cvmatrix 3.2.1__tar.gz → 3.2.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (47) hide show
  1. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/.github/actions/test/action.yml +3 -1
  2. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/.github/workflows/pull_request_test_workflow.yml +2 -2
  3. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/.github/workflows/test_workflow.yml +2 -2
  4. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/CHANGELOG.md +9 -0
  5. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/PKG-INFO +5 -2
  6. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/README.md +2 -0
  7. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/cvmatrix/__init__.py +1 -1
  8. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/cvmatrix/cvmatrix.py +18 -16
  9. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/pyproject.toml +3 -2
  10. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/uv.lock +355 -27
  11. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/.github/actions/build/action.yml +0 -0
  12. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/.github/actions/release/action.yml +0 -0
  13. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/.github/workflows/package_workflow.yml +0 -0
  14. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/.github/workflows/pull_request_package_workflow.yml +0 -0
  15. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/.gitignore +0 -0
  16. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/.readthedocs.yaml +0 -0
  17. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/CONTRIBUTING.md +0 -0
  18. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/LICENSE +0 -0
  19. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/benchmarks/README.md +0 -0
  20. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/benchmarks/__init__.py +0 -0
  21. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/benchmarks/benchmark.py +0 -0
  22. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/benchmarks/benchmark_cvmatrix.png +0 -0
  23. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/benchmarks/benchmark_cvmatrix_numpy_vs_jax.png +0 -0
  24. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/benchmarks/benchmark_cvmatrix_vs_naive.png +0 -0
  25. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/benchmarks/benchmark_jax_variants.png +0 -0
  26. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/benchmarks/benchmark_results.csv +0 -0
  27. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/benchmarks/benchmark_results_jax.csv +0 -0
  28. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/benchmarks/plot_benchmark.py +0 -0
  29. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/cvmatrix/partitioner.py +0 -0
  30. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/docs/CONTRIBUTING.md +0 -0
  31. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/docs/Makefile +0 -0
  32. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/docs/README.md +0 -0
  33. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/docs/api.rst +0 -0
  34. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/docs/conf.py +0 -0
  35. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/docs/index.rst +0 -0
  36. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/docs/make.bat +0 -0
  37. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/docs/requirements.txt +0 -0
  38. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/docs/source/cvmatrix.rst +0 -0
  39. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/docs/source/cvmatrix_module.rst +0 -0
  40. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/docs/source/partitioner_module.rst +0 -0
  41. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/examples/__init__.py +0 -0
  42. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/examples/training_matrices.py +0 -0
  43. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/examples/training_matrices_jax.py +0 -0
  44. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/tests/__init__.py +0 -0
  45. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/tests/load_data.py +0 -0
  46. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/tests/naive_cvmatrix.py +0 -0
  47. {cvmatrix-3.2.1 → cvmatrix-3.2.2}/tests/test_cvmatrix.py +0 -0
{cvmatrix-3.2.1 → cvmatrix-3.2.2}/.github/actions/test/action.yml RENAMED
@@ -33,5 +33,7 @@ runs:
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  # are skipped (pytest.importorskip), verifying the numpy-only path.
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  - name: Run tests
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  run: |
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- uv run pytest tests --doctest-modules --junitxml=junit/test-results.xml --cov=cvmatrix/ --cov-report=xml --typeguard-packages=cvmatrix/
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+ # NOTE: --typeguard-packages takes the PACKAGE name "cvmatrix" (not a path); a
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+ # trailing slash silently instruments nothing, disabling runtime type checks.
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+ uv run pytest tests --doctest-modules --junitxml=junit/test-results.xml --cov=cvmatrix/ --cov-report=xml --typeguard-packages=cvmatrix
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  shell: bash
{cvmatrix-3.2.1 → cvmatrix-3.2.2}/.github/workflows/pull_request_test_workflow.yml RENAMED
@@ -18,7 +18,7 @@ jobs:
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  fail-fast: false
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  matrix:
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  os: [ubuntu-latest, windows-latest, macos-latest]
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- python-version: ["3.11", "3.12", "3.13", "3.14"]
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+ python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"]
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  steps:
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  - uses: actions/checkout@v4
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  - uses: ./.github/actions/test
@@ -42,7 +42,7 @@ jobs:
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  fail-fast: false
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  matrix:
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  os: [ubuntu-latest, windows-latest, macos-latest]
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- python-version: ["3.11", "3.12", "3.13", "3.14"]
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+ python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"]
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  steps:
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  - uses: actions/checkout@v4
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  - uses: ./.github/actions/test
{cvmatrix-3.2.1 → cvmatrix-3.2.2}/.github/workflows/test_workflow.yml RENAMED
@@ -18,7 +18,7 @@ jobs:
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  fail-fast: false
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  matrix:
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  os: [ubuntu-latest, windows-latest, macos-latest]
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- python-version: ["3.11", "3.12", "3.13", "3.14"]
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+ python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"]
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  steps:
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  - uses: actions/checkout@v4
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  - uses: ./.github/actions/test
@@ -42,7 +42,7 @@ jobs:
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  fail-fast: false
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  matrix:
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  os: [ubuntu-latest, windows-latest, macos-latest]
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- python-version: ["3.11", "3.12", "3.13", "3.14"]
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+ python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"]
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  steps:
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  - uses: actions/checkout@v4
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  - uses: ./.github/actions/test
{cvmatrix-3.2.1 → cvmatrix-3.2.2}/CHANGELOG.md RENAMED
@@ -5,6 +5,15 @@ All notable changes to this project will be documented in this file.
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  The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
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  and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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+ ## [3.2.2] - 2026-07-06
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+
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+ ### Changed
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+ - Lowered the minimum supported Python version from 3.11 to 3.10 (`requires-python = ">=3.10, <3.15"`). The code base uses no Python-3.11-only features; this broadens compatibility for downstream packages that still support Python 3.10. Python 3.10 is now included in the CI test matrices. No functional changes.
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+
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+ ### Fixed
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+ - The fold-index parameters (`validation_indices` / `val_indices`) are now annotated with a new `IndexArray` alias that `_enable_jax_typing()` broadens to admit `jax.Array`, matching the `Array`/`Scalar` aliases introduced in 3.2.1. Previously they were annotated as `npt.NDArray[np.int_]` only, so running the test suite with `typeguard` instrumentation enabled failed on the `jax.jit`/`jax.vmap` trace tests (the indices are abstract tracers under tracing). Runtime behavior is unchanged; this only affects runtime type checking.
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+ - CI now actually enables `typeguard` instrumentation during tests: the test command passed `--typeguard-packages=cvmatrix/` (a path, with a trailing slash) instead of the package name `cvmatrix`, which silently instrumented nothing and masked the annotation issue above.
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+
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  ## [3.2.1] - 2026-07-01
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  ### Changed
{cvmatrix-3.2.1 → cvmatrix-3.2.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: cvmatrix
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- Version: 3.2.1
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+ Version: 3.2.2
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  Summary: Fast computation of possibly weighted and possibly centered/scaled training set kernel matrices in a cross-validation setting.
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  Project-URL: Homepage, https://cvmatrix.readthedocs.io/en/latest/
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  Project-URL: Repository, https://github.com/Sm00thix/CVMatrix
@@ -8,11 +8,12 @@ Author-email: Sm00thix <oleemail@icloud.com>
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  Maintainer-email: Sm00thix <oleemail@icloud.com>
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  License-Expression: Apache-2.0
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  License-File: LICENSE
11
+ Classifier: Programming Language :: Python :: 3.10
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  Classifier: Programming Language :: Python :: 3.11
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  Classifier: Programming Language :: Python :: 3.12
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  Classifier: Programming Language :: Python :: 3.13
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  Classifier: Programming Language :: Python :: 3.14
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- Requires-Python: <3.15,>=3.11
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+ Requires-Python: <3.15,>=3.10
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  Requires-Dist: numpy<3.0.0,>=2.0.0
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  Provides-Extra: jax
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  Requires-Dist: jax>=0.4.0; extra == 'jax'
@@ -32,6 +33,8 @@ Description-Content-Type: text/markdown
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  [![Documentation Status](https://readthedocs.org/projects/cvmatrix/badge/?version=latest)](https://cvmatrix.readthedocs.io/en/latest/?badge=latest)
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+ [![CodeFactor](https://www.codefactor.io/repository/github/sm00thix/cvmatrix/badge/main)](https://www.codefactor.io/repository/github/sm00thix/cvmatrix/overview/main)
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+
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  [![Tests Status](https://github.com/Sm00thix/CVMatrix/actions/workflows/test_workflow.yml/badge.svg)](https://github.com/Sm00thix/CVMatrix/actions/workflows/test_workflow.yml)
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  [![Test Coverage](https://coveralls.io/repos/github/sm00thix/cvmatrix/badge.svg?branch=main)](https://coveralls.io/github/sm00thix/cvmatrix?branch=main)
{cvmatrix-3.2.1 → cvmatrix-3.2.2}/README.md RENAMED
@@ -12,6 +12,8 @@
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  [![Documentation Status](https://readthedocs.org/projects/cvmatrix/badge/?version=latest)](https://cvmatrix.readthedocs.io/en/latest/?badge=latest)
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+ [![CodeFactor](https://www.codefactor.io/repository/github/sm00thix/cvmatrix/badge/main)](https://www.codefactor.io/repository/github/sm00thix/cvmatrix/overview/main)
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+
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  [![Tests Status](https://github.com/Sm00thix/CVMatrix/actions/workflows/test_workflow.yml/badge.svg)](https://github.com/Sm00thix/CVMatrix/actions/workflows/test_workflow.yml)
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  [![Test Coverage](https://coveralls.io/repos/github/sm00thix/cvmatrix/badge.svg?branch=main)](https://coveralls.io/github/sm00thix/cvmatrix?branch=main)
{cvmatrix-3.2.1 → cvmatrix-3.2.2}/cvmatrix/__init__.py RENAMED
@@ -1,4 +1,4 @@
1
- __version__ = "3.2.1"
1
+ __version__ = "3.2.2"
2
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  __all__ = ["CVMatrix", "Partitioner"]
3
3
  from .cvmatrix import CVMatrix
4
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  from .partitioner import Partitioner
{cvmatrix-3.2.1 → cvmatrix-3.2.2}/cvmatrix/cvmatrix.py RENAMED
@@ -26,6 +26,9 @@ from numpy import typing as npt
26
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  # globals at call time, so the broadened unions take effect once JAX is in use.
27
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  Array = np.ndarray
28
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  Scalar = Union[np.floating, float, int]
29
+ # Integer index arrays (fold validation indices). Under jax.jit/jax.vmap these are
30
+ # abstract tracers, so the alias is broadened alongside ``Array``/``Scalar``.
31
+ IndexArray = npt.NDArray[np.int_]
29
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  # ``dtype`` specifier: ``npt.DTypeLike`` cleanly admits both numpy float types and
30
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  # JAX scalar dtypes (e.g. ``jnp.float64``) without importing JAX.
31
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  FloatDType = npt.DTypeLike
@@ -49,9 +52,10 @@ def _enable_jax_typing() -> None:
49
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  """
50
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  import jax
51
54
 
52
- global Array, Scalar, _TRACER_TYPES
55
+ global Array, Scalar, IndexArray, _TRACER_TYPES
53
56
  Array = Union[np.ndarray, jax.Array]
54
57
  Scalar = Union[np.floating, jax.Array, float, int]
58
+ IndexArray = Union[npt.NDArray[np.int_], jax.Array]
55
59
  _TRACER_TYPES = (jax.core.Tracer,)
56
60
 
57
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@@ -328,10 +332,8 @@ class CVMatrix:
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  self._init_stats()
329
333
 
330
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  def training_XTX(
331
- self, validation_indices: npt.NDArray[np.int_]
332
- ) -> Tuple[
333
- Array, Tuple[Optional[Array], Optional[Array], None, None]
334
- ]:
335
+ self, validation_indices: IndexArray
336
+ ) -> Tuple[Array, Tuple[Optional[Array], Optional[Array], None, None]]:
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  r"""
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  Computes the training set :math:`\mathbf{X}^{\mathbf{T}}\mathbf{W}\mathbf{X}`
337
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  corresponding to every sample except those at the `validation_indices`. Also
@@ -340,7 +342,7 @@ class CVMatrix:
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341
343
  Parameters
342
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  ----------
343
- validation_indices : npt.NDArray[np.int_]
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+ validation_indices : IndexArray
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  An integer array of indices for the validation set for which to
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  return the corresponding training set
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  :math:`\mathbf{X}^{\mathbf{T}}\mathbf{W}\mathbf{X}`. The validation indices
@@ -383,7 +385,7 @@ class CVMatrix:
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  return self._training_matrices(True, False, validation_indices)
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385
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  def training_XTY(
386
- self, validation_indices: npt.NDArray[np.int_]
388
+ self, validation_indices: IndexArray
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  ) -> Tuple[
388
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  Array,
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  Tuple[
@@ -403,7 +405,7 @@ class CVMatrix:
403
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404
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  Parameters
405
407
  ----------
406
- validation_indices : npt.NDArray[np.int_]
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+ validation_indices : IndexArray
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  An integer array of indices for the validation set for which to
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  return the corresponding training set
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  :math:`\mathbf{X}^{\mathbf{T}}\mathbf{W}\mathbf{Y}`. The validation indices
@@ -449,7 +451,7 @@ class CVMatrix:
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  return self._training_matrices(False, True, validation_indices)
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451
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  def training_XTX_XTY(
452
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+ self, validation_indices: IndexArray
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455
  ) -> Tuple[
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  Tuple[Array, Array],
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  Tuple[
@@ -471,7 +473,7 @@ class CVMatrix:
471
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472
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  Parameters
473
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  ----------
474
- validation_indices : npt.NDArray[np.int_]
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+ validation_indices : IndexArray
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477
  An integer array of indices for the validation set for which to
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  return the corresponding training set
477
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  :math:`\mathbf{X}^{\mathbf{T}}\mathbf{W}\mathbf{X}` and
@@ -517,7 +519,7 @@ class CVMatrix:
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  return self._training_matrices(True, True, validation_indices)
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519
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  def training_statistics(
520
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+ self, validation_indices: IndexArray
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  ) -> Tuple[
522
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  Optional[Array],
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  Optional[Array],
@@ -587,7 +589,7 @@ class CVMatrix:
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  return x
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589
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  def _get_sum_w_train_and_num_nonzero_w_train(
590
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592
+ self, val_indices: IndexArray
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593
  ) -> Tuple[Scalar, Scalar]:
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594
  """
593
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  Returns a tuple containing the sum of weights in the training set and the number
@@ -631,7 +633,7 @@ class CVMatrix:
631
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632
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  def _compute_training_stats(
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  self,
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+ val_indices: IndexArray,
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  X_val: Optional[Array],
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  Y_val: Optional[Array],
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  return_X_mean: bool,
@@ -752,7 +754,7 @@ class CVMatrix:
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754
  )
753
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754
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  def _training_matrices(
755
- self, return_XTX: bool, return_XTY: bool, val_indices: npt.NDArray[np.int_]
757
+ self, return_XTX: bool, return_XTY: bool, val_indices: IndexArray
756
758
  ) -> Tuple[
757
759
  Union[Array, Tuple[Array, Array]],
758
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  Tuple[
@@ -777,7 +779,7 @@ class CVMatrix:
777
779
  Whether to return the training set
778
780
  :math:`\mathbf{X}^{\mathbf{T}}\mathbf{W}\mathbf{Y}`.
779
781
 
780
- validation_indices : npt.NDArray[np.int_]
782
+ validation_indices : IndexArray
781
783
  An integer array of indices for the validation set for which to
782
784
  return the corresponding training set
783
785
  :math:`\mathbf{X}^{\mathbf{T}}\mathbf{W}\mathbf{X}` and
@@ -896,7 +898,7 @@ class CVMatrix:
896
898
  )
897
899
 
898
900
  def _get_val_matrices(
899
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901
+ self, val_indices: IndexArray, return_XTY: bool
900
902
  ) -> Tuple[
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  Array,
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  Array,
{cvmatrix-3.2.1 → cvmatrix-3.2.2}/pyproject.toml RENAMED
@@ -1,13 +1,14 @@
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  [project]
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  name = "cvmatrix"
3
- version = "3.2.1"
3
+ version = "3.2.2"
4
4
  description = "Fast computation of possibly weighted and possibly centered/scaled training set kernel matrices in a cross-validation setting."
5
5
  authors = [{ name = "Sm00thix", email = "oleemail@icloud.com" }]
6
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  maintainers = [{ name = "Sm00thix", email = "oleemail@icloud.com" }]
7
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  license = "Apache-2.0"
8
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  readme = "README.md"
9
- requires-python = ">=3.11, <3.15"
9
+ requires-python = ">=3.10, <3.15"
10
10
  classifiers = [
11
+ "Programming Language :: Python :: 3.10",
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  "Programming Language :: Python :: 3.11",
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  "Programming Language :: Python :: 3.12",
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  "Programming Language :: Python :: 3.13",
{cvmatrix-3.2.1 → cvmatrix-3.2.2}/uv.lock RENAMED
@@ -1,6 +1,6 @@
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  version = 1
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  revision = 3
3
- requires-python = ">=3.11, <3.15"
3
+ requires-python = ">=3.10, <3.15"
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  resolution-markers = [
5
5
  "python_full_version >= '3.14' and sys_platform == 'win32'",
6
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  "python_full_version >= '3.14' and sys_platform == 'emscripten'",
@@ -11,9 +11,10 @@ resolution-markers = [
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  "python_full_version == '3.12.*' and sys_platform == 'emscripten'",
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  "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'",
13
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  "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'",
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- "python_full_version < '3.12' and sys_platform == 'win32'",
15
- "python_full_version < '3.12' and sys_platform == 'emscripten'",
16
- "python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'",
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+ "python_full_version == '3.11.*' and sys_platform == 'win32'",
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+ "python_full_version == '3.11.*' and sys_platform == 'emscripten'",
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+ "python_full_version == '3.11.*' and sys_platform != 'emscripten' and sys_platform != 'win32'",
17
+ "python_full_version < '3.11'",
17
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  ]
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19
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  [[package]]
@@ -31,6 +32,20 @@ version = "7.14.3"
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  source = { registry = "https://pypi.org/simple" }
32
33
  sdist = { url = "https://files.pythonhosted.org/packages/b4/91/0a7c28934e50d8ac9a7b117712d176f2953c3170bccced5eaacfa3e96175/coverage-7.14.3.tar.gz", hash = "sha256:1a7563a443f3d53fdeb040ec8c9f7466aed7ca3dc5891aa09d3ca3625fa4387f", size = 924398, upload-time = "2026-06-22T23:10:25.584Z" }
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  wheels = [
35
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133
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126
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146
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425
669
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426
670
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427
671
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428
672
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673
+ resolution-markers = [
674
+ "python_full_version >= '3.14' and sys_platform == 'win32'",
675
+ "python_full_version >= '3.14' and sys_platform == 'emscripten'",
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+ "python_full_version >= '3.14' and sys_platform != 'emscripten' and sys_platform != 'win32'",
677
+ "python_full_version == '3.13.*' and sys_platform == 'win32'",
678
+ "python_full_version == '3.12.*' and sys_platform == 'win32'",
679
+ "python_full_version == '3.13.*' and sys_platform == 'emscripten'",
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+ "python_full_version == '3.12.*' and sys_platform == 'emscripten'",
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+ "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'",
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+ "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'",
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+ "python_full_version == '3.11.*' and sys_platform == 'emscripten'",
685
+ "python_full_version == '3.11.*' and sys_platform != 'emscripten' and sys_platform != 'win32'",
686
+ ]
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687
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+ { name = "numpy", version = "2.4.6", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version == '3.11.*'" },
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689
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- { name = "python-dateutil" },
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+ { name = "python-dateutil", marker = "python_full_version >= '3.11'" },
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+ { name = "tzdata", marker = "(python_full_version >= '3.11' and sys_platform == 'emscripten') or (python_full_version >= '3.11' and sys_platform == 'win32')" },
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692
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693
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694
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@@ -507,10 +765,12 @@ version = "9.1.1"
507
765
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508
766
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509
767
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768
+ { name = "exceptiongroup", marker = "python_full_version < '3.11'" },
510
769
  { name = "iniconfig" },
511
770
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{cvmatrix-3.2.1 → cvmatrix-3.2.2}/.readthedocs.yaml RENAMED
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{cvmatrix-3.2.1 → cvmatrix-3.2.2}/CONTRIBUTING.md RENAMED
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