crisp-ase 1.0.0.post0.dev0__tar.gz

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  1. crisp_ase-1.0.0.post0.dev0/CRISP/__init__.py +19 -0
  2. crisp_ase-1.0.0.post0.dev0/CRISP/_version.py +1 -0
  3. crisp_ase-1.0.0.post0.dev0/CRISP/cli.py +31 -0
  4. crisp_ase-1.0.0.post0.dev0/CRISP/data_analysis/__init__.py +9 -0
  5. crisp_ase-1.0.0.post0.dev0/CRISP/data_analysis/clustering.py +828 -0
  6. crisp_ase-1.0.0.post0.dev0/CRISP/data_analysis/contact_coordination.py +915 -0
  7. crisp_ase-1.0.0.post0.dev0/CRISP/data_analysis/h_bond.py +716 -0
  8. crisp_ase-1.0.0.post0.dev0/CRISP/data_analysis/msd.py +1179 -0
  9. crisp_ase-1.0.0.post0.dev0/CRISP/data_analysis/prdf.py +403 -0
  10. crisp_ase-1.0.0.post0.dev0/CRISP/data_analysis/volumetric_atomic_density.py +527 -0
  11. crisp_ase-1.0.0.post0.dev0/CRISP/py.typed +1 -0
  12. crisp_ase-1.0.0.post0.dev0/CRISP/simulation_utility/__init__.py +9 -0
  13. crisp_ase-1.0.0.post0.dev0/CRISP/simulation_utility/atomic_indices.py +144 -0
  14. crisp_ase-1.0.0.post0.dev0/CRISP/simulation_utility/atomic_traj_linemap.py +278 -0
  15. crisp_ase-1.0.0.post0.dev0/CRISP/simulation_utility/error_analysis.py +253 -0
  16. crisp_ase-1.0.0.post0.dev0/CRISP/simulation_utility/interatomic_distances.py +198 -0
  17. crisp_ase-1.0.0.post0.dev0/CRISP/simulation_utility/subsampling.py +221 -0
  18. crisp_ase-1.0.0.post0.dev0/CRISP/tests/__init__.py +3 -0
  19. crisp_ase-1.0.0.post0.dev0/CRISP/tests/test_CRISP.py +28 -0
  20. crisp_ase-1.0.0.post0.dev0/CRISP/tests/test_crisp_comprehensive.py +677 -0
  21. crisp_ase-1.0.0.post0.dev0/LICENSE +14 -0
  22. crisp_ase-1.0.0.post0.dev0/MANIFEST.in +3 -0
  23. crisp_ase-1.0.0.post0.dev0/PKG-INFO +116 -0
  24. crisp_ase-1.0.0.post0.dev0/README.md +104 -0
  25. crisp_ase-1.0.0.post0.dev0/crisp_ase.egg-info/PKG-INFO +116 -0
  26. crisp_ase-1.0.0.post0.dev0/crisp_ase.egg-info/SOURCES.txt +31 -0
  27. crisp_ase-1.0.0.post0.dev0/crisp_ase.egg-info/dependency_links.txt +1 -0
  28. crisp_ase-1.0.0.post0.dev0/crisp_ase.egg-info/entry_points.txt +2 -0
  29. crisp_ase-1.0.0.post0.dev0/crisp_ase.egg-info/not-zip-safe +1 -0
  30. crisp_ase-1.0.0.post0.dev0/crisp_ase.egg-info/requires.txt +5 -0
  31. crisp_ase-1.0.0.post0.dev0/crisp_ase.egg-info/top_level.txt +1 -0
  32. crisp_ase-1.0.0.post0.dev0/pyproject.toml +57 -0
  33. crisp_ase-1.0.0.post0.dev0/setup.cfg +4 -0
@@ -0,0 +1,19 @@
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+ """A python package for Post-simulation analysis and visualization"""
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+
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+ from ._version import __version__
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+
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+ from . import data_analysis
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+ from . import simulation_utility
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+
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+ from .data_analysis import clustering
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+ from .data_analysis import contact_coordination
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+ from .data_analysis import h_bond
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+ from .data_analysis import msd
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+ from .data_analysis import prdf
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+ from .data_analysis import volumetric_atomic_density
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+
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+ from .simulation_utility import atomic_indices
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+ from .simulation_utility import atomic_traj_linemap
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+ from .simulation_utility import error_analysis
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+ from .simulation_utility import interatomic_distances
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+ from .simulation_utility import subsampling
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+ __version__ = "1.0.0.post0.dev0"
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+ """Command-line interface for CRISP package."""
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+
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+ import sys
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+ import argparse
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+ from CRISP._version import __version__
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+ from CRISP.tests.runner import run_tests
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+
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+ def main():
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+ """Main entry point for the CRISP command-line tool."""
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+ parser = argparse.ArgumentParser(description="CRISP: Concurrent Remote Interactive Simulation Program")
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+ parser.add_argument('--version', action='version', version=f'CRISP {__version__}')
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+
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+ subparsers = parser.add_subparsers(dest='command', help='CRISP commands')
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+
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+ # Add test subcommand
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+ test_parser = subparsers.add_parser('test', help='Run CRISP test suite')
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+
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+ # Parse arguments
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+ args = parser.parse_args()
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+
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+ # Handle commands
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+ if args.command == 'test':
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+ sys.exit(run_tests())
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+ elif not args.command:
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+ parser.print_help()
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+ return 0
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+
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+ return 0
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+
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+ if __name__ == "__main__":
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+ sys.exit(main())
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+ # CRISP/data_analysis/__init__.py
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+
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+ from .contact_coordination import *
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+ from .h_bond import *
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+ from .prdf import *
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+ from .msd import *
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+ from .clustering import *
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+ from .volumetric_atomic_density import *
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+