/improvement_request.md +0 -0
  66. {datajoint-2.1.1 → datajoint-2.2.0}/.github/dependabot.yml +0 -0
  67. {datajoint-2.1.1 → datajoint-2.2.0}/.github/release_drafter.yaml +0 -0
  68. {datajoint-2.1.1 → datajoint-2.2.0}/.github/workflows/close_inactive_issues_prs.yaml +0 -0
  69. {datajoint-2.1.1 → datajoint-2.2.0}/.github/workflows/draft_release.yaml +0 -0
  70. {datajoint-2.1.1 → datajoint-2.2.0}/.github/workflows/lint.yaml +0 -0
  71. {datajoint-2.1.1 → datajoint-2.2.0}/.github/workflows/post_draft_release_published.yaml +0 -0
  72. {datajoint-2.1.1 → datajoint-2.2.0}/.github/workflows/test.yaml +0 -0
  73. {datajoint-2.1.1 → datajoint-2.2.0}/.gitignore +0 -0
  74. {datajoint-2.1.1 → datajoint-2.2.0}/.pre-commit-config.yaml +0 -0
  75. {datajoint-2.1.1 → datajoint-2.2.0}/.vscode/launch.json +0 -0
  76. {datajoint-2.1.1 → datajoint-2.2.0}/CHANGELOG-archive.md +0 -0
  77. {datajoint-2.1.1 → datajoint-2.2.0}/CONTRIBUTING.md +0 -0
  78. {datajoint-2.1.1 → datajoint-2.2.0}/Dockerfile +0 -0
  79. {datajoint-2.1.1 → datajoint-2.2.0}/LICENSE +0 -0
  80. {datajoint-2.1.1 → datajoint-2.2.0}/RELEASE_MEMO.md +0 -0
  81. {datajoint-2.1.1 → datajoint-2.2.0}/activate.sh +0 -0
  82. {datajoint-2.1.1 → datajoint-2.2.0}/docker-compose.yaml +0 -0
  83. {datajoint-2.1.1 → datajoint-2.2.0}/images/pipeline.drawio +0 -0
  84. {datajoint-2.1.1 → datajoint-2.2.0}/images/pipeline.png +0 -0
  85. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/adapters/__init__.py +0 -0
  86. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/blob.py +0 -0
  87. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/builtin_codecs/__init__.py +0 -0
  88. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/builtin_codecs/blob.py +0 -0
  89. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/cli.py +0 -0
  90. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/heading.py +0 -0
  91. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/logging.py +0 -0
  92. {datajoint-2.1.1 → datajoint-2.2.0}/src/datajoint/types.py +0 -0
  93. {datajoint-2.1.1 → datajoint-2.2.0}/tests/__init__.py +0 -0
  94. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/__init__.py +0 -0
  95. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/data/Course.csv +0 -0
  96. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/data/CurrentTerm.csv +0 -0
  97. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/data/Department.csv +0 -0
  98. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/data/Enroll.csv +0 -0
  99. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/data/Grade.csv +0 -0
  100. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/data/Section.csv +0 -0
  101. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/data/Student.csv +0 -0
  102. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/data/StudentMajor.csv +0 -0
  103. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/data/Term.csv +0 -0
  104. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_aggr_regressions.py +0 -0
  105. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_alter.py +0 -0
  106. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_attach.py +0 -0
  107. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_blob.py +0 -0
  108. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_blob_matlab.py +0 -0
  109. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_cascading_delete.py +0 -0
  110. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_codec_chaining.py +0 -0
  111. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_codecs.py +0 -0
  112. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_connection.py +0 -0
  113. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_dependencies.py +0 -0
  114. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_fetch.py +0 -0
  115. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_fetch_same.py +0 -0
  116. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_foreign_keys.py +0 -0
  117. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_groupby.py +0 -0
  118. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_hash_storage.py +0 -0
  119. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_hidden_job_metadata.py +0 -0
  120. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_insert.py +0 -0
  121. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_json.py +0 -0
  122. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_multi_backend.py +0 -0
  123. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_nan.py +0 -0
  124. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_npy_codec.py +0 -0
  125. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_object.py +0 -0
  126. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_privileges.py +0 -0
  127. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_reconnection.py +0 -0
  128. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_relation.py +0 -0
  129. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_relation_u.py +0 -0
  130. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_relational_operand.py +0 -0
  131. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_schema_keywords.py +0 -0
  132. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_semantic_matching.py +0 -0
  133. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_tls.py +0 -0
  134. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_type_aliases.py +0 -0
  135. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_university.py +0 -0
  136. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_update1.py +0 -0
  137. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_utils.py +0 -0
  138. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_uuid.py +0 -0
  139. {datajoint-2.1.1 → datajoint-2.2.0}/tests/integration/test_virtual_module.py +0 -0
  140. {datajoint-2.1.1 → datajoint-2.2.0}/tests/schema.py +0 -0
  141. {datajoint-2.1.1 → datajoint-2.2.0}/tests/schema_advanced.py +0 -0
  142. {datajoint-2.1.1 → datajoint-2.2.0}/tests/schema_aggr_regress.py +0 -0
  143. {datajoint-2.1.1 → datajoint-2.2.0}/tests/schema_alter.py +0 -0
  144. {datajoint-2.1.1 → datajoint-2.2.0}/tests/schema_codecs.py +0 -0
  145. {datajoint-2.1.1 → datajoint-2.2.0}/tests/schema_external.py +0 -0
  146. {datajoint-2.1.1 → datajoint-2.2.0}/tests/schema_object.py +0 -0
  147. {datajoint-2.1.1 → datajoint-2.2.0}/tests/schema_privileges.py +0 -0
  148. {datajoint-2.1.1 → datajoint-2.2.0}/tests/schema_simple.py +0 -0
  149. {datajoint-2.1.1 → datajoint-2.2.0}/tests/schema_type_aliases.py +0 -0
  150. {datajoint-2.1.1 → datajoint-2.2.0}/tests/schema_university.py +0 -0
  151. {datajoint-2.1.1 → datajoint-2.2.0}/tests/schema_uuid.py +0 -0
  152. {datajoint-2.1.1 → datajoint-2.2.0}/tests/test_package.py +0 -0
  153. {datajoint-2.1.1 → datajoint-2.2.0}/tests/unit/__init__.py +0 -0
  154. {datajoint-2.1.1 → datajoint-2.2.0}/tests/unit/test_adapters.py +0 -0
  155. {datajoint-2.1.1 → datajoint-2.2.0}/tests/unit/test_condition.py +0 -0
  156. {datajoint-2.1.1 → datajoint-2.2.0}/tests/unit/test_fetch_compat.py +0 -0
  157. {datajoint-2.1.1 → datajoint-2.2.0}/tests/unit/test_lazy_imports.py +0 -0
  158. {datajoint-2.1.1 → datajoint-2.2.0}/tests/unit/test_pk_rules.py +0 -0
  159. {datajoint-2.1.1 → datajoint-2.2.0}/tests/unit/test_storage_urls.py +0 -0
{datajoint-2.1.1 → datajoint-2.2.0}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: datajoint
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- Version: 2.1.1
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+ Version: 2.2.0
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  Summary: DataJoint for Python is a framework for scientific workflow management based on relational principles. DataJoint is built on the foundation of the relational data model and prescribes a consistent method for organizing, populating, computing, and querying data.
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  Project-URL: Homepage, https://docs.datajoint.com/
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  Project-URL: Documentation, https://docs.datajoint.com/
@@ -303,8 +303,8 @@ DataJoint is a framework for scientific data pipelines based on the **Relational
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  </td>
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  <td>Citation</td>
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  <td>
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- <a href="https://doi.org/10.1101/031658">
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- <img src="https://img.shields.io/badge/DOI-10.1101/031658-blue.svg" alt="DOI" />
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+ <a href="https://doi.org/10.48550/arXiv.2602.16585">
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+ <img src="https://img.shields.io/badge/DOI-10.48550/arXiv.2602.16585-blue.svg" alt="DOI" />
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  </a>
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  </td>
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  <td>Coverage</td>
@@ -341,7 +341,7 @@ conda install -c conda-forge datajoint
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  - [How-To Guides](https://docs.datajoint.com/how-to/) — Task-oriented guides
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  - [API Reference](https://docs.datajoint.com/api/) — Complete API documentation
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  - [Migration Guide](https://docs.datajoint.com/how-to/migrate-to-v20/) — Upgrade from legacy versions
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- - **[DataJoint Elements](https://datajoint.com/docs/elements/)** — Example pipelines for neuroscience
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+ - **[DataJoint Elements](https://docs.datajoint.com/elements/)** — Example pipelines for neuroscience
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  - **[GitHub Discussions](https://github.com/datajoint/datajoint-python/discussions)** — Community support
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  ## Contributing
{datajoint-2.1.1 → datajoint-2.2.0}/README.md RENAMED
@@ -42,8 +42,8 @@ DataJoint is a framework for scientific data pipelines based on the **Relational
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  </td>
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  <td>Citation</td>
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  <td>
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- <a href="https://doi.org/10.1101/031658">
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- <img src="https://img.shields.io/badge/DOI-10.1101/031658-blue.svg" alt="DOI" />
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+ <a href="https://doi.org/10.48550/arXiv.2602.16585">
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+ <img src="https://img.shields.io/badge/DOI-10.48550/arXiv.2602.16585-blue.svg" alt="DOI" />
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  </a>
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  </td>
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  <td>Coverage</td>
@@ -80,7 +80,7 @@ conda install -c conda-forge datajoint
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  - [How-To Guides](https://docs.datajoint.com/how-to/) — Task-oriented guides
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  - [API Reference](https://docs.datajoint.com/api/) — Complete API documentation
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  - [Migration Guide](https://docs.datajoint.com/how-to/migrate-to-v20/) — Upgrade from legacy versions
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- - **[DataJoint Elements](https://datajoint.com/docs/elements/)** — Example pipelines for neuroscience
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+ - **[DataJoint Elements](https://docs.datajoint.com/elements/)** — Example pipelines for neuroscience
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  - **[GitHub Discussions](https://github.com/datajoint/datajoint-python/discussions)** — Community support
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  ## Contributing