datacube-alchemist 0.6.7__tar.gz

datacube-alchemist-0.6.7/.github/.codecov.yml

@@ -0,0 +1,29 @@
+codecov:
+  require_ci_to_pass: yes
+
+coverage:
+  status:
+    project:
+      default: # This can be anything, but it needs to exist as the name
+        # basic settings
+        target: auto
+        threshold: 40%
+  precision: 2
+  round: down
+  range: "20...100"
+
+parsers:
+  gcov:
+    branch_detection:
+      conditional: yes
+      loop: yes
+      method: no
+      macro: no
+
+fixes:
+  - "/code::"
+
+comment:
+  layout: "reach,diff,flags,tree"
+  behavior: default
+  require_changes: no

datacube-alchemist-0.6.7/.github/dependabot.yml

@@ -0,0 +1,18 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://help.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+
+version: 2
+updates:
+  - package-ecosystem: "pip" # See documentation for possible values
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "daily"
+      
+  - package-ecosystem: "github-actions"
+    # Workflow files stored in the
+    # default location of `.github/workflows`
+    directory: "/"
+    schedule:
+      interval: "daily"

datacube-alchemist-0.6.7/.github/workflows/publish-pypi.yml

@@ -0,0 +1,30 @@
+name: Publish to PyPI
+
+on:
+  release:
+    types: [published]
+
+jobs:
+  publish_pypi:
+    if: github.repository == 'opendatacube/datacube-alchemist'
+
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - name: Setup Python
+        uses: actions/setup-python@v1
+        with:
+          python-version: 3.8
+
+      - name: Install Twine
+        run: |
+          python -m pip install --upgrade twine
+          python -m pip freeze
+
+      - name: Upload to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          password: ${{ secrets.PYPI_TOKEN }}
+          skip_existing: true

datacube-alchemist-0.6.7/.github/workflows/scan.yml

@@ -0,0 +1,54 @@
+---
+name: Scan
+
+on:
+  schedule:
+    - cron: '0 0 * * *'
+env:
+  IMAGE_NAME: opendatacube/datacube-alchemist
+
+jobs:
+  cve-scanner:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout git
+        uses: actions/checkout@v3
+        with:
+          fetch-depth: 0
+
+      - name: Get unstable git tag
+        run: >
+          echo "UNSTABLE_TAG=$(git describe --tags)" >> $GITHUB_ENV
+
+      - name: Log the unstable tag
+        run: echo $UNSTABLE_TAG
+
+      - name: Build unstable + latest Docker image tag
+        if: github.event_name != 'release'
+        uses: whoan/docker-build-with-cache-action@v5.11.1
+        with:
+          image_name: ${{ env.IMAGE_NAME }}
+          image_tag: ${{ env.UNSTABLE_TAG }},latest
+          build_extra_args: "--build-arg=ENVIRONMENT=deployment"
+          push_image_and_stages: false
+
+      - name: Run vulnerability scanner
+        if: github.event_name != 'release'
+        uses: aquasecurity/trivy-action@0.7.1
+        with:
+          image-ref: "${{ env.IMAGE_NAME }}:${{ env.UNSTABLE_TAG }}"
+          format: "table"
+          exit-code: "1"
+          severity: "CRITICAL,HIGH"
+
+      - name: Notify Slack for Failures
+        uses: rtCamp/action-slack-notify@v2.2.0
+        if: failure()
+        env:
+          SLACK_CHANNEL: ga-wms-ops
+          SLACK_ICON: "https://github.com/docker.png?size=48"
+          SLACK_COLOR: "#482de1"
+          SLACK_MESSAGE: ""
+          SLACK_TITLE: CVE Scan alert
+          SLACK_USERNAME: Alchemist Scanner
+          SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}

datacube-alchemist-0.6.7/.github/workflows/test-and-push.yml

@@ -0,0 +1,132 @@
+name: Test and Push
+
+on:
+  push:
+    branches:
+      - main
+    paths:
+      - 'datacube_alchemist/**'
+      - 'tests/**'
+      - '.github/workflows/push-and-test.yml'
+      - 'Dockerfile'
+      - 'requirements.txt'
+      - 'constraints.txt'
+      - 'setup.py'
+
+  pull_request:
+    branches:
+      - main
+    paths:
+      - 'datacube_alchemist/**'
+      - 'tests/**'
+      - '.github/workflows/push-and-test.yml'
+      - 'Dockerfile'
+      - 'requirements.txt'
+      - 'constraints.txt'
+      - 'setup.py'
+
+  release:
+    types: [created, edited]
+
+env:
+  IMAGE_NAME: opendatacube/datacube-alchemist
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v3
+      with:
+        fetch-depth: 0
+
+    - uses: rickstaa/action-black@v1
+      with:
+        black_args: "--check datacube_alchemist"
+
+    - name: Build the docker container
+      run: |
+        docker-compose build
+
+    - name: Bring up the docker container
+      run: |
+        docker-compose up -d
+        sleep 5
+        docker-compose exec -T alchemist datacube system init
+
+    - name: Run tests
+      run: |
+        docker-compose exec -T alchemist pytest --cov=./datacube_alchemist --cov-report=xml tests/
+
+    - name: Upload coverage to Codecov
+      uses: codecov/codecov-action@v3
+      with:
+        fail_ci_if_error: false
+
+    - name: Integration tests
+      run: |
+        docker-compose exec -T alchemist bash ./tests/integration_tests.sh
+
+  push:
+    if: github.ref == 'refs/heads/main' || github.event_name == 'release'
+    needs: test
+
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v3
+      with:
+        fetch-depth: 0
+
+    # Build and Push for main branch
+    # Docker
+    - name: Get git commit hash for push to main
+      if: github.event_name != 'release'
+      run: |
+        git fetch --all --tags
+        echo "GITHASH=$(git describe --tags)" >> $GITHUB_ENV
+
+    - name: Build and Push unstable Docker Image for push to main
+      uses: whoan/docker-build-with-cache-action@v5.11.1
+      if: github.event_name != 'release'
+      with:
+        image_name: ${{ env.IMAGE_NAME }}
+        username: ${{ secrets.DOCKER_USER }}
+        password: ${{ secrets.DOCKER_PASS }}
+        image_tag: latest,${{ env.GITHASH }}
+
+    # Build and Push for release
+    # Python
+    - name: Build the package
+      if: github.event_name == 'release'
+      run: |
+        pip install build
+        python -m build
+
+    - name: Deploy packages to DEA Packages
+      if: github.event_name == 'release'
+      uses: jakejarvis/s3-sync-action@master
+      with:
+        args: --acl public-read --follow-symlinks
+      env:
+        AWS_S3_BUCKET: "datacube-core-deployment"
+        AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
+        AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
+        AWS_REGION: "ap-southeast-2"  # optional: defaults to us-east-1
+        SOURCE_DIR: "dist"  # optional: defaults to entire repository
+        DEST_DIR: "datacube-alchemist"
+
+    # Docker
+    - name: Get tag for this build if it exists
+      if: github.event_name == 'release'
+      run: |
+        echo "RELEASE=${GITHUB_REF/refs\/tags\/}" >> $GITHUB_ENV
+
+    - name: Build and Push semver tagged Docker Image for Release
+      uses: whoan/docker-build-with-cache-action@v5.11.1
+      if: github.event_name == 'release'
+      with:
+        image_name: ${{ env.IMAGE_NAME }}
+        username: ${{ secrets.DOCKER_USER }}
+        password: ${{ secrets.DOCKER_PASS }}
+        image_tag: ${{ env.RELEASE }}

datacube-alchemist-0.6.7/.gitignore

@@ -0,0 +1,117 @@
+# Byte-compiled / optimized / DLL files
+.DS_Store
+__pycache__/
+*.py[cod]
+*$py.class
+dask-worker-space/
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# pyenv
+.python-version
+
+# celery beat schedule file
+celerybeat-schedule
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+
+
+.idea
+
+# Othis stuff
+.vscode/
+datacube-index/
+output
+
+# Let setuptools_scm manage the _version.py file
+datacube_alchemist/_version.py

datacube-alchemist-0.6.7/.pre-commit-config.yaml

@@ -0,0 +1,30 @@
+repos:
+    - repo: https://github.com/adrienverge/yamllint.git
+      rev: v1.25.0
+      hooks:
+        - id: yamllint
+    - repo: https://github.com/pre-commit/pre-commit-hooks
+      rev: v3.2.0
+      hooks:
+        - id: end-of-file-fixer
+        - id: check-docstring-first
+        - id: check-json
+        - id: check-yaml
+        - id: debug-statements
+        - id: name-tests-test
+          args: ['--django']
+        - id: requirements-txt-fixer
+        - id: check-added-large-files
+        - id: check-merge-conflict
+    - repo: https://github.com/pre-commit/mirrors-pylint
+      rev: 'v2.6.0'  # Use the sha / tag you want to point at
+      hooks:
+      - id: pylint
+    - repo: https://gitlab.com/pycqa/flake8
+      rev: '3.8.4'
+      hooks:
+        - id: flake8
+    - repo: https://github.com/psf/black
+      rev: 20.8b1
+      hooks:
+      - id: black

datacube-alchemist-0.6.7/.yamllint

@@ -0,0 +1,22 @@
+extends: default
+
+rules:
+    # We could enable these if we find a decent yaml autoformatter.
+    # (yamlfmt in pip is too buggy at the moment for our files)
+    #
+    # The effort of fixing them by hand, especially auto-generated yamls, is not
+    # currently worth it.
+
+    # Many tools (eg. generated secure keys) don't output wrapped lines.
+    line-length: disable
+
+    # The existing documents will need to be cleaned up first
+    indentation: disable
+
+    # Pedantry & existing docs don't have it.
+    document-start: disable
+
+    # Warning that truthy values are not quoted.
+    # All documents currently use "True" without quotes, so this would be a
+    # larger change across almost every doc.
+    truthy: disable

datacube-alchemist-0.6.7/Dockerfile

@@ -0,0 +1,57 @@
+FROM osgeo/gdal:ubuntu-small-3.4.1
+
+ENV DEBIAN_FRONTEND=noninteractive \
+    LC_ALL=C.UTF-8 \
+    LANG=C.UTF-8
+
+# Apt installation
+RUN apt-get update && \
+    apt-get install -y \
+      build-essential \
+      fish \
+      git \
+      vim \
+      nano \
+      wget \
+      python3-pip \
+      # For FC
+      libgfortran5 \
+      # For Psycopg2
+      libpq-dev python-dev \
+    && apt-get autoclean && \
+    apt-get autoremove && \
+    rm -rf /var/lib/{apt,dpkg,cache,log}
+
+# Environment can be whatever is supported by setup.py
+# so, either deployment, test
+ARG ENVIRONMENT=deployment
+RUN echo "Environment is: $ENVIRONMENT"
+
+# Pip installation
+RUN mkdir -p /conf
+COPY requirements.txt /conf/
+RUN pip install -r /conf/requirements.txt
+
+# Set up a nice workdir and add the live code
+ENV APPDIR=/code
+RUN mkdir -p $APPDIR
+WORKDIR $APPDIR
+ADD . $APPDIR
+
+# These ENVIRONMENT flags make this a bit complex, but basically, if we are in dev
+# then we want to link the source (with the -e flag) and if we're in prod, we
+# want to delete the stuff in the /code folder to keep it simple.
+# no-use-pep517 because of this https://github.com/pypa/pip/issues/7953
+RUN if [ "$ENVIRONMENT" = "deployment" ] ; then\
+        pip install . ; \
+        rm -rf $APPDIR/* ; \
+    else \
+        pip install --no-use-pep517 --editable ".[$ENVIRONMENT]" ; \
+    fi
+
+RUN pip freeze
+
+# Check it works
+RUN datacube-alchemist --version
+
+CMD ["datacube-alchemist", "--help"]

datacube-alchemist-0.6.7/LICENSE

@@ -0,0 +1,201 @@
+                                 Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
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