cotlab 0.8.2__tar.gz → 0.8.4__tar.gz

cotlab-0.8.4/.github/dependabot.yml

@@ -0,0 +1,7 @@
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "monthly"
+    open-pull-requests-limit: 5

cotlab-0.8.4/.github/workflows/container.yml

@@ -0,0 +1,78 @@
+name: Container
+
+on:
+  push:
+    tags: ["v*"]
+  workflow_dispatch:
+
+jobs:
+  build-and-push:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      packages: write
+
+    steps:
+      - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd
+
+      - name: Display system information
+        run: |
+          echo "OS Information:"
+          uname -a
+          echo ""
+          echo "CPU Information:"
+          nproc 2>/dev/null || sysctl -n hw.ncpu
+          echo "CPU Details:"
+          if [ "$RUNNER_OS" = "macOS" ]; then
+            sysctl -n machdep.cpu.brand_string 2>/dev/null
+            echo "CPU cores: $(sysctl -n hw.ncpu)"
+          else
+            lscpu | head -10
+          fi
+          echo ""
+          echo "Memory Information:"
+          if [ "$RUNNER_OS" = "macOS" ]; then
+            vm_stat | head -5
+          else
+            free -h | awk '/^Mem:/{print "Memory: " $2}'
+            free -h | awk '/^Swap:/{print "Swap: " $2}'
+          fi
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@d7f5e7f509e45cec5c76c4d5afdd7de93d0b3df5
+
+      - name: Log in to GHCR
+        uses: docker/login-action@650006c6eb7dba73a995cc03b0b2d7f5ca915bee
+        with:
+          registry: ghcr.io
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Log in to Docker Hub
+        uses: docker/login-action@650006c6eb7dba73a995cc03b0b2d7f5ca915bee
+        with:
+          username: ${{ secrets.DOCKERHUB_USERNAME }}
+          password: ${{ secrets.DOCKERHUB_TOKEN }}
+        continue-on-error: true
+
+      - name: Lowercase repo for GHCR
+        run: echo "REPO_LOWER=$(echo '${{ github.repository }}' | tr '[:upper:]' '[:lower:]')" >> $GITHUB_ENV
+
+      - name: Build and push to GHCR
+        uses: docker/build-push-action@f9f3042f7e2789586610d6e8b85c8f03e5195baf
+        with:
+          context: .
+          file: ./Containerfile
+          push: true
+          tags: ghcr.io/${{ env.REPO_LOWER }}:latest
+          cache-from: type=gha
+          cache-to: type=gha,mode=max
+
+      - name: Push to Docker Hub
+        uses: docker/build-push-action@f9f3042f7e2789586610d6e8b85c8f03e5195baf
+        with:
+          context: .
+          file: ./Containerfile
+          push: true
+          tags: docker.io/huseyincavus/hprobes:latest
+          cache-from: type=gha
+        continue-on-error: true

cotlab-0.8.4/.github/workflows/docs.yml

@@ -0,0 +1,60 @@
+name: Deploy Documentation
+
+on:
+  push:
+    branches:
+      - main
+    paths:
+      - 'docs/**'
+      - 'mkdocs.yml'
+      - '.github/workflows/docs.yml'
+
+permissions:
+  contents: read
+
+jobs:
+  deploy:
+    runs-on: ubuntu-24.04-arm
+    permissions:
+      contents: write
+    steps:
+      - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
+
+      - name: Display system information
+        run: |
+          echo "OS Information:"
+          uname -a
+          echo ""
+          echo "CPU Information:"
+          nproc 2>/dev/null || sysctl -n hw.ncpu
+          echo "CPU Details:"
+          if [ "$RUNNER_OS" = "macOS" ]; then
+            sysctl -n machdep.cpu.brand_string 2>/dev/null
+            echo "CPU cores: $(sysctl -n hw.ncpu)"
+          else
+            lscpu | head -10
+          fi
+          echo ""
+          echo "Memory Information:"
+          if [ "$RUNNER_OS" = "macOS" ]; then
+            vm_stat | head -5
+          else
+            free -h | awk '/^Mem:/{print "Memory: " $2}'
+            free -h | awk '/^Swap:/{print "Swap: " $2}'
+          fi
+      - name: Set up Python
+        uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
+        with:
+          python-version: "3.11"
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
+        with:
+          enable-cache: true
+          cache-dependency-glob: "pyproject.toml"
+
+      - name: Install dependencies
+        run: uv sync --frozen --extra docs
+
+      - name: Deploy to GitHub Pages
+        run: uv run mkdocs gh-deploy --force

cotlab-0.8.4/.github/workflows/lint.yml

@@ -0,0 +1,58 @@
+name: Lint
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+permissions:
+  contents: read
+
+jobs:
+  lint:
+    runs-on: ubuntu-24.04-arm
+    steps:
+      - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6
+
+      - name: Display system information
+        run: |
+          echo "OS Information:"
+          uname -a
+          echo ""
+          echo "CPU Information:"
+          nproc 2>/dev/null || sysctl -n hw.ncpu
+          echo "CPU Details:"
+          if [ "$RUNNER_OS" = "macOS" ]; then
+            sysctl -n machdep.cpu.brand_string 2>/dev/null
+            echo "CPU cores: $(sysctl -n hw.ncpu)"
+          else
+            lscpu | head -10
+          fi
+          echo ""
+          echo "Memory Information:"
+          if [ "$RUNNER_OS" = "macOS" ]; then
+            vm_stat | head -5
+          else
+            free -h | awk '/^Mem:/{print "Memory: " $2}'
+            free -h | awk '/^Swap:/{print "Swap: " $2}'
+          fi
+      - name: Set up Python
+        uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6
+        with:
+          python-version: "3.11"
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
+        with:
+          enable-cache: true
+          cache-dependency-glob: "pyproject.toml"
+
+      - name: Install dependencies
+        run: uv sync --frozen --extra dev
+
+      - name: Check formatting
+        run: uv run ruff format --check src/ tests/
+
+      - name: Lint
+        run: uv run ruff check src/ tests/

cotlab-0.8.4/.github/workflows/release.yml

@@ -0,0 +1,57 @@
+name: Release
+
+on:
+  push:
+    tags:
+      - "v*"
+
+permissions:
+  contents: read
+
+jobs:
+  release:
+    runs-on: ubuntu-24.04-arm
+    environment: release
+    permissions:
+      contents: write
+      id-token: write
+
+    steps:
+      - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
+
+      - name: Display system information
+        run: |
+          echo "OS Information:"
+          uname -a
+          echo ""
+          echo "CPU Information:"
+          nproc 2>/dev/null || sysctl -n hw.ncpu
+          echo "CPU Details:"
+          if [ "$RUNNER_OS" = "macOS" ]; then
+            sysctl -n machdep.cpu.brand_string 2>/dev/null
+            echo "CPU cores: $(sysctl -n hw.ncpu)"
+          else
+            lscpu | head -10
+          fi
+          echo ""
+          echo "Memory Information:"
+          if [ "$RUNNER_OS" = "macOS" ]; then
+            vm_stat | head -5
+          else
+            free -h | awk '/^Mem:/{print "Memory: " $2}'
+            free -h | awk '/^Swap:/{print "Swap: " $2}'
+          fi
+      - uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v5
+
+      - name: Build
+        run: uv build
+
+      - name: Publish to PyPI
+        run: uv publish
+        # Uses OIDC trusted publishing — no token needed if configured on PyPI
+
+      - name: Create GitHub Release
+        uses: softprops/action-gh-release@718ea10b132b3b2eba29c1007bb80653f286566b # v2
+        with:
+          generate_release_notes: true
+          files: dist/*

cotlab-0.8.4/.github/workflows/tests.yml

@@ -0,0 +1,119 @@
+name: Tests
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+permissions:
+  contents: read
+
+jobs:
+  unit-tests:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest, macos-latest]
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
+
+    steps:
+      - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6
+
+      - name: Display system information
+        run: |
+          echo "OS Information:"
+          uname -a
+          echo ""
+          echo "CPU Information:"
+          nproc 2>/dev/null || sysctl -n hw.ncpu
+          echo "CPU Details:"
+          if [ "$RUNNER_OS" = "macOS" ]; then
+            sysctl -n machdep.cpu.brand_string 2>/dev/null
+            echo "CPU cores: $(sysctl -n hw.ncpu)"
+          else
+            lscpu | head -10
+          fi
+          echo ""
+          echo "Memory Information:"
+          if [ "$RUNNER_OS" = "macOS" ]; then
+            vm_stat | head -5
+          else
+            free -h | awk '/^Mem:/{print "Memory: " $2}'
+            free -h | awk '/^Swap:/{print "Swap: " $2}'
+          fi
+      - name: Free disk space (Linux)
+        if: runner.os == 'Linux'
+        run: |
+          sudo rm -rf /usr/share/dotnet /usr/local/lib/android /opt/ghc /opt/hostedtoolcache/CodeQL
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
+        with:
+          enable-cache: true
+          cache-dependency-glob: "pyproject.toml"
+
+      - name: Install dependencies
+        run: uv sync --frozen --extra dev
+
+      - name: Run unit tests
+        run: uv run pytest tests/test_core.py tests/test_backends.py tests/test_datasets.py tests/test_prompts.py tests/test_patching.py tests/test_analysis.py -v --tb=short
+
+  integration-tests:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6
+
+      - name: Display system information
+        run: |
+          echo "OS Information:"
+          uname -a
+          echo ""
+          echo "CPU Information:"
+          nproc 2>/dev/null || sysctl -n hw.ncpu
+          echo "CPU Details:"
+          if [ "$RUNNER_OS" = "macOS" ]; then
+            sysctl -n machdep.cpu.brand_string 2>/dev/null
+            echo "CPU cores: $(sysctl -n hw.ncpu)"
+          else
+            lscpu | head -10
+          fi
+          echo ""
+          echo "Memory Information:"
+          if [ "$RUNNER_OS" = "macOS" ]; then
+            vm_stat | head -5
+          else
+            free -h | awk '/^Mem:/{print "Memory: " $2}'
+            free -h | awk '/^Swap:/{print "Swap: " $2}'
+          fi
+      - name: Set up Python 3.11
+        uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6
+        with:
+          python-version: "3.11"
+
+      - name: Cache Hugging Face models
+        uses: actions/cache@v5
+        with:
+          path: ~/.cache/huggingface
+          key: ${{ runner.os }}-hf-gpt2
+          restore-keys: |
+            ${{ runner.os }}-hf-
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
+        with:
+          enable-cache: true
+          cache-dependency-glob: "pyproject.toml"
+
+      - name: Install dependencies
+        run: |
+          uv sync --frozen --extra dev
+          uv pip install .
+
+      - name: Run integration tests
+        run: uv run pytest tests/test_experiment_docs.py -v --tb=short

{cotlab-0.8.2 → cotlab-0.8.4}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: cotlab
-Version: 0.8.2
+Version: 0.8.4
 Summary: CoTLab - Chain of Thought Research Toolkit for LLMs
 Project-URL: Repository, https://github.com/huseyincavusbi/CoTLab
 Project-URL: Documentation, https://huseyincavusbi.github.io/CoTLab

{cotlab-0.8.2 → cotlab-0.8.4}/pyproject.toml

@@ -4,7 +4,8 @@ build-backend = "hatchling.build"
 
 [project]
 name = "cotlab"
-dynamic = ["version"]
+version = "0.8.4"
+dynamic = []
 description = "CoTLab - Chain of Thought Research Toolkit for LLMs"
 readme = "README.md"
 requires-python = ">=3.10"
@@ -75,9 +76,6 @@ Issues = "https://github.com/huseyincavusbi/CoTLab/issues"
 cotlab = "cotlab.main:main"
 cotlab-template = "cotlab.cli:cli"
 
-[tool.hatch.version]
-path = "src/cotlab/__init__.py"
-
 [tool.hatch.build.targets.wheel]
 packages = ["src/cotlab"]
 

cotlab-0.8.4/src/cotlab/__init__.py

@@ -0,0 +1,5 @@
+"""CoTLab - Chain of Thought Research Toolkit."""
+
+from importlib.metadata import version as _metadata_version
+
+__version__ = _metadata_version("cotlab")