cunibs 0.1.0__tar.gz

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  1. cunibs-0.1.0/.github/workflows/wheels.yml +84 -0
  2. cunibs-0.1.0/.gitignore +15 -0
  3. cunibs-0.1.0/.gitmodules +3 -0
  4. cunibs-0.1.0/CMakeLists.txt +99 -0
  5. cunibs-0.1.0/LICENSE +674 -0
  6. cunibs-0.1.0/PKG-INFO +248 -0
  7. cunibs-0.1.0/README.md +232 -0
  8. cunibs-0.1.0/external/AMGX/.github/ISSUE_TEMPLATE/bug-report.md +37 -0
  9. cunibs-0.1.0/external/AMGX/.github/ISSUE_TEMPLATE/compilation-issue-report.md +37 -0
  10. cunibs-0.1.0/external/AMGX/.gitignore +11 -0
  11. cunibs-0.1.0/external/AMGX/CHANGELOG +118 -0
  12. cunibs-0.1.0/external/AMGX/CMakeLists.txt +403 -0
  13. cunibs-0.1.0/external/AMGX/LICENSES/BSD-3-Clause.txt +26 -0
  14. cunibs-0.1.0/external/AMGX/NOTICES +269 -0
  15. cunibs-0.1.0/external/AMGX/README.md +207 -0
  16. cunibs-0.1.0/external/AMGX/ReleaseVersion.txt +1 -0
  17. cunibs-0.1.0/external/AMGX/ci/README.md +37 -0
  18. cunibs-0.1.0/external/AMGX/ci/containers/x86_64-ubuntu18.04-gnu7-cuda10.2.py +38 -0
  19. cunibs-0.1.0/external/AMGX/ci/containers/x86_64-ubuntu18.04-gnu8-cuda11.0.py +38 -0
  20. cunibs-0.1.0/external/AMGX/ci/containers/x86_64-ubuntu18.04-llvm9-cuda11.0.py +42 -0
  21. cunibs-0.1.0/external/AMGX/ci/containers/x86_64-ubuntu20.04-nvhpc20.9.py +67 -0
  22. cunibs-0.1.0/external/AMGX/ci/run.sh +55 -0
  23. cunibs-0.1.0/external/AMGX/ci/test.sh +26 -0
  24. cunibs-0.1.0/external/AMGX/doc/AMGX_Reference.pdf +0 -0
  25. cunibs-0.1.0/external/AMGX/examples/CMakeLists.txt +113 -0
  26. cunibs-0.1.0/external/AMGX/examples/Makefile.cray +46 -0
  27. cunibs-0.1.0/external/AMGX/examples/amgxP_c.h +90 -0
  28. cunibs-0.1.0/external/AMGX/examples/amgxP_capi.h +135 -0
  29. cunibs-0.1.0/external/AMGX/examples/amgx_capi.c +527 -0
  30. cunibs-0.1.0/external/AMGX/examples/amgx_capi.h +783 -0
  31. cunibs-0.1.0/external/AMGX/examples/amgx_capi_multi.c +420 -0
  32. cunibs-0.1.0/external/AMGX/examples/amgx_mpi_capi.c +439 -0
  33. cunibs-0.1.0/external/AMGX/examples/amgx_mpi_capi_agg.c +600 -0
  34. cunibs-0.1.0/external/AMGX/examples/amgx_mpi_capi_cla.c +619 -0
  35. cunibs-0.1.0/external/AMGX/examples/amgx_mpi_capi_multi.c +348 -0
  36. cunibs-0.1.0/external/AMGX/examples/amgx_mpi_poisson5pt.c +436 -0
  37. cunibs-0.1.0/external/AMGX/examples/amgx_mpi_poisson7.c +371 -0
  38. cunibs-0.1.0/external/AMGX/examples/amgx_spmv_example/Makefile +44 -0
  39. cunibs-0.1.0/external/AMGX/examples/amgx_spmv_example/amgx_spmv_distributed_internal.cu +297 -0
  40. cunibs-0.1.0/external/AMGX/examples/amgx_spmv_example/amgx_spmv_internal.cu +150 -0
  41. cunibs-0.1.0/external/AMGX/examples/amgx_spmv_test.c +484 -0
  42. cunibs-0.1.0/external/AMGX/examples/amgx_test_common.h +106 -0
  43. cunibs-0.1.0/external/AMGX/examples/convert.c +49 -0
  44. cunibs-0.1.0/external/AMGX/examples/eigen_examples/CMakeLists.txt +55 -0
  45. cunibs-0.1.0/external/AMGX/examples/eigen_examples/eigensolver.c +231 -0
  46. cunibs-0.1.0/external/AMGX/examples/eigen_examples/eigensolver_mpi.c +325 -0
  47. cunibs-0.1.0/external/AMGX/examples/generate_poisson.cu +61 -0
  48. cunibs-0.1.0/external/AMGX/examples/generate_poisson7_dist_renum.cu +175 -0
  49. cunibs-0.1.0/external/AMGX/examples/install_makefiles_mpi/Makefile +46 -0
  50. cunibs-0.1.0/external/AMGX/examples/install_makefiles_nompi/Makefile +27 -0
  51. cunibs-0.1.0/external/AMGX/examples/matrix.mtx +63 -0
  52. cunibs-0.1.0/external/AMGX/external/rapidjson/include/rapidjson/document.h +821 -0
  53. cunibs-0.1.0/external/AMGX/external/rapidjson/include/rapidjson/filestream.h +46 -0
  54. cunibs-0.1.0/external/AMGX/external/rapidjson/include/rapidjson/internal/pow10.h +54 -0
  55. cunibs-0.1.0/external/AMGX/external/rapidjson/include/rapidjson/internal/stack.h +82 -0
  56. cunibs-0.1.0/external/AMGX/external/rapidjson/include/rapidjson/internal/strfunc.h +24 -0
  57. cunibs-0.1.0/external/AMGX/external/rapidjson/include/rapidjson/prettywriter.h +156 -0
  58. cunibs-0.1.0/external/AMGX/external/rapidjson/include/rapidjson/rapidjson.h +525 -0
  59. cunibs-0.1.0/external/AMGX/external/rapidjson/include/rapidjson/reader.h +683 -0
  60. cunibs-0.1.0/external/AMGX/external/rapidjson/include/rapidjson/stringbuffer.h +49 -0
  61. cunibs-0.1.0/external/AMGX/external/rapidjson/include/rapidjson/writer.h +241 -0
  62. cunibs-0.1.0/external/AMGX/external/rapidjson/license.txt +19 -0
  63. cunibs-0.1.0/external/AMGX/external/rapidjson/readme.txt +33 -0
  64. cunibs-0.1.0/external/AMGX/include/aggregation/aggregation_amg_level.h +228 -0
  65. cunibs-0.1.0/external/AMGX/include/aggregation/coarseAgenerators/coarse_A_generator.h +78 -0
  66. cunibs-0.1.0/external/AMGX/include/aggregation/coarseAgenerators/hybrid_coarse_A_generator.h +72 -0
  67. cunibs-0.1.0/external/AMGX/include/aggregation/coarseAgenerators/low_deg_coarse_A_generator.h +99 -0
  68. cunibs-0.1.0/external/AMGX/include/aggregation/coarseAgenerators/serial_coarse_A_generator.h +77 -0
  69. cunibs-0.1.0/external/AMGX/include/aggregation/coarseAgenerators/thrust_coarse_A_generator.h +75 -0
  70. cunibs-0.1.0/external/AMGX/include/aggregation/selectors/adaptive.h +99 -0
  71. cunibs-0.1.0/external/AMGX/include/aggregation/selectors/agg_selector.h +81 -0
  72. cunibs-0.1.0/external/AMGX/include/aggregation/selectors/common_selector.h +541 -0
  73. cunibs-0.1.0/external/AMGX/include/aggregation/selectors/dummy.h +44 -0
  74. cunibs-0.1.0/external/AMGX/include/aggregation/selectors/geo_selector.h +115 -0
  75. cunibs-0.1.0/external/AMGX/include/aggregation/selectors/multi_pairwise.h +155 -0
  76. cunibs-0.1.0/external/AMGX/include/aggregation/selectors/parallel_greedy_selector.h +110 -0
  77. cunibs-0.1.0/external/AMGX/include/aggregation/selectors/serial_bfs_selector.h +45 -0
  78. cunibs-0.1.0/external/AMGX/include/aggregation/selectors/serial_greedy.h +45 -0
  79. cunibs-0.1.0/external/AMGX/include/aggregation/selectors/size2_selector.h +94 -0
  80. cunibs-0.1.0/external/AMGX/include/aggregation/selectors/size4_selector.h +85 -0
  81. cunibs-0.1.0/external/AMGX/include/aggregation/selectors/size8_selector.h +100 -0
  82. cunibs-0.1.0/external/AMGX/include/amg.h +189 -0
  83. cunibs-0.1.0/external/AMGX/include/amg_config.h +346 -0
  84. cunibs-0.1.0/external/AMGX/include/amg_eigensolver.h +136 -0
  85. cunibs-0.1.0/external/AMGX/include/amg_level.h +359 -0
  86. cunibs-0.1.0/external/AMGX/include/amg_signal.h +18 -0
  87. cunibs-0.1.0/external/AMGX/include/amg_solver.h +144 -0
  88. cunibs-0.1.0/external/AMGX/include/amgxP_c.h +90 -0
  89. cunibs-0.1.0/external/AMGX/include/amgx_c.h +611 -0
  90. cunibs-0.1.0/external/AMGX/include/amgx_c_common.h +123 -0
  91. cunibs-0.1.0/external/AMGX/include/amgx_c_wrappers.inl +1105 -0
  92. cunibs-0.1.0/external/AMGX/include/amgx_config.h +192 -0
  93. cunibs-0.1.0/external/AMGX/include/amgx_cublas.h +131 -0
  94. cunibs-0.1.0/external/AMGX/include/amgx_cusolverDn.h +133 -0
  95. cunibs-0.1.0/external/AMGX/include/amgx_cusparse.h +463 -0
  96. cunibs-0.1.0/external/AMGX/include/amgx_eig_c.h +30 -0
  97. cunibs-0.1.0/external/AMGX/include/amgx_lapack.h +80 -0
  98. cunibs-0.1.0/external/AMGX/include/amgx_timer.h +518 -0
  99. cunibs-0.1.0/external/AMGX/include/amgx_types/io.h +11 -0
  100. cunibs-0.1.0/external/AMGX/include/amgx_types/math.h +160 -0
  101. cunibs-0.1.0/external/AMGX/include/amgx_types/pod_types.h +59 -0
  102. cunibs-0.1.0/external/AMGX/include/amgx_types/rand.h +43 -0
  103. cunibs-0.1.0/external/AMGX/include/amgx_types/util.h +338 -0
  104. cunibs-0.1.0/external/AMGX/include/async_event.h +35 -0
  105. cunibs-0.1.0/external/AMGX/include/auxdata.h +269 -0
  106. cunibs-0.1.0/external/AMGX/include/basic_types.h +166 -0
  107. cunibs-0.1.0/external/AMGX/include/blas.h +87 -0
  108. cunibs-0.1.0/external/AMGX/include/block_dia_csr_matrix.h +196 -0
  109. cunibs-0.1.0/external/AMGX/include/block_dia_csr_matrix.inl +165 -0
  110. cunibs-0.1.0/external/AMGX/include/classical/classical_amg_level.h +183 -0
  111. cunibs-0.1.0/external/AMGX/include/classical/interpolators/common.h +48 -0
  112. cunibs-0.1.0/external/AMGX/include/classical/interpolators/distance1.h +91 -0
  113. cunibs-0.1.0/external/AMGX/include/classical/interpolators/distance2.h +187 -0
  114. cunibs-0.1.0/external/AMGX/include/classical/interpolators/interpolator.h +70 -0
  115. cunibs-0.1.0/external/AMGX/include/classical/interpolators/multipass.h +136 -0
  116. cunibs-0.1.0/external/AMGX/include/classical/selectors/aggressive_hmis.h +111 -0
  117. cunibs-0.1.0/external/AMGX/include/classical/selectors/aggressive_pmis.h +112 -0
  118. cunibs-0.1.0/external/AMGX/include/classical/selectors/cr.h +121 -0
  119. cunibs-0.1.0/external/AMGX/include/classical/selectors/dummy_selector.h +120 -0
  120. cunibs-0.1.0/external/AMGX/include/classical/selectors/hmis.h +122 -0
  121. cunibs-0.1.0/external/AMGX/include/classical/selectors/pmis.h +116 -0
  122. cunibs-0.1.0/external/AMGX/include/classical/selectors/rs.h +123 -0
  123. cunibs-0.1.0/external/AMGX/include/classical/selectors/selector.h +224 -0
  124. cunibs-0.1.0/external/AMGX/include/classical/strength/affinity.h +108 -0
  125. cunibs-0.1.0/external/AMGX/include/classical/strength/ahat.h +37 -0
  126. cunibs-0.1.0/external/AMGX/include/classical/strength/all.h +34 -0
  127. cunibs-0.1.0/external/AMGX/include/classical/strength/strength.h +70 -0
  128. cunibs-0.1.0/external/AMGX/include/classical/strength/strength_base.h +101 -0
  129. cunibs-0.1.0/external/AMGX/include/convergence/absolute.h +41 -0
  130. cunibs-0.1.0/external/AMGX/include/convergence/combined_rel_ini_abs.h +44 -0
  131. cunibs-0.1.0/external/AMGX/include/convergence/convergence.h +139 -0
  132. cunibs-0.1.0/external/AMGX/include/convergence/relative_ini.h +41 -0
  133. cunibs-0.1.0/external/AMGX/include/convergence/relative_max.h +45 -0
  134. cunibs-0.1.0/external/AMGX/include/core.h +22 -0
  135. cunibs-0.1.0/external/AMGX/include/csr_multiply.h +190 -0
  136. cunibs-0.1.0/external/AMGX/include/csr_multiply_detail.h +62 -0
  137. cunibs-0.1.0/external/AMGX/include/cusp/CHANGELOG +161 -0
  138. cunibs-0.1.0/external/AMGX/include/cusp/LICENSE +178 -0
  139. cunibs-0.1.0/external/AMGX/include/cusp/README +53 -0
  140. cunibs-0.1.0/external/AMGX/include/cusp/array1d.h +263 -0
  141. cunibs-0.1.0/external/AMGX/include/cusp/array2d.h +440 -0
  142. cunibs-0.1.0/external/AMGX/include/cusp/blas.h +322 -0
  143. cunibs-0.1.0/external/AMGX/include/cusp/cmath.h +104 -0
  144. cunibs-0.1.0/external/AMGX/include/cusp/complex.h +1026 -0
  145. cunibs-0.1.0/external/AMGX/include/cusp/convert.h +36 -0
  146. cunibs-0.1.0/external/AMGX/include/cusp/coo_matrix.h +357 -0
  147. cunibs-0.1.0/external/AMGX/include/cusp/copy.h +37 -0
  148. cunibs-0.1.0/external/AMGX/include/cusp/csr_matrix.h +323 -0
  149. cunibs-0.1.0/external/AMGX/include/cusp/detail/array1d.inl +155 -0
  150. cunibs-0.1.0/external/AMGX/include/cusp/detail/array2d.inl +142 -0
  151. cunibs-0.1.0/external/AMGX/include/cusp/detail/blas.inl +784 -0
  152. cunibs-0.1.0/external/AMGX/include/cusp/detail/config.h +42 -0
  153. cunibs-0.1.0/external/AMGX/include/cusp/detail/convert.inl +50 -0
  154. cunibs-0.1.0/external/AMGX/include/cusp/detail/coo_matrix.inl +125 -0
  155. cunibs-0.1.0/external/AMGX/include/cusp/detail/copy.inl +159 -0
  156. cunibs-0.1.0/external/AMGX/include/cusp/detail/csr_matrix.inl +40 -0
  157. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/arch.h +45 -0
  158. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/common.h +10 -0
  159. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/conversion.h +834 -0
  160. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/conversion_utils.h +250 -0
  161. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/convert.h +342 -0
  162. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/dereference.h +17 -0
  163. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/detail/coo.h +114 -0
  164. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/elementwise.h +42 -0
  165. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/elementwise.inl +195 -0
  166. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/generalized_spmv/coo.h +35 -0
  167. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/generalized_spmv/coo_flat.h +516 -0
  168. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/generalized_spmv/coo_serial.h +53 -0
  169. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/generalized_spmv/csr.h +36 -0
  170. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/generalized_spmv/csr_scalar.h +108 -0
  171. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/generalized_spmv/csr_vector.h +151 -0
  172. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/generalized_spmv/dia.h +168 -0
  173. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/generalized_spmv/ell.h +137 -0
  174. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/generalized_spmv/hyb.h +58 -0
  175. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/multiply.h +218 -0
  176. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/spmm/coo.h +297 -0
  177. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/spmv/coo_flat.h +371 -0
  178. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/spmv/coo_flat_k.h +285 -0
  179. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/spmv/coo_serial.h +56 -0
  180. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/spmv/csr_scalar.h +110 -0
  181. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/spmv/csr_vector.h +181 -0
  182. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/spmv/dia.h +159 -0
  183. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/spmv/ell.h +118 -0
  184. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/spmv/hyb.h +40 -0
  185. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/texture.h +156 -0
  186. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/transpose.h +70 -0
  187. cunibs-0.1.0/external/AMGX/include/cusp/detail/device/utils.h +64 -0
  188. cunibs-0.1.0/external/AMGX/include/cusp/detail/dia_matrix.inl +90 -0
  189. cunibs-0.1.0/external/AMGX/include/cusp/detail/dispatch/convert.h +71 -0
  190. cunibs-0.1.0/external/AMGX/include/cusp/detail/dispatch/elementwise.h +112 -0
  191. cunibs-0.1.0/external/AMGX/include/cusp/detail/dispatch/multiply.h +52 -0
  192. cunibs-0.1.0/external/AMGX/include/cusp/detail/dispatch/transpose.h +42 -0
  193. cunibs-0.1.0/external/AMGX/include/cusp/detail/elementwise.inl +65 -0
  194. cunibs-0.1.0/external/AMGX/include/cusp/detail/ell_matrix.inl +90 -0
  195. cunibs-0.1.0/external/AMGX/include/cusp/detail/format_utils.h +31 -0
  196. cunibs-0.1.0/external/AMGX/include/cusp/detail/format_utils.inl +292 -0
  197. cunibs-0.1.0/external/AMGX/include/cusp/detail/forward_definitions.h +19 -0
  198. cunibs-0.1.0/external/AMGX/include/cusp/detail/functional.h +35 -0
  199. cunibs-0.1.0/external/AMGX/include/cusp/detail/host/conversion.h +608 -0
  200. cunibs-0.1.0/external/AMGX/include/cusp/detail/host/conversion_utils.h +129 -0
  201. cunibs-0.1.0/external/AMGX/include/cusp/detail/host/convert.h +307 -0
  202. cunibs-0.1.0/external/AMGX/include/cusp/detail/host/detail/coo.h +63 -0
  203. cunibs-0.1.0/external/AMGX/include/cusp/detail/host/detail/csr.h +246 -0
  204. cunibs-0.1.0/external/AMGX/include/cusp/detail/host/elementwise.h +28 -0
  205. cunibs-0.1.0/external/AMGX/include/cusp/detail/host/elementwise.inl +140 -0
  206. cunibs-0.1.0/external/AMGX/include/cusp/detail/host/multiply.h +240 -0
  207. cunibs-0.1.0/external/AMGX/include/cusp/detail/host/reference/bsr.h +751 -0
  208. cunibs-0.1.0/external/AMGX/include/cusp/detail/host/reference/complex_ops.h +102 -0
  209. cunibs-0.1.0/external/AMGX/include/cusp/detail/host/reference/coo.h +179 -0
  210. cunibs-0.1.0/external/AMGX/include/cusp/detail/host/reference/csc.h +187 -0
  211. cunibs-0.1.0/external/AMGX/include/cusp/detail/host/reference/csr.h +1189 -0
  212. cunibs-0.1.0/external/AMGX/include/cusp/detail/host/reference/dense.h +87 -0
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  633. cunibs-0.1.0/external/AMGX/src/solvers/fgmres_solver.cu +585 -0
  634. cunibs-0.1.0/external/AMGX/src/solvers/fixcolor_gauss_seidel_solver.cu +1021 -0
  635. cunibs-0.1.0/external/AMGX/src/solvers/gauss_seidel_solver.cu +269 -0
  636. cunibs-0.1.0/external/AMGX/src/solvers/gmres_solver.cu +407 -0
  637. cunibs-0.1.0/external/AMGX/src/solvers/idr_solver.cu +585 -0
  638. cunibs-0.1.0/external/AMGX/src/solvers/idrmsync_solver.cu +685 -0
  639. cunibs-0.1.0/external/AMGX/src/solvers/jacobi_l1_solver.cu +601 -0
  640. cunibs-0.1.0/external/AMGX/src/solvers/kaczmarz_solver.cu +843 -0
  641. cunibs-0.1.0/external/AMGX/src/solvers/kpz_polynomial_solver.cu +227 -0
  642. cunibs-0.1.0/external/AMGX/src/solvers/multicolor_dilu_solver.cu +4259 -0
  643. cunibs-0.1.0/external/AMGX/src/solvers/multicolor_gauss_seidel_solver.cu +1581 -0
  644. cunibs-0.1.0/external/AMGX/src/solvers/multicolor_ilu_solver.cu +2222 -0
  645. cunibs-0.1.0/external/AMGX/src/solvers/pbicgstab_solver.cu +277 -0
  646. cunibs-0.1.0/external/AMGX/src/solvers/pcg_solver.cu +216 -0
  647. cunibs-0.1.0/external/AMGX/src/solvers/pcgf_solver.cu +199 -0
  648. cunibs-0.1.0/external/AMGX/src/solvers/polynomial_solver.cu +351 -0
  649. cunibs-0.1.0/external/AMGX/src/solvers/solver.cu +1158 -0
  650. cunibs-0.1.0/external/AMGX/src/solvers/user_solver.cu +34 -0
  651. cunibs-0.1.0/external/AMGX/src/sort.cu +51 -0
  652. cunibs-0.1.0/external/AMGX/src/test_utils.cu +93 -0
  653. cunibs-0.1.0/external/AMGX/src/testframework.cu +608 -0
  654. cunibs-0.1.0/external/AMGX/src/tests/IDR_Convergence_Poisson.cu +167 -0
  655. cunibs-0.1.0/external/AMGX/src/tests/IDRmsync_Convergence_Poisson.cu +184 -0
  656. cunibs-0.1.0/external/AMGX/src/tests/aggregates_coarse_generator.cu +331 -0
  657. cunibs-0.1.0/external/AMGX/src/tests/aggregates_coarsening_factor.cu +108 -0
  658. cunibs-0.1.0/external/AMGX/src/tests/aggregates_determinism_test.cu +95 -0
  659. cunibs-0.1.0/external/AMGX/src/tests/aggregates_diagonal_outside_test.cu +95 -0
  660. cunibs-0.1.0/external/AMGX/src/tests/amg_levels_reuse.cu +392 -0
  661. cunibs-0.1.0/external/AMGX/src/tests/block_conversion.cu +60 -0
  662. cunibs-0.1.0/external/AMGX/src/tests/capi_graceful_failure.cu +145 -0
  663. cunibs-0.1.0/external/AMGX/src/tests/capi_upload_tests.cu +257 -0
  664. cunibs-0.1.0/external/AMGX/src/tests/classical_pmis.cu +185 -0
  665. cunibs-0.1.0/external/AMGX/src/tests/classical_strength.cu +69 -0
  666. cunibs-0.1.0/external/AMGX/src/tests/classical_strength_affinity.cu +70 -0
  667. cunibs-0.1.0/external/AMGX/src/tests/config_parsing.cu +84 -0
  668. cunibs-0.1.0/external/AMGX/src/tests/csr_multiply.cu +374 -0
  669. cunibs-0.1.0/external/AMGX/src/tests/csr_sparsity.cu +399 -0
  670. cunibs-0.1.0/external/AMGX/src/tests/csr_sparsity_ilu1.cu +331 -0
  671. cunibs-0.1.0/external/AMGX/src/tests/custom_memory_use.cu +466 -0
  672. cunibs-0.1.0/external/AMGX/src/tests/dense_lu.cu +352 -0
  673. cunibs-0.1.0/external/AMGX/src/tests/eigensolver_test.cu +206 -0
  674. cunibs-0.1.0/external/AMGX/src/tests/energymin_algorithm.cu +531 -0
  675. cunibs-0.1.0/external/AMGX/src/tests/factories.cu +262 -0
  676. cunibs-0.1.0/external/AMGX/src/tests/fgmres_convergence_poisson.cu +160 -0
  677. cunibs-0.1.0/external/AMGX/src/tests/fgmres_zero_initial_residual.cu +140 -0
  678. cunibs-0.1.0/external/AMGX/src/tests/generated_matrix_distributed_io.cu +121 -0
  679. cunibs-0.1.0/external/AMGX/src/tests/generated_matrix_io.cu +104 -0
  680. cunibs-0.1.0/external/AMGX/src/tests/generic_spmv.cu +180 -0
  681. cunibs-0.1.0/external/AMGX/src/tests/ilu1_coloringA.cu +99 -0
  682. cunibs-0.1.0/external/AMGX/src/tests/ilu1_in_vs_out_diag.cu +94 -0
  683. cunibs-0.1.0/external/AMGX/src/tests/ilu_dilu_equivalence.cu +80 -0
  684. cunibs-0.1.0/external/AMGX/src/tests/large_matrices_support.cu +509 -0
  685. cunibs-0.1.0/external/AMGX/src/tests/low_deg_determinism.cu +120 -0
  686. cunibs-0.1.0/external/AMGX/src/tests/matrix_coloring_test.cu +570 -0
  687. cunibs-0.1.0/external/AMGX/src/tests/matrix_tests.cu +168 -0
  688. cunibs-0.1.0/external/AMGX/src/tests/matrix_vector_multiply_tests.cu +248 -0
  689. cunibs-0.1.0/external/AMGX/src/tests/memory_use.cu +587 -0
  690. cunibs-0.1.0/external/AMGX/src/tests/multi_pairwise_test.cu +186 -0
  691. cunibs-0.1.0/external/AMGX/src/tests/nested_amg_equivalence.cu +153 -0
  692. cunibs-0.1.0/external/AMGX/src/tests/nested_solvers.cu +121 -0
  693. cunibs-0.1.0/external/AMGX/src/tests/norm_tests.cu +94 -0
  694. cunibs-0.1.0/external/AMGX/src/tests/object_destruction.cu +65 -0
  695. cunibs-0.1.0/external/AMGX/src/tests/permute_tests.cu +101 -0
  696. cunibs-0.1.0/external/AMGX/src/tests/preconditioner_usage.cu +244 -0
  697. cunibs-0.1.0/external/AMGX/src/tests/profile_test.cu +365 -0
  698. cunibs-0.1.0/external/AMGX/src/tests/random_matrix_generation.cu +85 -0
  699. cunibs-0.1.0/external/AMGX/src/tests/row_maj_vs_col_maj.cu +315 -0
  700. cunibs-0.1.0/external/AMGX/src/tests/scalar_smoother_poisson.cu +207 -0
  701. cunibs-0.1.0/external/AMGX/src/tests/smoother_block_poisson.cu +163 -0
  702. cunibs-0.1.0/external/AMGX/src/tests/smoother_blocksizes.cu +206 -0
  703. cunibs-0.1.0/external/AMGX/src/tests/smoother_cusparse.cu +95 -0
  704. cunibs-0.1.0/external/AMGX/src/tests/smoother_nan_random.cu +75 -0
  705. cunibs-0.1.0/external/AMGX/src/tests/template_config.cu +32 -0
  706. cunibs-0.1.0/external/AMGX/src/tests/template_test.cu +137 -0
  707. cunibs-0.1.0/external/AMGX/src/tests/truncate_count_test.cu +44 -0
  708. cunibs-0.1.0/external/AMGX/src/tests/valid_coloring.cu +145 -0
  709. cunibs-0.1.0/external/AMGX/src/tests/vector_tests.cu +152 -0
  710. cunibs-0.1.0/external/AMGX/src/tests/version_test.cu +41 -0
  711. cunibs-0.1.0/external/AMGX/src/tests/zero_in_diagonal_handling.cu +672 -0
  712. cunibs-0.1.0/external/AMGX/src/tests/zero_off_diagonal_handling.cu +517 -0
  713. cunibs-0.1.0/external/AMGX/src/tests/zero_values_handling.cu +588 -0
  714. cunibs-0.1.0/external/AMGX/src/thread_manager.cu +71 -0
  715. cunibs-0.1.0/external/AMGX/src/transpose.cu +156 -0
  716. cunibs-0.1.0/external/AMGX/src/truncate.cu +882 -0
  717. cunibs-0.1.0/external/AMGX/src/unit_test.cu +188 -0
  718. cunibs-0.1.0/external/AMGX/src/utest.cu +294 -0
  719. cunibs-0.1.0/external/AMGX/src/version.cu +6 -0
  720. cunibs-0.1.0/pyproject.toml +54 -0
  721. cunibs-0.1.0/src/cunibs/__init__.py +18 -0
  722. cunibs-0.1.0/src/cunibs/coil.py +94 -0
  723. cunibs-0.1.0/src/cunibs/coils/Deymed_120BFV.h5 +0 -0
  724. cunibs-0.1.0/src/cunibs/coils/Deymed_50BF.h5 +0 -0
  725. cunibs-0.1.0/src/cunibs/coils/Deymed_70BF.h5 +0 -0
  726. cunibs-0.1.0/src/cunibs/coils/MagMore_PMD25-decentral.h5 +0 -0
  727. cunibs-0.1.0/src/cunibs/coils/MagMore_PMD45-EEG.h5 +0 -0
  728. cunibs-0.1.0/src/cunibs/coils/MagMore_PMD70.h5 +0 -0
  729. cunibs-0.1.0/src/cunibs/coils/MagStim_D70.h5 +0 -0
  730. cunibs-0.1.0/src/cunibs/coils/MagStim_DCC.h5 +0 -0
  731. cunibs-0.1.0/src/cunibs/coils/MagVenture_C-100.h5 +0 -0
  732. cunibs-0.1.0/src/cunibs/coils/MagVenture_C-B60.h5 +0 -0
  733. cunibs-0.1.0/src/cunibs/coils/MagVenture_C-B70.h5 +0 -0
  734. cunibs-0.1.0/src/cunibs/coils/MagVenture_Cool-B35.h5 +0 -0
  735. cunibs-0.1.0/src/cunibs/coils/MagVenture_Cool-B65.h5 +0 -0
  736. cunibs-0.1.0/src/cunibs/coils/MagVenture_Cool-B70.h5 +0 -0
  737. cunibs-0.1.0/src/cunibs/coils/MagVenture_Cool-D-B80.h5 +0 -0
  738. cunibs-0.1.0/src/cunibs/coils/MagVenture_MC-125.h5 +0 -0
  739. cunibs-0.1.0/src/cunibs/coils/MagVenture_MC-125_new.h5 +0 -0
  740. cunibs-0.1.0/src/cunibs/coils/MagVenture_MC-B70.h5 +0 -0
  741. cunibs-0.1.0/src/cunibs/coils/MagVenture_MCF-75.h5 +0 -0
  742. cunibs-0.1.0/src/cunibs/coils/MagVenture_MCF-B65.h5 +0 -0
  743. cunibs-0.1.0/src/cunibs/coils/MagVenture_MCF-B65_new.h5 +0 -0
  744. cunibs-0.1.0/src/cunibs/coils/MagVenture_MC_B65_HO8.h5 +0 -0
  745. cunibs-0.1.0/src/cunibs/coils/MagVenture_MMC-140-II.h5 +0 -0
  746. cunibs-0.1.0/src/cunibs/coils/MagVenture_MRI-B91.h5 +0 -0
  747. cunibs-0.1.0/src/cunibs/coils/MagVenture_MST_Twin.h5 +0 -0
  748. cunibs-0.1.0/src/cunibs/fem/__init__.py +49 -0
  749. cunibs-0.1.0/src/cunibs/fem/assembly.py +111 -0
  750. cunibs-0.1.0/src/cunibs/fem/placement.py +147 -0
  751. cunibs-0.1.0/src/cunibs/fem/solve.py +244 -0
  752. cunibs-0.1.0/src/cunibs/mesh.py +203 -0
  753. cunibs-0.1.0/src/cunibs/metrics.py +133 -0
  754. cunibs-0.1.0/src/cunibs/py.typed +0 -0
  755. cunibs-0.1.0/src/cunibs/simulation.py +221 -0
  756. cunibs-0.1.0/src/cunibs/solver/__init__.py +8 -0
  757. cunibs-0.1.0/src/cunibs/solver/bindings.cpp +79 -0
  758. cunibs-0.1.0/src/cunibs/solver/dadt.cu +114 -0
  759. cunibs-0.1.0/src/cunibs/solver/kernels.hpp +12 -0
  760. cunibs-0.1.0/src/cunibs/solver/reconstruct.cu +49 -0
  761. cunibs-0.1.0/src/cunibs/solver/rhs.cu +39 -0
  762. cunibs-0.1.0/src/cunibs/solver/solver.cpp +69 -0
  763. cunibs-0.1.0/src/cunibs/solver/solver.hpp +25 -0
  764. cunibs-0.1.0/tests/conftest.py +105 -0
  765. cunibs-0.1.0/tests/gpu.py +17 -0
  766. cunibs-0.1.0/tests/test_coil.py +45 -0
  767. cunibs-0.1.0/tests/test_frontend.py +52 -0
  768. cunibs-0.1.0/tests/test_mesh.py +52 -0
  769. cunibs-0.1.0/tests/test_metrics.py +50 -0
  770. cunibs-0.1.0/tests/test_serialization.py +52 -0
  771. cunibs-0.1.0/tests/test_solver.py +93 -0
  772. cunibs-0.1.0/uv.lock +313 -0
@@ -0,0 +1,84 @@
1
+ name: Build wheels
2
+
3
+ on:
4
+ push:
5
+ tags:
6
+ - "v*"
7
+
8
+ permissions:
9
+ contents: read
10
+
11
+ jobs:
12
+ build-wheels:
13
+ name: Build ${{ matrix.python }} wheel
14
+ runs-on: ubuntu-24.04
15
+ strategy:
16
+ matrix:
17
+ python:
18
+ - cp312
19
+ - cp313
20
+ - cp314
21
+ - cp314t
22
+
23
+ steps:
24
+ - uses: actions/checkout@v7.0.0
25
+ with:
26
+ persist-credentials: false
27
+ submodules: recursive
28
+
29
+ - uses: pypa/cibuildwheel@v4.1.0
30
+ env:
31
+ CIBW_ARCHS_LINUX: x86_64
32
+ CIBW_BUILD: ${{ matrix.python }}-manylinux_x86_64
33
+ CIBW_ENVIRONMENT_LINUX: >-
34
+ CMAKE_ARGS="-DCMAKE_CUDA_ARCHITECTURES=75;80;86;89;90;100;120"
35
+ CIBW_REPAIR_WHEEL_COMMAND_LINUX: >-
36
+ auditwheel repair -w {dest_dir}
37
+ --exclude 'libcudart.so.*'
38
+ --exclude 'libcublas.so.*'
39
+ --exclude 'libcusparse.so.*'
40
+ --exclude 'libcusolver.so.*'
41
+ {wheel}
42
+
43
+ - uses: actions/upload-artifact@v7.0.1
44
+ with:
45
+ name: wheels-${{ matrix.python }}-manylinux-x86_64
46
+ path: wheelhouse/*.whl
47
+ if-no-files-found: error
48
+
49
+ build-sdist:
50
+ name: Build sdist
51
+ runs-on: ubuntu-24.04
52
+ steps:
53
+ - uses: actions/checkout@v7.0.0
54
+ with:
55
+ persist-credentials: false
56
+ submodules: recursive
57
+
58
+ - uses: astral-sh/setup-uv@v8.2.0
59
+ - run: uv build --sdist
60
+
61
+ - uses: actions/upload-artifact@v7.0.1
62
+ with:
63
+ name: wheels-sdist
64
+ path: dist/*.tar.gz
65
+ if-no-files-found: error
66
+
67
+ publish:
68
+ name: Publish to PyPI
69
+ needs: [build-wheels, build-sdist]
70
+ runs-on: ubuntu-24.04
71
+ if: startsWith(github.ref, 'refs/tags/')
72
+ environment:
73
+ name: pypi
74
+ url: https://pypi.org/p/cunibs
75
+ permissions:
76
+ id-token: write
77
+ steps:
78
+ - uses: actions/download-artifact@v8.0.1
79
+ with:
80
+ pattern: wheels-*
81
+ path: dist
82
+ merge-multiple: true
83
+
84
+ - uses: pypa/gh-action-pypi-publish@release/v1
@@ -0,0 +1,15 @@
1
+ # Python-generated files
2
+ __pycache__/
3
+ *.py[oc]
4
+ build/
5
+ dist/
6
+ wheels/
7
+ *.egg-info
8
+
9
+ # Virtual environments
10
+ .venv
11
+ .python-version
12
+
13
+ # Tooling
14
+ .pytest_cache
15
+ .ruff_cache
@@ -0,0 +1,3 @@
1
+ [submodule "external/AMGX"]
2
+ path = external/AMGX
3
+ url = https://github.com/srimanachanta/AMGX
@@ -0,0 +1,99 @@
1
+ cmake_minimum_required(VERSION 3.21)
2
+
3
+ find_package(Python 3.12 COMPONENTS Interpreter Development.Module REQUIRED)
4
+
5
+ execute_process(
6
+ COMMAND "${Python_EXECUTABLE}" -c "import nvidia.cu13 as m, os; print(os.path.join(m.__path__[0], 'bin', 'nvcc'))"
7
+ OUTPUT_STRIP_TRAILING_WHITESPACE OUTPUT_VARIABLE CMAKE_CUDA_COMPILER
8
+ )
9
+
10
+ if(NOT DEFINED CMAKE_CUDA_ARCHITECTURES)
11
+ set(CMAKE_CUDA_ARCHITECTURES native)
12
+ endif()
13
+
14
+ project(${SKBUILD_PROJECT_NAME} LANGUAGES CXX CUDA)
15
+
16
+ get_filename_component(_CUDA_BIN_DIR "${CMAKE_CUDA_COMPILER}" DIRECTORY)
17
+ set(_CUDA_LIB_DIR "${_CUDA_BIN_DIR}/../lib")
18
+ set(_CUDA_SHIM_LIBS cudart cublas cusparse cusolver)
19
+ foreach(_lib ${_CUDA_SHIM_LIBS})
20
+ if(EXISTS "${_CUDA_LIB_DIR}" AND NOT EXISTS "${_CUDA_LIB_DIR}/lib${_lib}.so")
21
+ file(GLOB _versioned "${_CUDA_LIB_DIR}/lib${_lib}.so.[0-9]*")
22
+ list(LENGTH _versioned _count)
23
+ if(_count GREATER 0)
24
+ list(GET _versioned 0 _first)
25
+ file(CREATE_LINK "${_first}" "${_CUDA_LIB_DIR}/lib${_lib}.so" SYMBOLIC)
26
+ endif()
27
+ endif()
28
+ endforeach()
29
+
30
+ find_package(CUDAToolkit 13.2 REQUIRED)
31
+
32
+ set(CMAKE_CXX_STANDARD 20)
33
+ set(CMAKE_CXX_STANDARD_REQUIRED ON)
34
+ set(CMAKE_CUDA_STANDARD 20)
35
+ set(CMAKE_CUDA_STANDARD_REQUIRED ON)
36
+ set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
37
+
38
+ if(NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
39
+ set(CMAKE_BUILD_TYPE "Release" CACHE STRING "Default build type" FORCE)
40
+ endif()
41
+
42
+ set(AMGX_BUILD_TESTS OFF CACHE BOOL "" FORCE)
43
+ set(AMGX_BUILD_EXAMPLES OFF CACHE BOOL "" FORCE)
44
+ set(AMGX_BUILD_STATIC OFF CACHE BOOL "" FORCE)
45
+ set(AMGX_BUILD_SHARED ON CACHE BOOL "" FORCE)
46
+ set(AMGX_INSTALL OFF CACHE BOOL "" FORCE)
47
+ set(CMAKE_NO_MPI ON CACHE BOOL "" FORCE)
48
+ set(AMGX_BUILD_DEVICE_MODE AMGX_mode_dDDI CACHE STRING "" FORCE)
49
+ set(AMGX_BUILD_HOST_MODE AMGX_mode_hDDI CACHE STRING "" FORCE)
50
+ set(AMGX_ENABLE_COMPLEX OFF CACHE BOOL "" FORCE)
51
+ set(AMGX_ENABLE_MIXED_PRECISION OFF CACHE BOOL "" FORCE)
52
+ set(AMGX_MINIMAL_SOLVERS ON CACHE BOOL "" FORCE)
53
+
54
+ add_subdirectory(external/AMGX)
55
+
56
+ target_compile_options(amgx_libs PRIVATE
57
+ $<$<COMPILE_LANGUAGE:CUDA>:-Xcompiler=-Wno-deprecated-declarations>
58
+ $<$<COMPILE_LANGUAGE:CXX>:-Wno-deprecated-declarations>)
59
+
60
+ execute_process(
61
+ COMMAND "${Python_EXECUTABLE}" -m nanobind --cmake_dir
62
+ OUTPUT_STRIP_TRAILING_WHITESPACE OUTPUT_VARIABLE nanobind_ROOT)
63
+ find_package(nanobind CONFIG REQUIRED)
64
+
65
+ nanobind_add_module(_solver_ext LTO FREE_THREADED
66
+ src/cunibs/solver/bindings.cpp
67
+ src/cunibs/solver/solver.cpp
68
+ src/cunibs/solver/dadt.cu
69
+ src/cunibs/solver/rhs.cu
70
+ src/cunibs/solver/reconstruct.cu
71
+ )
72
+ target_link_libraries(_solver_ext PRIVATE CUDA::cudart AMGX::amgxsh)
73
+
74
+ set_target_properties(_solver_ext amgxsh PROPERTIES
75
+ INSTALL_RPATH "$ORIGIN;$ORIGIN/../../nvidia/cu13/lib"
76
+ )
77
+
78
+ get_target_property(_amgxsh_soversion amgxsh SOVERSION)
79
+ set_target_properties(amgxsh PROPERTIES VERSION ${_amgxsh_soversion})
80
+
81
+ install(TARGETS _solver_ext amgxsh
82
+ LIBRARY DESTINATION cunibs/solver
83
+ NAMELINK_SKIP
84
+ )
85
+
86
+ nanobind_add_stub(
87
+ _solver_ext_stub
88
+ MODULE _solver_ext
89
+ OUTPUT solver/_solver_ext.pyi
90
+ PYTHON_PATH $<TARGET_FILE_DIR:_solver_ext>
91
+ DEPENDS _solver_ext
92
+ MARKER_FILE solver/py.typed
93
+ )
94
+
95
+ install(FILES
96
+ ${CMAKE_CURRENT_BINARY_DIR}/solver/_solver_ext.pyi
97
+ ${CMAKE_CURRENT_BINARY_DIR}/solver/py.typed
98
+ DESTINATION cunibs/solver
99
+ )