datacron 2026.718.2__tar.gz

datacron-2026.718.2/.gitignore

@@ -0,0 +1,73 @@
+# Python
+__pycache__/
+*.py[cod]
+*$py.class
+*.egg-info/
+*.egg
+build/
+dist/
+dist-installer/
+.pytest_cache/
+.mypy_cache/
+.ruff_cache/
+.coverage
+htmlcov/
+.tox/
+.nox/
+.hypothesis/
+.venv/
+venv/
+env/
+
+# Datacron runtime
+.datacron/
+*.db
+*.db-wal
+*.db-shm
+
+# Local-only directory (project convention): agent briefs, audits, studies,
+# reviews, session reports, private eval data. Never committed.
+local/
+
+# Safety net: legacy locations of local-only artifacts
+docs/audits/
+docs/etudes/
+
+# OS
+.DS_Store
+Thumbs.db
+desktop.ini
+
+# IDE
+.idea/
+.vscode/
+*.swp
+*.swo
+
+# Logs
+logs/
+*.log
+
+# Secrets
+.env
+.env.local
+.env.*.local
+
+# Local agent session config
+.claude/
+
+# AI / agent working artifacts -- kept local, never committed
+CLAUDE.md
+docs/agent-briefs/
+docs/reviews/
+docs/ChatGPT_*.md
+docs/Gemini_*.md
+docs/brief-*.md
+docs/fix-plan*.md
+docs/doc-sync*.md
+
+# Local reliability reviews and experiments
+datacron-redteam-data-integrity.md
+lot*_design_review.md
+lot*_report.md
+experiments/

datacron-2026.718.2/LICENSE

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datacron-2026.718.2/PKG-INFO

@@ -0,0 +1,363 @@
+Metadata-Version: 2.4
+Name: datacron
+Version: 2026.718.2
+Summary: Local-first MCP server that exposes a Markdown vault through MCP.
+Project-URL: Homepage, https://github.com/VBlackJack/Datacron
+Project-URL: Documentation, https://github.com/VBlackJack/Datacron/blob/main/README.md
+Project-URL: Source, https://github.com/VBlackJack/Datacron
+Project-URL: Issues, https://github.com/VBlackJack/Datacron/issues
+Author: Julien Bombled
+License-Expression: Apache-2.0
+License-File: LICENSE
+Keywords: claude,local-first,markdown,mcp,obsidian,vault
+Classifier: Development Status :: 3 - Alpha
+Classifier: Environment :: Console
+Classifier: Intended Audience :: Developers
+Classifier: License :: OSI Approved :: Apache Software License
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Topic :: Software Development :: Libraries :: Python Modules
+Classifier: Topic :: Text Processing :: Markup :: Markdown
+Classifier: Typing :: Typed
+Requires-Python: >=3.11
+Requires-Dist: aiosqlite>=0.20
+Requires-Dist: mcp>=1.2
+Requires-Dist: mistletoe>=1.3
+Requires-Dist: pydantic-settings>=2.2
+Requires-Dist: pydantic>=2.6
+Requires-Dist: python-frontmatter>=1.1
+Requires-Dist: python-ulid>=2.4
+Requires-Dist: pyyaml>=6.0
+Requires-Dist: rich>=13.7
+Requires-Dist: tomli-w>=1.0
+Requires-Dist: truststore>=0.10.4
+Requires-Dist: typer>=0.12
+Provides-Extra: build
+Requires-Dist: pyinstaller>=6.0; extra == 'build'
+Provides-Extra: dev
+Requires-Dist: hypothesis>=6.112; extra == 'dev'
+Requires-Dist: mypy>=1.11; extra == 'dev'
+Requires-Dist: pytest-asyncio>=0.24; extra == 'dev'
+Requires-Dist: pytest-cov>=5.0; extra == 'dev'
+Requires-Dist: pytest>=9.0.3; extra == 'dev'
+Requires-Dist: ruff>=0.13.2; extra == 'dev'
+Requires-Dist: types-pyyaml>=6.0; extra == 'dev'
+Description-Content-Type: text/markdown
+
+# Datacron
+
+> Local MCP server to query and maintain a Markdown vault from Claude Desktop or Claude Code,
+> without sending the whole vault into the context.
+
+<!-- mcp-name: io.github.vblackjack/datacron -->
+
+[![License: Apache 2.0](https://img.shields.io/badge/License-Apache_2.0-blue.svg)](LICENSE)
+[![Python: 3.11+](https://img.shields.io/badge/Python-3.11%2B-blue)](pyproject.toml)
+[![MCP: local stdio](https://img.shields.io/badge/MCP-local_stdio-purple)](#mcp-tools)
+[![CI](https://github.com/VBlackJack/datacron/actions/workflows/ci.yml/badge.svg)](https://github.com/VBlackJack/datacron/actions/workflows/ci.yml)
+
+[Français](README.md) | **English**
+
+Datacron indexes a folder of Markdown notes, exposes a local MCP server, then returns the
+relevant notes or chunks to the client instead of a full dump. The vault stays an ordinary
+Markdown folder: Datacron only adds a `.datacron/` sidecar for the index, logs, internal
+ULIDs, history, and the operation journal.
+
+## What is in place
+
+| Surface | Current state |
+|---|---|
+| Vault reading | `list_notes`, `get_note`, resources `datacron://vault/map`, `vault/info`, `policy/active` |
+| Search | SQLite FTS5/BM25, FR↔EN query expansion, temporal re-rank, `ripgrep` via `search_regex` |
+| Local graph | Wikilinks and backlinks via `get_backlinks` |
+| Writing | 5 confined, reversible tools, disabled by default without `DATACRON_WRITE_PATHS` |
+| Index | `datacron index` incremental, `datacron reindex` full, automatic repair on read |
+| Evaluation | `datacron eval` over the real MCP pipeline: recall@k, MRR, nDCG, freshness, latency, and payload tokens |
+| Guided setup | `datacron setup`: init + index + MCP registration in one command |
+| Clients | Auto-detect and register via `datacron setup --client all`: Claude Desktop, Claude Code, Cursor, Gemini CLI, Codex CLI, Windsurf, VS Code |
+| Distribution | Windows installer (`Datacron-Setup.exe`), standalone executable (PyInstaller) with no Python required, or installation from source |
+
+Local measurement of the `tool/impl` pipeline actually received by the agent, 19 questions,
+8k-token / 20-result configuration, July 17, 2026:
+
+```text
+recall@5       0.89
+recall@10      0.95
+recall@20      0.95
+MRR            0.73
+nDCG@10        0.79
+latency p50    57 ms
+latency p95    276 ms
+payload tokens 90567
+```
+
+The tool now matches the raw store at recall@5 (0.89): the previous gap came from globally
+comparing scores produced by separate AND and OR queries, not from the response budget or a
+BM25 limitation. Repair-on-read throttling brings its own p50 down to 0.009 ms; the first
+full sweep of the session remains visible in p95. The golden set does not yet contain a
+`forbidden_paths` case and the vault has no indexed `supersedes` relationship.
+
+## Installation
+
+### Windows: one double-click installer
+
+The easiest way on Windows: download `Datacron-Setup.exe` from the
+[latest Release](https://github.com/VBlackJack/datacron/releases/latest), double-click it,
+and pick your vault. No Python, no terminal, no administrator rights; Datacron registers
+itself with your AI clients automatically. Full guide:
+[Windows installation](docs/en/installation-windows.md).
+
+### From source
+
+From a clone of the repository:
+
+```bash
+python -m pip install -e ".[dev]"
+```
+
+Or, to install only the application:
+
+```bash
+python -m pip install -e .
+```
+
+Runtime prerequisites:
+
+- Python 3.11+
+- `ripgrep` available on the `PATH` for `search_regex`
+- a folder of Markdown notes
+- Claude Desktop or another stdio MCP client
+
+## Quick start
+
+The easy path - one command detects your AI clients, initializes the vault, indexes it, and
+registers Datacron everywhere:
+
+```bash
+datacron setup            # interactive; add --yes for all defaults
+```
+
+See the [installation guide](docs/en/setup.md) for options (`--client`, `--scope`, writing,
+durability). Or step by step:
+
+```bash
+datacron init /path/to/vault
+datacron index --vault /path/to/vault
+datacron status --vault /path/to/vault
+datacron mcp install --client claude-desktop --vault /path/to/vault
+```
+
+Restart the client (e.g. Claude Desktop) after installation.
+
+To run the server manually:
+
+```bash
+datacron mcp serve --vault /path/to/vault
+```
+
+The direct script entry used by the installer is also available:
+
+```bash
+datacron-mcp
+```
+
+`datacron-mcp` reads the vault from `DATACRON_VAULT_ROOT`.
+
+## Configuration
+
+`datacron init` creates `.datacron/VAULT.yaml`. That file can carry vault-local
+configuration, notably query expansion:
+
+```yaml
+query_expansion:
+  supervision: [monitoring]
+  sauvegarde: [backup]
+  restauration: [restore]
+  chiffrement: [encryption]
+  sécurité: [security]
+  validité: [validity]
+  certificat: [certificate]
+```
+
+Useful environment variables:
+
+| Variable | Default | Role |
+|---|---:|---|
+| `DATACRON_VAULT_ROOT` | current directory or `--vault` | vault served by the server |
+| `DATACRON_READ_PATHS` | empty | read allowlist; the Claude Desktop installer sets it to the vault |
+| `DATACRON_WRITE_PATHS` | empty | write allowlist; empty = write tools disabled |
+| `DATACRON_MAX_RESULT_COUNT` | `20` | maximum number of results returned |
+| `DATACRON_MAX_RESULT_TOKENS` | `8000` | token budget for search results |
+| `DATACRON_REPAIR_MIN_INTERVAL_SECONDS` | `30` | minimum interval between repair-on-read sweeps; `0` = every read |
+| `DATACRON_GET_NOTE_MAX_TOKENS` | `25000` | budget for `get_note(format="full")` |
+| `DATACRON_CHUNK_MAX_TOKENS` | `1024` | target maximum chunk size |
+| `DATACRON_RIPGREP_PATH` | `rg` | ripgrep binary |
+
+Path lists use the OS separator (`:` on Unix, `;` on Windows).
+
+## Writing
+
+Writes are deliberately OFF by default. Without `DATACRON_WRITE_PATHS`, write tools return a
+clear error and create no file.
+
+To enable writing to a specific subfolder:
+
+```powershell
+$env:DATACRON_VAULT_ROOT = "G:\_DATA"
+$env:DATACRON_READ_PATHS = "G:\_DATA"
+$env:DATACRON_WRITE_PATHS = "G:\_DATA\_memory"
+datacron mcp serve --vault G:\_DATA
+```
+
+Available write tools:
+
+- `create_note_ai`: creates a typed Markdown note, without overwrite.
+- `append_journal`: adds an entry under a heading of an existing note.
+- `set_frontmatter`: updates lifecycle fields without modifying the Markdown body.
+- `patch_note_section`: replaces the content under an existing heading with CAS control.
+- `revert_note`: restores the exact bytes of a version kept in history.
+
+Guarantees:
+
+- strict confinement within `DATACRON_WRITE_PATHS`
+- atomic overwrite via temporary file + `os.replace`
+- content-addressed history before modifying an existing note
+- `reconcile()` after write to make the note immediately searchable
+- local audit log
+
+Concurrent multi-machine mode is not supported for writes: keep a single-writer rule on the
+vault.
+
+## MCP Tools
+
+### Reading
+
+| Tool | Description |
+|---|---|
+| `list_notes` | returns a paginated list, filterable by folder and tags, with ULID, title, tags, aliases, and dates |
+| `get_note` | reads a note by ULID, chunk id, or relative path, as paginated content, chunk, or heading outline |
+| `search_text` | runs a BM25 search on the FTS5 index with ranked snippets and stale notes demoted by default |
+| `search_regex` | runs a regex search via ripgrep and resolves the found lines to indexed chunks |
+| `get_backlinks` | returns chunks whose wikilinks target a ULID or a resolved alias |
+
+### Writing
+
+| Tool | Description |
+|---|---|
+| `create_note_ai` | creates a new typed `_memory` note, confined to allowed paths, without overwrite and with a durable journal |
+| `append_journal` | adds a Markdown entry under a heading, with confinement, exact history, and atomic write |
+| `set_frontmatter` | updates only the lifecycle fields and the `updated` date, preserving the Markdown body |
+| `patch_note_section` | replaces the content of an existing heading with CAS, exact history, and preservation of other sections |
+| `revert_note` | restores a note from its content-addressed history; the operation stays durable, reversible, and audited |
+
+### Operational
+
+| Tool | Description |
+|---|---|
+| `get_health` | returns the real state of index freshness, integrity, checksum, durability, and invariants |
+| `get_note_history` | lists the committed operation metadata of a note without reading historical content or modifying the journal |
+| `audit_query` | queries operation metadata by period, tool, or note without modifying the journal or the vault |
+
+### Advisory (experimental)
+
+| Tool | Description |
+|---|---|
+| `contradiction_scan` | live, deterministic, bounded scan of contradictions/refinements between sections; proposes and confirms an explicit CAS call read-only, without ever writing automatically |
+
+MCP resources:
+
+- `datacron://vault/map`
+- `datacron://vault/info`
+- `datacron://policy/active`
+
+## Search
+
+`search_text` combines several signals:
+
+- FTS5/BM25 for the base lexical score
+- FR↔EN query expansion configured in `VAULT.yaml`
+- conservative temporal re-rank:
+  - a note referenced in another note's `supersedes` is strongly demoted
+  - `confidence: low` and `confidence: needs_verification` apply a light penalty
+  - `include_superseded=true` brings historical notes back up
+
+`search_regex` stays literal: it applies neither query expansion nor temporal re-rank.
+
+## Privacy and security
+
+- Datacron does no telemetry.
+- Datacron calls no cloud LLM.
+- The MCP client, for example Claude Desktop, may send the chunks that Datacron returns to
+  its provider. Datacron does not send it the full vault.
+- Content returned to clients is wrapped in `<vault_content>...</vault_content>`.
+- Results are bounded by count and by token budget.
+- Filesystem access is confined by `DATACRON_READ_PATHS` and `DATACRON_WRITE_PATHS`.
+- MCP operations are audited in the local logs.
+
+## CLI commands
+
+```bash
+datacron setup                      # guided path: init + index + client config
+datacron setup --yes                # all defaults, no prompts
+datacron init /path/to/vault
+datacron status --vault /path/to/vault
+datacron index --vault /path/to/vault
+datacron reindex --vault /path/to/vault
+datacron scrub-init --vault /path/to/vault
+datacron scrub --vault /path/to/vault
+datacron eval --questions examples/eval-questions.example.yaml --vault /path/to/vault
+datacron eval --questions local/golden.yaml --vault /path/to/vault --save-baseline
+datacron eval --questions local/golden.yaml --vault /path/to/vault --compare --json
+datacron mcp serve --vault /path/to/vault
+datacron mcp install --client claude-desktop --vault /path/to/vault
+```
+
+## Current limitations
+
+- No vector search / embeddings: the spike is ruled out on the current golden because
+  tool-level recall@5 at 0.89 matches the BM25 store. Re-evaluate if an expanded golden
+  falls below 0.85 with the same evaluation.
+- No autonomous agent: the MCP client orchestrates.
+- No GUI.
+- No concurrent multi-machine writes.
+- Client detection in `datacron setup` is best-effort (a config directory or a binary on the
+  `PATH`); an install in a non-standard location may be missed and can then be configured by
+  hand.
+
+## Documentation
+
+Full index: [docs/en/index.md](docs/en/index.md) | [Index français](docs/fr/index.md).
+
+To get started:
+
+- [Installation and configuration guide](docs/en/setup.md)
+- [User guide](docs/en/user-guide.md)
+
+Technical references:
+
+- [Vault conventions (SPEC)](docs/en/spec.md)
+- [Architecture and public surface](docs/en/architecture.md)
+- [Settled decisions v2.1](docs/en/decisions-v2.1.md)
+- [Security boundary](docs/en/security-boundary.md)
+- [Integrity scrubber](docs/en/integrity-scrubber.md)
+- [Operational health and durability](docs/en/operational-health.md)
+- [Freshness contract](docs/en/freshness-contract-v1.md)
+
+## Development
+
+```bash
+python -m pip install -e ".[dev]"
+ruff check .
+ruff format --check .
+mypy
+pytest
+```
+
+## License
+
+Copyright 2026 Julien Bombled.
+
+Licensed under the [Apache License, Version 2.0](LICENSE).