dask-ms-2 0.2.33__tar.gz

dask_ms_2-0.2.33/.github/ISSUE_TEMPLATE.md

@@ -0,0 +1,15 @@
+* dask-ms version:
+* Python version:
+* Operating System:
+
+### Description
+
+Describe what you were trying to get done.
+Tell us what happened, what went wrong, and what you expected to happen.
+
+### What I Did
+
+```
+Paste the command(s) you ran and the output.
+If there was a crash, please include the traceback here.
+```

dask_ms_2-0.2.33/.github/PULL_REQUEST_TEMPLATE.md

@@ -0,0 +1,27 @@
+- [ ] Tests added / passed
+
+  ```bash
+  $ py.test -v -s daskms/tests
+  ```
+
+  If the pep8 tests fail, the quickest way to correct
+  this is to run `autopep8` and then `flake8` and
+  `pycodestyle` to fix the remaining issues.
+
+  ```
+  $ pip install -U autopep8 flake8 pycodestyle
+  $ autopep8 -r -i daskms
+  $ flake8 daskms
+  $ pycodestyle daskms
+  ```
+
+- [ ] Fully documented, including `HISTORY.rst` for all changes
+      and one of the `docs/*-api.rst` files for new API
+
+  To build the docs locally:
+
+  ```
+  pip install -r requirements.readthedocs.txt
+  cd docs
+  READTHEDOCS=True make html
+  ```

dask_ms_2-0.2.33/.github/dependabot.yml

@@ -0,0 +1,11 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/code-security/dependabot/dependabot-version-updates/configuration-options-for-the-dependabot.yml-file
+
+version: 2
+updates:
+  - package-ecosystem: "github-actions" # See documentation for possible values
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "weekly"

dask_ms_2-0.2.33/.github/workflows/ci.yml

@@ -0,0 +1,116 @@
+name: Ubuntu CI
+
+on:
+  push:
+    branches:
+    - master
+    tags:
+    - "*"
+  pull_request:
+  schedule:
+    - cron: '30 2 * * 1,4' # Every Monday and Thursday @ 2h30am UTC
+
+jobs:
+  check_skip:
+    runs-on: ubuntu-latest
+    if: |
+      !contains(format('{0} {1} {2}', github.event.head_commit.message, github.event.pull_request.title, github.event.pull_request.body), '[skip ci]')
+    steps:
+      - run: |
+          cat <<'MESSAGE'
+          github.event_name: ${{ toJson(github.event_name) }}
+          github.event:
+          ${{ toJson(github.event) }}
+          MESSAGE
+  test:
+    needs: check_skip
+    runs-on: ubuntu-latest
+    if: "!contains(github.event.head_commit.message, '[skip ci]')"
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.11", "3.12", "3.13"]
+
+    steps:
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v7
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Checkout source
+        uses: actions/checkout@v7
+        with:
+          fetch-depth: 1
+
+      - name: Install dask-ms base
+        run: pip install .[arrow,testing,zarr,casacore]
+
+      - name: Test dask-ms base
+        run: py.test -s -vvv daskms/
+
+      - name: Install dask-ms complete
+        run: pip install .[complete,testing,casacore]
+
+      - name: Test dask-ms complete
+        # xarray >= 2026.x calls zarr.open_group(zarr_format=...), which is
+        # a zarr 3 API; the extras still pin zarr<3, so these two
+        # experimental-zarr tests fail on any current xarray + zarr 2 pair
+        # (dask-ms's own zarr code is unaffected). Deselect until the
+        # experimental zarr support migrates to zarr 3.
+        run: >
+          py.test -s -vvv daskms/
+          --deselect daskms/experimental/zarr/tests/test_zarr.py::test_xarray_to_zarr
+          --deselect daskms/experimental/zarr/tests/test_zarr.py::test_xarray_reading_daskms_written_dataset
+
+      # - name: Debug with tmate on failure
+      #   if: ${{ failure() }}
+      #   uses: mxschmitt/action-tmate@v3
+
+  test_apps:
+    needs: check_skip
+    runs-on: ubuntu-latest
+    if: "!contains(github.event.head_commit.message, '[skip ci]')"
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.13"]
+
+    steps:
+      - name: Create Cache Hash
+        run: |
+          export HASH=$(sha256sum <<EOT | cut -c -16
+          ${{ env.POETRY_VERSION }}
+          EOT
+          )
+          echo "INSTALL_CACHE_HASH=$HASH" >> $GITHUB_ENV
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v7
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Cache Installations
+        id: cache-installs
+        uses: actions/cache@v6
+        with:
+          path: ~/.local
+          key: install-${{ env.INSTALL_CACHE_HASH }}-0
+
+      - name: Checkout source
+        uses: actions/checkout@v7
+        with:
+          fetch-depth: 1
+
+      - name: Install dask-ms complete
+        run: pip install .[complete,testing,casacore]
+
+      - name: Test dask-ms applications
+        run: py.test -s -vvv --applications daskms/
+
+      # - name: Debug with tmate on failure
+      #   if: ${{ failure() }}
+      #   uses: mxschmitt/action-tmate@v3
+
+# Publishing lives in publish-pypi.yaml (PyPI Trusted Publishing is
+# registered against that workflow + environment `pypi`); the deploy job
+# previously here raced with it on tag pushes.

dask_ms_2-0.2.33/.github/workflows/pre-commit.yml

@@ -0,0 +1,15 @@
+name: pre-commit
+
+on: [push]
+
+jobs:
+  pre-commit:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v7
+      with:
+        fetch-depth: 1
+    - uses: actions/setup-python@v7
+      with:
+        python-version: 3.11
+    - uses: pre-commit/action@v3.0.1

dask_ms_2-0.2.33/.github/workflows/publish-pypi.yaml

@@ -0,0 +1,33 @@
+name: Publish dask-ms-2 package
+
+on:
+  push:
+    tags: [ 'v*.*.*' ]
+
+jobs:
+  build-n-publish:
+    name: Build and publish dask-ms-2 to PyPI
+    runs-on: ubuntu-latest
+    environment: pypi
+    permissions:
+      id-token: write # PyPI Trusted Publishing (OIDC) -- no API token needed
+    steps:
+    - uses: actions/checkout@main
+    - name: Set up Python 3.x
+      uses: actions/setup-python@v5
+      with:
+        python-version: "3.x"
+    - name: Install pypa/build
+      run: |
+        python -m pip install --upgrade pip
+        pip install build
+    - name: Build a binary wheel and a source tarball
+      run: >-
+        python -m
+        build
+        --sdist
+        --wheel
+        --outdir dist/
+        .
+    - name: Publish distribution to PyPI
+      uses: pypa/gh-action-pypi-publish@release/v1

dask_ms_2-0.2.33/.github/workflows/readthedocs.yml

@@ -0,0 +1,22 @@
+# .github/workflows/documentation-links.yml
+
+name: readthedocs/actions
+on:
+  pull_request_target:
+    types:
+      - opened
+    # Execute this action only on PRs that touch
+    # documentation files.
+    # paths:
+    #   - "doc/**"
+
+permissions:
+  pull-requests: write
+
+jobs:
+  documentation-links:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: readthedocs/actions/preview@v1
+        with:
+          project-slug: "dask-ms"

dask_ms_2-0.2.33/.gitignore

@@ -0,0 +1,106 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+env/
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+.hypothesis/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# pyenv
+.python-version
+
+# celery beat schedule file
+celerybeat-schedule
+
+# SageMath parsed files
+*.sage.py
+
+# dotenv
+.env
+
+# virtualenv
+.venv
+venv/
+ENV/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Visual Studio code settings
+.vscode/
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+pixi.lock
+pixi.toml

dask_ms_2-0.2.33/.pre-commit-config.yaml

@@ -0,0 +1,15 @@
+# See https://pre-commit.com for more information
+# See https://pre-commit.com/hooks.html for more hooks
+repos:
+-   repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.5.0
+    hooks:
+    -   id: trailing-whitespace
+    -   id: end-of-file-fixer
+    -   id: check-yaml
+    -   id: check-added-large-files
+-   repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.1.3
+    hooks:
+    -   id: ruff-format
+        name: ruff format

dask_ms_2-0.2.33/.travis/python36.docker

@@ -0,0 +1,20 @@
+FROM kernsuite/base:5
+
+# Install base requirements
+RUN DEBIAN_FRONTEND=noninteractive add-apt-repository ppa:deadsnakes/ppa -y
+RUN DEBIAN_FRONTEND=noninteractive apt update -y
+RUN DEBIAN_FRONTEND=noninteractive apt install -y build-essential curl git python3-distutils  python3.6 python3.6-dev
+RUN curl https://bootstrap.pypa.io/get-pip.py -o get-pip.py
+RUN python3.6 get-pip.py
+ADD . /code
+WORKDIR /code
+
+# Test without xarray
+RUN python3.6 -m pip install .[testing]
+RUN python3.6 -m pip freeze
+RUN python3.6 -m pytest --flake8 -s -vvv /code/daskms
+
+# Test with xarray
+RUN python3.6 -m pip install .[testing,xarray]
+RUN python3.6 -m pip freeze
+RUN python3.6 -m pytest --flake8 -s -vvv /code/daskms

dask_ms_2-0.2.33/.travis/python37.docker

@@ -0,0 +1,20 @@
+FROM kernsuite/base:5
+
+# Install base requirements
+RUN DEBIAN_FRONTEND=noninteractive add-apt-repository ppa:deadsnakes/ppa -y
+RUN DEBIAN_FRONTEND=noninteractive apt update -y
+RUN DEBIAN_FRONTEND=noninteractive apt install -y build-essential curl git python3-distutils  python3.7 python3.7-dev
+RUN curl https://bootstrap.pypa.io/get-pip.py -o get-pip.py
+RUN python3.7 get-pip.py
+ADD . /code
+WORKDIR /code
+
+# Test without xarray
+RUN python3.7 -m pip install .[testing]
+RUN python3.7 -m pip freeze
+RUN python3.7 -m pytest --flake8 -s -vvv /code/daskms
+
+# Test with xarray
+RUN python3.7 -m pip install .[testing,xarray]
+RUN python3.7 -m pip freeze
+RUN python3.7 -m pytest --flake8 -s -vvv /code/daskms

dask_ms_2-0.2.33/.travis/python38.docker

@@ -0,0 +1,20 @@
+FROM kernsuite/base:5
+
+# Install base requirements
+RUN DEBIAN_FRONTEND=noninteractive add-apt-repository ppa:deadsnakes/ppa -y
+RUN DEBIAN_FRONTEND=noninteractive apt update -y
+RUN DEBIAN_FRONTEND=noninteractive apt install -y build-essential curl git python3-distutils  python3.8 python3.8-dev
+RUN curl https://bootstrap.pypa.io/get-pip.py -o get-pip.py
+RUN python3.8 get-pip.py
+ADD . /code
+WORKDIR /code
+
+# Test without xarray
+RUN python3.8 -m pip install .[testing]
+RUN python3.8 -m pip freeze
+RUN python3.8 -m pytest --flake8 -s -vvv /code/daskms
+
+# Test with xarray
+RUN python3.8 -m pip install .[testing,xarray]
+RUN python3.8 -m pip freeze
+RUN python3.8 -m pytest --flake8 -s -vvv /code/daskms

dask_ms_2-0.2.33/.travis.yml

@@ -0,0 +1,29 @@
+language: python
+matrix:
+  include:
+  - env: TARGET=python36
+  - env: TARGET=python37
+  - env: TARGET=python38
+sudo: required
+services:
+- docker
+before_install:
+- true
+install:
+- docker build . -t ${TARGET} -f .travis/${TARGET}.docker
+before_script:
+- true
+script:
+- true
+deploy:
+  provider: pypi
+  user: sperkins
+  distributions: "sdist bdist_wheel"
+  skip_existing: true
+  skip_cleanup: true
+  password:
+    secure: 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
+  on:
+    tags: true
+    branch: master
+    repo: ska-sa/dask-ms

dask_ms_2-0.2.33/AUTHORS.rst

@@ -0,0 +1,13 @@
+=======
+Credits
+=======
+
+Development Lead
+----------------
+
+* Simon Perkins <sperkins@ska.ac.za>
+
+Contributors
+------------
+
+None yet. Why not be the first?

dask_ms_2-0.2.33/CONTRIBUTING.rst

@@ -0,0 +1,136 @@
+.. highlight:: shell
+
+============
+Contributing
+============
+
+Contributions are welcome, and they are greatly appreciated! Every little bit
+helps, and credit will always be given.
+
+You can contribute in many ways:
+
+Types of Contributions
+----------------------
+
+Report Bugs
+~~~~~~~~~~~
+
+Report bugs at https://github.com/ska-sa/dask-ms/issues.
+
+If you are reporting a bug, please include:
+
+* Your operating system name and version.
+* Any details about your local setup that might be helpful in troubleshooting.
+* Detailed steps to reproduce the bug.
+
+Fix Bugs
+~~~~~~~~
+
+Look through the GitHub issues for bugs. Anything tagged with "bug" and "help
+wanted" is open to whoever wants to implement it.
+
+Implement Features
+~~~~~~~~~~~~~~~~~~
+
+Look through the GitHub issues for features. Anything tagged with "enhancement"
+and "help wanted" is open to whoever wants to implement it.
+
+Write Documentation
+~~~~~~~~~~~~~~~~~~~
+
+dask-ms could always use more documentation, whether as part of the
+official dask-ms docs, in docstrings, or even on the web in blog posts,
+articles, and such.
+
+Submit Feedback
+~~~~~~~~~~~~~~~
+
+The best way to send feedback is to file an issue at https://github.com/ska-sa/dask-ms/issues.
+
+If you are proposing a feature:
+
+* Explain in detail how it would work.
+* Keep the scope as narrow as possible, to make it easier to implement.
+* Remember that this is a volunteer-driven project, and that contributions
+  are welcome :)
+
+Get Started!
+------------
+
+Ready to contribute? Here's how to set up `daskms` for local development.
+
+1. Fork the `daskms` repo on GitHub.
+2. Clone your fork locally::
+
+    $ git clone git@github.com:your_name_here/daskms.git
+
+3. Install your local copy into a virtualenv. Assuming you have virtualenvwrapper installed, this is how you set up your fork for local development::
+
+    $ mkvirtualenv daskms
+    $ cd daskms/
+    $ python setup.py develop
+
+4. Create a branch for local development::
+
+    $ git checkout -b name-of-your-bugfix-or-feature
+
+   Now you can make your changes locally.
+
+5. When you're done making changes, check that your changes pass flake8 and the
+   tests, including testing other Python versions with tox::
+
+    $ flake8 daskms tests
+    $ python setup.py test or py.test
+    $ tox
+
+   To get flake8 and tox, just pip install them into your virtualenv.
+
+6. Commit your changes and push your branch to GitHub::
+
+    $ git add .
+    $ git commit -m "Your detailed description of your changes."
+    $ git push origin name-of-your-bugfix-or-feature
+
+7. Submit a pull request through the GitHub website.
+
+Pull Request Guidelines
+-----------------------
+
+Before you submit a pull request, check that it meets these guidelines:
+
+1. The pull request should include tests.
+2. If the pull request adds functionality, the docs should be updated. Put
+   your new functionality into a function with a docstring, and add the
+   feature to the list in README.rst.
+3. The pull request should work for Python 2.7, 3.4, 3.5 and 3.6, and for PyPy. Check
+   https://travis-ci.org/ska-sa/dask-ms/pull_requests
+   and make sure that the tests pass for all supported Python versions.
+
+Tips
+----
+
+To run a subset of tests::
+
+$ py.test -vvv daskms/tests
+
+
+Deploying
+---------
+
+A reminder for the maintainers on how to deploy.
+
+1. Update HISTORY.rst with the intended release number Z.Y.X and commit to git.
+
+2. Bump the version number with bump2version. This creates a new git commit,
+   as well as an annotated tag Z.Y.X for the release.
+   If your current version is Z.Y.W and the new version is Z.Y.X call::
+
+       $ python -m pip install bump2version
+       $ bump2version --current-version Z.Y.W --new-version Z.Y.X patch
+
+3. Push the release commit and new tag up::
+
+       $ git push --follow-tags
+
+4. Travis should automatically deploy the tagged release to PyPI
+   if the automated tests pass.