data-manipulation-utilities 0.2.8.dev720__tar.gz → 0.2.8.dev730__tar.gz

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Files changed (81) hide show
  1. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/PKG-INFO +2 -1
  2. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/README.md +1 -0
  3. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/pyproject.toml +20 -7
  4. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/plotting/plotter.py +23 -11
  5. data_manipulation_utilities-0.2.8.dev730/src/dmu_data/__init__.py +0 -0
  6. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/__init__.py +0 -0
  7. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/arrays/utilities.py +0 -0
  8. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/generic/hashing.py +0 -0
  9. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/generic/utilities.py +0 -0
  10. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/generic/version_management.py +0 -0
  11. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/logging/log_store.py +0 -0
  12. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/logging/messages.py +0 -0
  13. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/ml/cv_classifier.py +0 -0
  14. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/ml/cv_diagnostics.py +0 -0
  15. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/ml/cv_performance.py +0 -0
  16. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/ml/cv_predict.py +0 -0
  17. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/ml/train_mva.py +0 -0
  18. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/ml/utilities.py +0 -0
  19. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/pdataframe/utilities.py +0 -0
  20. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/plotting/fwhm.py +0 -0
  21. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/plotting/matrix.py +0 -0
  22. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/plotting/plotter_1d.py +0 -0
  23. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/plotting/plotter_2d.py +0 -0
  24. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/plotting/utilities.py +0 -0
  25. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/rdataframe/atr_mgr.py +0 -0
  26. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/rdataframe/utilities.py +0 -0
  27. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/rfile/ddfgetter.py +0 -0
  28. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/rfile/rfprinter.py +0 -0
  29. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/rfile/utilities.py +0 -0
  30. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/stats/fit_stats.py +0 -0
  31. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/stats/fitter.py +0 -0
  32. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/stats/function.py +0 -0
  33. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/stats/gof_calculator.py +0 -0
  34. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/stats/minimizers.py +0 -0
  35. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/stats/model_factory.py +0 -0
  36. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/stats/parameters.py +0 -0
  37. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/stats/utilities.py +0 -0
  38. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/stats/wdata.py +0 -0
  39. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/stats/zfit.py +0 -0
  40. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/stats/zfit_models.py +0 -0
  41. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/stats/zfit_plotter.py +0 -0
  42. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/testing/utilities.py +0 -0
  43. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/text/transformer.py +0 -0
  44. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/workflow/__init__.py +0 -0
  45. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu/workflow/cache.py +0 -0
  46. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/ml/tests/diagnostics_from_file.yaml +0 -0
  47. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/ml/tests/diagnostics_from_model.yaml +0 -0
  48. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/ml/tests/diagnostics_multiple_methods.yaml +0 -0
  49. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/ml/tests/diagnostics_overlay.yaml +0 -0
  50. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/ml/tests/train_mva.yaml +0 -0
  51. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/ml/tests/train_mva_def.yaml +0 -0
  52. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/ml/tests/train_mva_with_diagnostics.yaml +0 -0
  53. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/ml/tests/train_mva_with_preffix.yaml +0 -0
  54. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/plotting/tests/2d.yaml +0 -0
  55. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/plotting/tests/fig_size.yaml +0 -0
  56. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/plotting/tests/high_stat.yaml +0 -0
  57. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/plotting/tests/legend.yaml +0 -0
  58. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/plotting/tests/line.yaml +0 -0
  59. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/plotting/tests/name.yaml +0 -0
  60. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/plotting/tests/no_bounds.yaml +0 -0
  61. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/plotting/tests/normalized.yaml +0 -0
  62. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/plotting/tests/plug_fwhm.yaml +0 -0
  63. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/plotting/tests/plug_stats.yaml +0 -0
  64. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/plotting/tests/simple.yaml +0 -0
  65. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/plotting/tests/stats.yaml +0 -0
  66. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/plotting/tests/styling.yaml +0 -0
  67. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/plotting/tests/title.yaml +0 -0
  68. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/plotting/tests/weights.yaml +0 -0
  69. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/rfile/friends.yaml +0 -0
  70. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/stats/fitter/test_simple.yaml +0 -0
  71. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/stats/kde_optimizer/control.json +0 -0
  72. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/stats/kde_optimizer/signal.json +0 -0
  73. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/stats/parameters/data.yaml +0 -0
  74. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/tests/config.json +0 -0
  75. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/tests/config.yaml +0 -0
  76. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/tests/pdf_to_tex.txt +0 -0
  77. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/text/transform.toml +0 -0
  78. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/text/transform.txt +0 -0
  79. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/text/transform_set.toml +0 -0
  80. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/text/transform_set.txt +0 -0
  81. {data_manipulation_utilities-0.2.8.dev720 → data_manipulation_utilities-0.2.8.dev730}/src/dmu_data/text/transform_trf.txt +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.3
2
2
  Name: data-manipulation-utilities
3
- Version: 0.2.8.dev720
3
+ Version: 0.2.8.dev730
4
4
  Summary: Project storing utilities needed to reduce boilerplate code when analyzing data
5
5
  Requires-Python: >=3.10,<3.13
6
6
  Classifier: Programming Language :: Python :: 3
@@ -1483,6 +1483,7 @@ stats:
1483
1483
  ```
1484
1484
 
1485
1485
  it's up to the user to build this dictionary and load it.
1486
+ this can also be a `DictConfig` from the `OmegaConf` project.
1486
1487
 
1487
1488
  ### Pluggins
1488
1489
 
@@ -1448,6 +1448,7 @@ stats:
1448
1448
  ```
1449
1449
 
1450
1450
  it's up to the user to build this dictionary and load it.
1451
+ this can also be a `DictConfig` from the `OmegaConf` project.
1451
1452
 
1452
1453
  ### Pluggins
1453
1454
 
@@ -1,15 +1,28 @@
1
1
  [tool.poetry]
2
2
  name = 'data-manipulation-utilities'
3
3
  description = 'Project storing utilities needed to reduce boilerplate code when analyzing data'
4
- version = "0.2.8.dev720"
4
+ version = "0.2.8.dev730"
5
5
  readme = 'README.md'
6
6
  package-mode = true
7
- packages = [{include='dmu', from='src'}]
8
- include = [
9
- 'src/dmu_data/**/*.yaml',
10
- 'src/dmu_data/**/*.toml',
11
- 'src/dmu_data/**/*.json',
12
- 'src/dmu_data/**/*.txt']
7
+ packages = [
8
+ {include='dmu', from='src'},
9
+ {include='dmu_data', from='src'}]
10
+
11
+ [[tool.poetry.include]]
12
+ path = "src/dmu_data/**/*.yaml"
13
+ format = "wheel"
14
+
15
+ [[tool.poetry.include]]
16
+ path = "src/dmu_data/**/*.toml"
17
+ format = "wheel"
18
+
19
+ [[tool.poetry.include]]
20
+ path = "src/dmu_data/**/*.json"
21
+ format = "wheel"
22
+
23
+ [[tool.poetry.include]]
24
+ path = "src/dmu_data/**/*.txt"
25
+ format = "wheel"
13
26
 
14
27
  [tool.poetry.dependencies]
15
28
  python = '>=3.10, <3.13'
@@ -5,12 +5,12 @@ Module containing plotter class
5
5
  import os
6
6
  import json
7
7
  import math
8
- from typing import Union
9
8
 
10
9
  import numpy
11
10
  import matplotlib.pyplot as plt
12
11
 
13
- from ROOT import RDataFrame
12
+ from ROOT import RDataFrame, RDF
13
+ from omegaconf import DictConfig
14
14
  from dmu.logging.log_store import LogStore
15
15
 
16
16
  log = LogStore.add_logger('dmu:plotting:Plotter')
@@ -20,16 +20,28 @@ class Plotter:
20
20
  Base class of Plotter1D and Plotter2D
21
21
  '''
22
22
  #-------------------------------------
23
- def __init__(self, d_rdf=None, cfg=None):
24
- if not isinstance( cfg, dict):
23
+ def __init__(
24
+ self,
25
+ d_rdf: dict|None =None,
26
+ cfg : dict|DictConfig|None =None):
27
+ '''
28
+ Parameters
29
+ --------------
30
+ d_rdf: Dictionary where
31
+ key : Identifier of dataset
32
+ value: ROOT dataframe representing dataset
33
+
34
+ cfg : Dictionary or DictConfig instance holding configuration
35
+ '''
36
+ if not isinstance( cfg, (dict,DictConfig)):
25
37
  raise ValueError('Config dictionary not passed')
26
38
 
27
39
  if not isinstance(d_rdf, dict):
28
40
  raise ValueError('Dataframe dictionary not passed')
29
41
 
30
42
  self._d_cfg = cfg
31
- self._d_rdf : dict[str, RDataFrame] = { name : self._preprocess_rdf(rdf) for name, rdf in d_rdf.items()}
32
- self._d_wgt : Union[dict[str, Union[numpy.ndarray, None]], None]
43
+ self._d_rdf : dict[str, RDF.RNode] = { name : self._preprocess_rdf(rdf) for name, rdf in d_rdf.items()}
44
+ self._d_wgt : dict[str, numpy.ndarray|None] | None
33
45
 
34
46
  self._title : str = ''
35
47
  #-------------------------------------
@@ -68,9 +80,9 @@ class Plotter:
68
80
 
69
81
  return minx, maxx
70
82
  #-------------------------------------
71
- def _preprocess_rdf(self, rdf : RDataFrame) -> RDataFrame:
83
+ def _preprocess_rdf(self, rdf : RDF.RNode) -> RDF.RNode:
72
84
  '''
73
- rdf (RDataFrame): ROOT dataframe
85
+ rdf (RDF.RNode): ROOT dataframe
74
86
 
75
87
  returns preprocessed dataframe
76
88
  '''
@@ -146,7 +158,7 @@ class Plotter:
146
158
 
147
159
  return rdf
148
160
  # --------------------------------------------
149
- def _print_weights(self, arr_wgt : Union[numpy.ndarray, None], var : str, sample : str) -> None:
161
+ def _print_weights(self, arr_wgt : numpy.ndarray|None, var : str, sample : str) -> None:
150
162
  if arr_wgt is None:
151
163
  log.debug(f'Not using weights for {sample}:{var}')
152
164
  return
@@ -171,7 +183,7 @@ class Plotter:
171
183
 
172
184
  return fig_size
173
185
  #-------------------------------------
174
- def _get_weights(self, var) -> Union[dict[str, Union[numpy.ndarray, None]], None]:
186
+ def _get_weights(self, var) -> dict[str, numpy.ndarray|None]| None:
175
187
  d_cfg = self._d_cfg['plots'][var]
176
188
  if 'weights' not in d_cfg:
177
189
  return None
@@ -186,7 +198,7 @@ class Plotter:
186
198
 
187
199
  return d_weight
188
200
  # --------------------------------------------
189
- def _read_weights(self, name : str, rdf : RDataFrame) -> numpy.ndarray:
201
+ def _read_weights(self, name : str, rdf : RDF.RNode) -> numpy.ndarray:
190
202
  v_col = rdf.GetColumnNames()
191
203
  l_col = [ col.c_str() for col in v_col ]
192
204