cpg-utils 5.7.0__tar.gz → 5.7.1__tar.gz

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Files changed (31) hide show
  1. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/PKG-INFO +1 -1
  2. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/config.py +15 -0
  3. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils.egg-info/PKG-INFO +1 -1
  4. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/setup.py +1 -1
  5. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/LICENSE +0 -0
  6. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/README.md +0 -0
  7. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/__init__.py +0 -0
  8. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/cloud.py +0 -0
  9. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/cloudpath_hail_az.py +0 -0
  10. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/constants.py +0 -0
  11. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/cromwell.py +0 -0
  12. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/cromwell_model.py +0 -0
  13. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/dataproc.py +0 -0
  14. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/existence_checks.py +0 -0
  15. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/git.py +0 -0
  16. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/hail_batch.py +0 -0
  17. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/membership.py +0 -0
  18. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/metamist_registration.py +0 -0
  19. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/py.typed +0 -0
  20. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/slack.py +0 -0
  21. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils.egg-info/SOURCES.txt +0 -0
  22. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils.egg-info/dependency_links.txt +0 -0
  23. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils.egg-info/requires.txt +0 -0
  24. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils.egg-info/top_level.txt +0 -0
  25. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/pyproject.toml +0 -0
  26. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/setup.cfg +0 -0
  27. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/test/__init__.py +0 -0
  28. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/test/test_config.py +0 -0
  29. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/test/test_cromwell.py +0 -0
  30. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/test/test_doctests.py +0 -0
  31. {cpg_utils-5.7.0 → cpg_utils-5.7.1}/test/test_get_google_identity_token.py +0 -0
{cpg_utils-5.7.0 → cpg_utils-5.7.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: cpg-utils
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- Version: 5.7.0
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+ Version: 5.7.1
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  Summary: Library of convenience functions specific to the CPG
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  Home-page: https://github.com/populationgenomics/cpg-utils
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  License: MIT
{cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/config.py RENAMED
@@ -570,3 +570,18 @@ def get_gcloud_set_project(gcp_project: str | None = None) -> str:
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  gcp_project = gcp_project or get_gcp_project()
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  command = ['gcloud', 'config', 'set', 'project', gcp_project]
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  return ' '.join([quote(c) for c in command])
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+
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+
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+ def dataset_for_access_level(dataset_name: str) -> str:
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+ """
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+ Checks access_level in config, modifying dataset with "-test" suffix if appropriate.
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+
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+ >>> dataset_for_access_level('dataset') # with access_level != 'test'
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+ 'dataset'
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+ >>> dataset_for_access_level('dataset') # with access_level == 'test'
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+ 'dataset-test'
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+ """
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+ access_level = config_retrieve(['workflow', 'access_level'], 'standard')
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+ if access_level == 'test' and not dataset_name.endswith('-test'):
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+ return f'{dataset_name}-test'
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+ return dataset_name
{cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: cpg-utils
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- Version: 5.7.0
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+ Version: 5.7.1
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  Summary: Library of convenience functions specific to the CPG
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  Home-page: https://github.com/populationgenomics/cpg-utils
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  License: MIT
{cpg_utils-5.7.0 → cpg_utils-5.7.1}/setup.py RENAMED
@@ -8,7 +8,7 @@ with open('README.md') as f:
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  setup(
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  name='cpg-utils',
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  # This tag is automatically updated by bumpversion
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- version='5.7.0',
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+ version='5.7.1',
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  description='Library of convenience functions specific to the CPG',
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  long_description=long_description,
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  long_description_content_type='text/markdown',
{cpg_utils-5.7.0 → cpg_utils-5.7.1}/LICENSE RENAMED
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{cpg_utils-5.7.0 → cpg_utils-5.7.1}/README.md RENAMED
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{cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/cloud.py RENAMED
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{cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/git.py RENAMED
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{cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/py.typed RENAMED
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{cpg_utils-5.7.0 → cpg_utils-5.7.1}/cpg_utils/slack.py RENAMED
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{cpg_utils-5.7.0 → cpg_utils-5.7.1}/pyproject.toml RENAMED
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{cpg_utils-5.7.0 → cpg_utils-5.7.1}/setup.cfg RENAMED
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{cpg_utils-5.7.0 → cpg_utils-5.7.1}/test/__init__.py RENAMED
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{cpg_utils-5.7.0 → cpg_utils-5.7.1}/test/test_config.py RENAMED
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