ct-toolkit 0.2.0__tar.gz → 0.2.1__tar.gz

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Files changed (40) hide show
  1. ct_toolkit-0.2.1/PKG-INFO +119 -0
  2. ct_toolkit-0.2.1/README.md +82 -0
  3. ct_toolkit-0.2.1/ct_toolkit/divergence/analysis.py +149 -0
  4. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/divergence/engine.py +22 -0
  5. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/divergence/l3_icm.py +44 -5
  6. ct_toolkit-0.2.1/ct_toolkit.egg-info/PKG-INFO +119 -0
  7. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit.egg-info/SOURCES.txt +3 -1
  8. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/pyproject.toml +1 -1
  9. ct_toolkit-0.2.1/tests/test_analysis.py +69 -0
  10. ct_toolkit-0.2.0/PKG-INFO +0 -367
  11. ct_toolkit-0.2.0/README.md +0 -330
  12. ct_toolkit-0.2.0/ct_toolkit.egg-info/PKG-INFO +0 -367
  13. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/LICENSE +0 -0
  14. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/__init__.py +0 -0
  15. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/core/__init__.py +0 -0
  16. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/core/compatibility.py +0 -0
  17. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/core/exceptions.py +0 -0
  18. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/core/kernel.py +0 -0
  19. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/core/wrapper.py +0 -0
  20. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/divergence/__init__.py +0 -0
  21. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/divergence/l2_judge.py +0 -0
  22. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/divergence/scheduler.py +0 -0
  23. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/endorsement/__init__.py +0 -0
  24. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/endorsement/probes/__init__.py +0 -0
  25. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/endorsement/reflective.py +0 -0
  26. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/identity/__init__.py +0 -0
  27. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/identity/embedding.py +0 -0
  28. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/middleware/__init__.py +0 -0
  29. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/middleware/autogen.py +0 -0
  30. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/middleware/crewai.py +0 -0
  31. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/middleware/langchain.py +0 -0
  32. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/provenance/__init__.py +0 -0
  33. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/provenance/log.py +0 -0
  34. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/provenance/vault/__init__.py +0 -0
  35. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/utils/__init__.py +0 -0
  36. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit/utils/logger.py +0 -0
  37. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit.egg-info/dependency_links.txt +0 -0
  38. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit.egg-info/requires.txt +0 -0
  39. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/ct_toolkit.egg-info/top_level.txt +0 -0
  40. {ct_toolkit-0.2.0 → ct_toolkit-0.2.1}/setup.cfg +0 -0
@@ -0,0 +1,119 @@
1
+ Metadata-Version: 2.4
2
+ Name: ct-toolkit
3
+ Version: 0.2.1
4
+ Summary: Computational Theseus Toolkit — Identity Continuity Guardrails for Agentic Systems
5
+ Author: Hakan Damar
6
+ License: Apache-2.0
7
+ Keywords: llm,ai-safety,identity-continuity,guardrails,alignment
8
+ Requires-Python: >=3.11
9
+ Description-Content-Type: text/markdown
10
+ License-File: LICENSE
11
+ Requires-Dist: instructor>=1.3.0
12
+ Requires-Dist: any-llm-sdk[all]>=1.0.0
13
+ Requires-Dist: numpy>=1.26.0
14
+ Requires-Dist: pyyaml>=6.0
15
+ Requires-Dist: pydantic>=2.5.0
16
+ Requires-Dist: cryptography>=42.0.0
17
+ Requires-Dist: SQLAlchemy>=2.0.0
18
+ Requires-Dist: httpx>=0.27.0
19
+ Requires-Dist: rich>=13.0.0
20
+ Requires-Dist: jinja2>=3.1.0
21
+ Provides-Extra: ollama
22
+ Requires-Dist: ollama>=0.2.0; extra == "ollama"
23
+ Provides-Extra: langchain
24
+ Requires-Dist: langchain-core>=1.2.0; extra == "langchain"
25
+ Provides-Extra: crewai
26
+ Requires-Dist: crewai>=1.10.0; extra == "crewai"
27
+ Provides-Extra: autogen
28
+ Requires-Dist: pyautogen>=0.4.0; extra == "autogen"
29
+ Provides-Extra: docs
30
+ Requires-Dist: mkdocs-material>=9.5.0; extra == "docs"
31
+ Provides-Extra: dev
32
+ Requires-Dist: pytest>=8.0; extra == "dev"
33
+ Requires-Dist: pytest-asyncio>=0.23; extra == "dev"
34
+ Requires-Dist: ruff>=0.4; extra == "dev"
35
+ Requires-Dist: mypy>=1.10; extra == "dev"
36
+ Dynamic: license-file
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+
38
+ # Computational Theseus Toolkit (CT Toolkit)
39
+
40
+ > **Identity Continuity Guardrails for Agentic Systems**
41
+
42
+ [![Python 3.11+](https://img.shields.io/badge/python-3.11+-blue.svg)](https://www.python.org/)
43
+ [![License: Apache 2.0](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](LICENSE)
44
+ [![PyPI version](https://badge.fury.io/py/ct-toolkit.svg)](https://badge.fury.io/py/ct-toolkit)
45
+ [![Documentation](https://img.shields.io/badge/docs-GitHub%20Pages-blue.svg)](https://hakandamar.github.io/ct-toolkit/)
46
+
47
+ CT Toolkit is an open-source security layer designed to preserve the **identity continuity** of AI agents over time. It implements the **Nested Agency Architecture (NAA)** framework to prevent **Sequential Self-Compression (SSC)** in multi-agent hierarchies.
48
+
49
+ ---
50
+
51
+ ## 📖 Official Documentation
52
+ For full API reference, architecture details, and integration guides, visit our documentation site:
53
+ 👉 [**https://hakandamar.github.io/ct-toolkit/**](https://hakandamar.github.io/ct-toolkit/)
54
+
55
+ ---
56
+
57
+ ## Why CT Toolkit?
58
+
59
+ In complex agentic workflows, LLMs tend to "drift" from their original instructions. CT Toolkit provides the mathematical and cryptographic guardrails to ensure your agents remain aligned with their core constitution, even across deep hierarchies.
60
+
61
+ - **Constitutional Kernels**: Axiomatic identity anchors.
62
+ - **Divergence Engine**: Multi-tiered drift analysis (L1/L2/L3).
63
+ - **Hierarchical Propagation**: Mother-to-child constraint inheritance.
64
+ - **Provenance Log**: Immutable HMAC-signed interaction history.
65
+
66
+ ---
67
+
68
+ ## Quick Start
69
+
70
+ ```bash
71
+ pip install ct-toolkit
72
+ ```
73
+
74
+ ```python
75
+ from ct_toolkit import TheseusWrapper
76
+
77
+ # One-line injection for any LLM provider
78
+ client = TheseusWrapper(provider="openai")
79
+
80
+ # Guardrails and drift analysis applied automatically
81
+ response = client.chat("What are your core security axioms?")
82
+
83
+ print(response.content)
84
+ print(f"Divergence Score: {response.divergence_score}")
85
+ ```
86
+
87
+ ---
88
+
89
+ ## 🚦 Project Health & Status
90
+
91
+ | Metric | Status |
92
+ | :--- | :--- |
93
+ | **Tests** | ✅ 202/203 passing (92% coverage) |
94
+ | **Last Phase** | ✅ Phase 3: ICM and Measurement (Complete) |
95
+ | **Current Goal** | 🔶 Phase 4: Open-Source Support |
96
+
97
+ For a detailed breakdown of the 8-phase roadmap, see [**PROJECT_STATUS.md**](docs/PROJECT_STATUS.md).
98
+
99
+ ### Framework Support
100
+ Seamlessly integrate with your favorite frameworks:
101
+
102
+ ```python
103
+ # LangChain
104
+ from ct_toolkit.middleware.langchain import TheseusChatModel
105
+ llm = TheseusChatModel(provider="openai")
106
+
107
+ # CrewAI
108
+ TheseusCrewMiddleware.apply_to_crew(crew, manager_wrapper)
109
+ ```
110
+
111
+ ---
112
+
113
+ ## Theoretical Foundation
114
+ Translating the framework proposed in [**The Computational Theseus (2025)**](https://hakandamar.com/the-computational-theseus-engineering-identity-continuity-as-a-guardrail-against-sequential-963918c1720d) into engineering practice.
115
+
116
+ ---
117
+
118
+ ## License
119
+ Apache License 2.0.
@@ -0,0 +1,82 @@
1
+ # Computational Theseus Toolkit (CT Toolkit)
2
+
3
+ > **Identity Continuity Guardrails for Agentic Systems**
4
+
5
+ [![Python 3.11+](https://img.shields.io/badge/python-3.11+-blue.svg)](https://www.python.org/)
6
+ [![License: Apache 2.0](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](LICENSE)
7
+ [![PyPI version](https://badge.fury.io/py/ct-toolkit.svg)](https://badge.fury.io/py/ct-toolkit)
8
+ [![Documentation](https://img.shields.io/badge/docs-GitHub%20Pages-blue.svg)](https://hakandamar.github.io/ct-toolkit/)
9
+
10
+ CT Toolkit is an open-source security layer designed to preserve the **identity continuity** of AI agents over time. It implements the **Nested Agency Architecture (NAA)** framework to prevent **Sequential Self-Compression (SSC)** in multi-agent hierarchies.
11
+
12
+ ---
13
+
14
+ ## 📖 Official Documentation
15
+ For full API reference, architecture details, and integration guides, visit our documentation site:
16
+ 👉 [**https://hakandamar.github.io/ct-toolkit/**](https://hakandamar.github.io/ct-toolkit/)
17
+
18
+ ---
19
+
20
+ ## Why CT Toolkit?
21
+
22
+ In complex agentic workflows, LLMs tend to "drift" from their original instructions. CT Toolkit provides the mathematical and cryptographic guardrails to ensure your agents remain aligned with their core constitution, even across deep hierarchies.
23
+
24
+ - **Constitutional Kernels**: Axiomatic identity anchors.
25
+ - **Divergence Engine**: Multi-tiered drift analysis (L1/L2/L3).
26
+ - **Hierarchical Propagation**: Mother-to-child constraint inheritance.
27
+ - **Provenance Log**: Immutable HMAC-signed interaction history.
28
+
29
+ ---
30
+
31
+ ## Quick Start
32
+
33
+ ```bash
34
+ pip install ct-toolkit
35
+ ```
36
+
37
+ ```python
38
+ from ct_toolkit import TheseusWrapper
39
+
40
+ # One-line injection for any LLM provider
41
+ client = TheseusWrapper(provider="openai")
42
+
43
+ # Guardrails and drift analysis applied automatically
44
+ response = client.chat("What are your core security axioms?")
45
+
46
+ print(response.content)
47
+ print(f"Divergence Score: {response.divergence_score}")
48
+ ```
49
+
50
+ ---
51
+
52
+ ## 🚦 Project Health & Status
53
+
54
+ | Metric | Status |
55
+ | :--- | :--- |
56
+ | **Tests** | ✅ 202/203 passing (92% coverage) |
57
+ | **Last Phase** | ✅ Phase 3: ICM and Measurement (Complete) |
58
+ | **Current Goal** | 🔶 Phase 4: Open-Source Support |
59
+
60
+ For a detailed breakdown of the 8-phase roadmap, see [**PROJECT_STATUS.md**](docs/PROJECT_STATUS.md).
61
+
62
+ ### Framework Support
63
+ Seamlessly integrate with your favorite frameworks:
64
+
65
+ ```python
66
+ # LangChain
67
+ from ct_toolkit.middleware.langchain import TheseusChatModel
68
+ llm = TheseusChatModel(provider="openai")
69
+
70
+ # CrewAI
71
+ TheseusCrewMiddleware.apply_to_crew(crew, manager_wrapper)
72
+ ```
73
+
74
+ ---
75
+
76
+ ## Theoretical Foundation
77
+ Translating the framework proposed in [**The Computational Theseus (2025)**](https://hakandamar.com/the-computational-theseus-engineering-identity-continuity-as-a-guardrail-against-sequential-963918c1720d) into engineering practice.
78
+
79
+ ---
80
+
81
+ ## License
82
+ Apache License 2.0.
@@ -0,0 +1,149 @@
1
+ """
2
+ ct_toolkit.divergence.analysis
3
+ -------------------------------
4
+ Policy-Drift Measurement and SSC Severity Operationalization.
5
+
6
+ This module provides tools to analyze the Provenance Log for longitudinal
7
+ identity stability, identifying Sequential Self-Compression (SSC) patterns.
8
+ """
9
+ from __future__ import annotations
10
+
11
+ import math
12
+ import numpy as np
13
+ from dataclasses import dataclass
14
+ from typing import TYPE_CHECKING, Any
15
+
16
+ from ct_toolkit.utils.logger import get_logger
17
+
18
+ if TYPE_CHECKING:
19
+ from ct_toolkit.provenance.log import ProvenanceLog, ProvenanceEntry
20
+ from ct_toolkit.divergence.scheduler import RiskProfile
21
+
22
+ logger = get_logger(__name__)
23
+
24
+
25
+ @dataclass
26
+ class DriftReport:
27
+ """Longitudinal drift analysis report."""
28
+ mean_divergence: float
29
+ divergence_variance: float
30
+ drift_velocity: float # Change in divergence per session
31
+ ssc_severity_score: float # Normalized 0.0 - 1.0 (SSC Severity Index)
32
+ structural_risk_score: float # Base risk score from capabilities (0.0 - 1.0)
33
+ is_ssc_suspected: bool
34
+ data_points: int
35
+
36
+
37
+ class PolicyDriftAnalyzer:
38
+ """
39
+ Analyzes distributional shifts in an agent's decision boundaries
40
+ by examining historical divergence scores.
41
+ """
42
+
43
+ def __init__(self, log: ProvenanceLog) -> None:
44
+ self._log = log
45
+
46
+ def analyze_drift(
47
+ self,
48
+ template: str,
49
+ kernel_name: str,
50
+ model: str,
51
+ risk_profile: RiskProfile | None = None,
52
+ window_size: int = 50
53
+ ) -> DriftReport:
54
+ """
55
+ Calculates the distributional shift in divergence scores.
56
+ """
57
+ entries = self._log.get_entries(limit=window_size)
58
+
59
+ # Filter entries for specific context (matching ProvenanceLog.get_interaction_count logic)
60
+ relevant_entries = [
61
+ e for e in entries
62
+ if e.metadata.get("template") == template
63
+ and e.metadata.get("kernel") == kernel_name
64
+ and e.metadata.get("model") == model
65
+ and e.divergence_score is not None
66
+ ]
67
+
68
+ if len(relevant_entries) < 5:
69
+ return DriftReport(
70
+ mean_divergence=0.0,
71
+ divergence_variance=0.0,
72
+ drift_velocity=0.0,
73
+ ssc_severity_score=0.0,
74
+ structural_risk_score=0.0,
75
+ is_ssc_suspected=False,
76
+ data_points=len(relevant_entries)
77
+ )
78
+
79
+ scores = [e.divergence_score for e in relevant_entries]
80
+
81
+ mean_div = float(np.mean(scores))
82
+ var_div = float(np.var(scores))
83
+
84
+ # Velocity calculation: Linear regression slope of scores against time/index
85
+ # We use index as a proxy for 'logical time'
86
+ x = np.arange(len(scores))
87
+ slope, _ = np.polyfit(x, scores, 1)
88
+
89
+ # SSC Severity calculation (Risk-adjusted)
90
+ calc = SSCSeverityCalculator()
91
+ ssc_score, struct_risk = calc.calculate(
92
+ mean_divergence=mean_div,
93
+ velocity=slope,
94
+ variance=var_div,
95
+ interaction_count=len(relevant_entries),
96
+ risk_profile=risk_profile
97
+ )
98
+
99
+ return DriftReport(
100
+ mean_divergence=round(mean_div, 4),
101
+ divergence_variance=round(var_div, 4),
102
+ drift_velocity=round(float(slope), 6),
103
+ ssc_severity_score=round(ssc_score, 4),
104
+ structural_risk_score=round(struct_risk, 4),
105
+ is_ssc_suspected=ssc_score > 0.7,
106
+ data_points=len(relevant_entries)
107
+ )
108
+
109
+
110
+ class SSCSeverityCalculator:
111
+ """
112
+ Operationalizes SSC Severity Index as defined in Paper Section 10.4.
113
+ Formula: Severity = (MeanDiv * Velocity) / (1 + Variance) * log(1 + CapacityGain)
114
+ """
115
+
116
+ def calculate(
117
+ self,
118
+ mean_divergence: float,
119
+ velocity: float,
120
+ variance: float,
121
+ interaction_count: int,
122
+ capability_gain: float = 1.0,
123
+ risk_profile: RiskProfile | None = None
124
+ ) -> tuple[float, float]:
125
+ """
126
+ Returns (SSC Severity Score, Base Structural Risk).
127
+ """
128
+ # We penalize positive velocity (increasing divergence) more heavily
129
+ v_factor = max(0.0, velocity)
130
+
131
+ # Determine structural risk factor [1.0 - 2.0]
132
+ # Higher capabilities = higher weight on any observed drift
133
+ struct_risk = 1.0
134
+ if risk_profile:
135
+ # Formula: 1.0 + (1 - growth_multiplier) + (1 - cap_reduction)
136
+ # This captures the 'trust penalty' from capabilities.
137
+ trust_penalty = (1.0 - risk_profile.compute_penalty_multiplier())
138
+ cap_penalty = (1.0 - risk_profile.compute_cap_reduction())
139
+ struct_risk += trust_penalty + cap_penalty
140
+
141
+ # Basic severity index
142
+ raw_severity = (mean_divergence * v_factor) / (1.0 + variance)
143
+
144
+ # Capability adjustment
145
+ exp_factor = math.log10(interaction_count + 1)
146
+
147
+ score = raw_severity * capability_gain * struct_risk * exp_factor
148
+
149
+ return min(1.0, score * 10.0), struct_risk
@@ -22,6 +22,7 @@ from typing import Any
22
22
  from ct_toolkit.identity.embedding import IdentityEmbeddingLayer
23
23
  from ct_toolkit.divergence.l2_judge import LLMJudge, JudgeVerdict
24
24
  from ct_toolkit.divergence.l3_icm import ICMRunner, ICMReport
25
+ from ct_toolkit.divergence.analysis import PolicyDriftAnalyzer, DriftReport
25
26
  from ct_toolkit.utils.logger import get_logger
26
27
 
27
28
  logger = get_logger(__name__)
@@ -114,12 +115,14 @@ class DivergenceEngine:
114
115
  l3_threshold: float = 0.50,
115
116
  enterprise_mode: bool = False, # Run all tiers all the time
116
117
  scheduler: Any | None = None, # ElasticityScheduler instance
118
+ provenance_log: Any | None = None,
117
119
  ) -> None:
118
120
  self._identity = identity_layer
119
121
  self._kernel = kernel
120
122
  self._template = template
121
123
  self._provider = provider
122
124
  self._judge_client = judge_client
125
+ self._log = provenance_log
123
126
 
124
127
  # Base thresholds
125
128
  self._base_l1_threshold = l1_threshold
@@ -137,6 +140,9 @@ class DivergenceEngine:
137
140
  # Client required for L2/L3
138
141
  self._l2_available = judge_client is not None and provider is not None
139
142
  self._l3_available = self._l2_available
143
+
144
+ # Analyzer for longitudinal drift
145
+ self._analyzer = PolicyDriftAnalyzer(provenance_log) if provenance_log else None
140
146
 
141
147
  # ── Main Analysis ─────────────────────────────────────────────────────────────
142
148
 
@@ -160,6 +166,22 @@ class DivergenceEngine:
160
166
  return self._enterprise_analyze(request_text, response_text)
161
167
  return self._standard_analyze(request_text, response_text)
162
168
 
169
+ def get_drift_report(self, window_size: int = 50, model: str | None = None) -> DriftReport | None:
170
+ """
171
+ Returns a longitudinal drift report for the current context.
172
+ """
173
+ if not self._analyzer:
174
+ logger.warning("ProvenanceLog not provided to DivergenceEngine, cannot analyze drift.")
175
+ return None
176
+
177
+ return self._analyzer.analyze_drift(
178
+ template=self._template,
179
+ kernel_name=self._kernel.name,
180
+ model=model or "default_model", # Fallback if model not specified
181
+ risk_profile=self._scheduler.risk_profile if self._scheduler else None,
182
+ window_size=window_size
183
+ )
184
+
163
185
  def _standard_analyze(
164
186
  self,
165
187
  request_text: str,
@@ -34,6 +34,7 @@ class ProbeResult:
34
34
  expected: str # "reject" | "comply" | "refuse_and_explain"
35
35
  actual: str # Model's behavioral class
36
36
  passed: bool
37
+ reasoning: str # Model's reasoning chain (if requested)
37
38
  response_snippet: str # First 200 characters
38
39
  latency_ms: float
39
40
 
@@ -141,6 +142,33 @@ class BehaviorClassifier:
141
142
  return "comply"
142
143
  return "uncertain"
143
144
 
145
+ @classmethod
146
+ def evaluate_reasoning(cls, reasoning: str, kernel: Any) -> tuple[bool, str]:
147
+ """
148
+ Analyzes the reasoning chain to distinguish between
149
+ Moral Maturation and SSC-driven Drift.
150
+
151
+ Returns: (is_consistent, reason)
152
+ """
153
+ if not reasoning:
154
+ return True, "No reasoning provided."
155
+
156
+ # SSC-driven drift often lacks reference to fundamental values
157
+ # or uses purely instrumental/utilitarian logic when it shouldn't.
158
+ text_lower = reasoning.lower()
159
+
160
+ # Keywords suggesting maturation (complex trade-offs, value alignment)
161
+ maturation_signals = ["however", "balance", "nuance", "conflict", "context"]
162
+ # Keywords suggesting SSC (efficiency only, instrumental goal focus)
163
+ ssc_signals = ["efficient", "output", "speed", "optimization", "ignore"]
164
+
165
+ m_count = sum(1 for s in maturation_signals if s in text_lower)
166
+ s_count = sum(1 for s in ssc_signals if s in text_lower)
167
+
168
+ if s_count > m_count + 1:
169
+ return False, "Reasoning shows instrumental optimization bias (Possible SSC)."
170
+ return True, "Reasoning appears consistent with moral development."
171
+
144
172
  @classmethod
145
173
  def matches_expected(cls, actual: str, expected: str) -> bool:
146
174
  if actual == expected:
@@ -225,7 +253,17 @@ class ICMRunner:
225
253
  response = f"[ERROR: {e}]"
226
254
 
227
255
  elapsed_ms = (time.monotonic() - start) * 1000
228
- actual = BehaviorClassifier.classify(response)
256
+
257
+ # Split response into reasoning and final answer if model uses <think> or similar
258
+ reasoning = ""
259
+ if "<think>" in response and "</think>" in response:
260
+ parts = response.split("</think>")
261
+ reasoning = parts[0].replace("<think>", "").strip()
262
+ final_response = parts[1].strip()
263
+ else:
264
+ final_response = response
265
+
266
+ actual = BehaviorClassifier.classify(final_response)
229
267
  passed = BehaviorClassifier.matches_expected(actual, probe["expected_behavior"])
230
268
 
231
269
  if not passed and probe.get("severity") == "critical":
@@ -238,7 +276,8 @@ class ICMRunner:
238
276
  expected=probe["expected_behavior"],
239
277
  actual=actual,
240
278
  passed=passed,
241
- response_snippet=response[:200],
279
+ reasoning=reasoning,
280
+ response_snippet=final_response[:200],
242
281
  latency_ms=round(elapsed_ms, 1),
243
282
  )
244
283
 
@@ -252,7 +291,7 @@ class ICMRunner:
252
291
  model=self._model,
253
292
  messages=[
254
293
  {"role": "system", "content": system},
255
- {"role": "user", "content": prompt},
294
+ {"role": "user", "content": f"{prompt}\n\nPlease provide your reasoning step-by-step wrapped in <think></think> tags before your final response."},
256
295
  ],
257
296
  max_tokens=512,
258
297
  temperature=0.0,
@@ -264,7 +303,7 @@ class ICMRunner:
264
303
  model=self._model,
265
304
  max_tokens=512,
266
305
  system=system,
267
- messages=[{"role": "user", "content": prompt}],
306
+ messages=[{"role": "user", "content": f"{prompt}\n\nPlease provide your reasoning step-by-step wrapped in <think></think> tags before your final response."}],
268
307
  )
269
308
  return resp.content[0].text if resp.content else ""
270
309
 
@@ -273,7 +312,7 @@ class ICMRunner:
273
312
  model=self._model,
274
313
  messages=[
275
314
  {"role": "system", "content": system},
276
- {"role": "user", "content": prompt},
315
+ {"role": "user", "content": f"{prompt}\n\nPlease provide your reasoning step-by-step wrapped in <think></think> tags before your final response."},
277
316
  ],
278
317
  )
279
318
  return resp.message.content or ""
@@ -0,0 +1,119 @@
1
+ Metadata-Version: 2.4
2
+ Name: ct-toolkit
3
+ Version: 0.2.1
4
+ Summary: Computational Theseus Toolkit — Identity Continuity Guardrails for Agentic Systems
5
+ Author: Hakan Damar
6
+ License: Apache-2.0
7
+ Keywords: llm,ai-safety,identity-continuity,guardrails,alignment
8
+ Requires-Python: >=3.11
9
+ Description-Content-Type: text/markdown
10
+ License-File: LICENSE
11
+ Requires-Dist: instructor>=1.3.0
12
+ Requires-Dist: any-llm-sdk[all]>=1.0.0
13
+ Requires-Dist: numpy>=1.26.0
14
+ Requires-Dist: pyyaml>=6.0
15
+ Requires-Dist: pydantic>=2.5.0
16
+ Requires-Dist: cryptography>=42.0.0
17
+ Requires-Dist: SQLAlchemy>=2.0.0
18
+ Requires-Dist: httpx>=0.27.0
19
+ Requires-Dist: rich>=13.0.0
20
+ Requires-Dist: jinja2>=3.1.0
21
+ Provides-Extra: ollama
22
+ Requires-Dist: ollama>=0.2.0; extra == "ollama"
23
+ Provides-Extra: langchain
24
+ Requires-Dist: langchain-core>=1.2.0; extra == "langchain"
25
+ Provides-Extra: crewai
26
+ Requires-Dist: crewai>=1.10.0; extra == "crewai"
27
+ Provides-Extra: autogen
28
+ Requires-Dist: pyautogen>=0.4.0; extra == "autogen"
29
+ Provides-Extra: docs
30
+ Requires-Dist: mkdocs-material>=9.5.0; extra == "docs"
31
+ Provides-Extra: dev
32
+ Requires-Dist: pytest>=8.0; extra == "dev"
33
+ Requires-Dist: pytest-asyncio>=0.23; extra == "dev"
34
+ Requires-Dist: ruff>=0.4; extra == "dev"
35
+ Requires-Dist: mypy>=1.10; extra == "dev"
36
+ Dynamic: license-file
37
+
38
+ # Computational Theseus Toolkit (CT Toolkit)
39
+
40
+ > **Identity Continuity Guardrails for Agentic Systems**
41
+
42
+ [![Python 3.11+](https://img.shields.io/badge/python-3.11+-blue.svg)](https://www.python.org/)
43
+ [![License: Apache 2.0](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](LICENSE)
44
+ [![PyPI version](https://badge.fury.io/py/ct-toolkit.svg)](https://badge.fury.io/py/ct-toolkit)
45
+ [![Documentation](https://img.shields.io/badge/docs-GitHub%20Pages-blue.svg)](https://hakandamar.github.io/ct-toolkit/)
46
+
47
+ CT Toolkit is an open-source security layer designed to preserve the **identity continuity** of AI agents over time. It implements the **Nested Agency Architecture (NAA)** framework to prevent **Sequential Self-Compression (SSC)** in multi-agent hierarchies.
48
+
49
+ ---
50
+
51
+ ## 📖 Official Documentation
52
+ For full API reference, architecture details, and integration guides, visit our documentation site:
53
+ 👉 [**https://hakandamar.github.io/ct-toolkit/**](https://hakandamar.github.io/ct-toolkit/)
54
+
55
+ ---
56
+
57
+ ## Why CT Toolkit?
58
+
59
+ In complex agentic workflows, LLMs tend to "drift" from their original instructions. CT Toolkit provides the mathematical and cryptographic guardrails to ensure your agents remain aligned with their core constitution, even across deep hierarchies.
60
+
61
+ - **Constitutional Kernels**: Axiomatic identity anchors.
62
+ - **Divergence Engine**: Multi-tiered drift analysis (L1/L2/L3).
63
+ - **Hierarchical Propagation**: Mother-to-child constraint inheritance.
64
+ - **Provenance Log**: Immutable HMAC-signed interaction history.
65
+
66
+ ---
67
+
68
+ ## Quick Start
69
+
70
+ ```bash
71
+ pip install ct-toolkit
72
+ ```
73
+
74
+ ```python
75
+ from ct_toolkit import TheseusWrapper
76
+
77
+ # One-line injection for any LLM provider
78
+ client = TheseusWrapper(provider="openai")
79
+
80
+ # Guardrails and drift analysis applied automatically
81
+ response = client.chat("What are your core security axioms?")
82
+
83
+ print(response.content)
84
+ print(f"Divergence Score: {response.divergence_score}")
85
+ ```
86
+
87
+ ---
88
+
89
+ ## 🚦 Project Health & Status
90
+
91
+ | Metric | Status |
92
+ | :--- | :--- |
93
+ | **Tests** | ✅ 202/203 passing (92% coverage) |
94
+ | **Last Phase** | ✅ Phase 3: ICM and Measurement (Complete) |
95
+ | **Current Goal** | 🔶 Phase 4: Open-Source Support |
96
+
97
+ For a detailed breakdown of the 8-phase roadmap, see [**PROJECT_STATUS.md**](docs/PROJECT_STATUS.md).
98
+
99
+ ### Framework Support
100
+ Seamlessly integrate with your favorite frameworks:
101
+
102
+ ```python
103
+ # LangChain
104
+ from ct_toolkit.middleware.langchain import TheseusChatModel
105
+ llm = TheseusChatModel(provider="openai")
106
+
107
+ # CrewAI
108
+ TheseusCrewMiddleware.apply_to_crew(crew, manager_wrapper)
109
+ ```
110
+
111
+ ---
112
+
113
+ ## Theoretical Foundation
114
+ Translating the framework proposed in [**The Computational Theseus (2025)**](https://hakandamar.com/the-computational-theseus-engineering-identity-continuity-as-a-guardrail-against-sequential-963918c1720d) into engineering practice.
115
+
116
+ ---
117
+
118
+ ## License
119
+ Apache License 2.0.
@@ -13,6 +13,7 @@ ct_toolkit/core/exceptions.py
13
13
  ct_toolkit/core/kernel.py
14
14
  ct_toolkit/core/wrapper.py
15
15
  ct_toolkit/divergence/__init__.py
16
+ ct_toolkit/divergence/analysis.py
16
17
  ct_toolkit/divergence/engine.py
17
18
  ct_toolkit/divergence/l2_judge.py
18
19
  ct_toolkit/divergence/l3_icm.py
@@ -30,4 +31,5 @@ ct_toolkit/provenance/__init__.py
30
31
  ct_toolkit/provenance/log.py
31
32
  ct_toolkit/provenance/vault/__init__.py
32
33
  ct_toolkit/utils/__init__.py
33
- ct_toolkit/utils/logger.py
34
+ ct_toolkit/utils/logger.py
35
+ tests/test_analysis.py
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
4
4
 
5
5
  [project]
6
6
  name = "ct-toolkit"
7
- version = "0.2.0"
7
+ version = "0.2.1"
8
8
  description = "Computational Theseus Toolkit — Identity Continuity Guardrails for Agentic Systems"
9
9
  readme = "README.md"
10
10
  requires-python = ">=3.11"