cosmopharm 0.0.10__tar.gz → 0.0.12__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (24) hide show
  1. {cosmopharm-0.0.10/src/cosmopharm.egg-info → cosmopharm-0.0.12}/PKG-INFO +57 -67
  2. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/README.md +1 -11
  3. cosmopharm-0.0.12/README.rst +98 -0
  4. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/setup.cfg +3 -3
  5. {cosmopharm-0.0.10 → cosmopharm-0.0.12/src/cosmopharm.egg-info}/PKG-INFO +57 -67
  6. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/src/cosmopharm.egg-info/SOURCES.txt +1 -0
  7. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/LICENSE +0 -0
  8. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/setup.py +0 -0
  9. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/src/cosmopharm/__init__.py +0 -0
  10. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/src/cosmopharm/actmodels/__init__.py +0 -0
  11. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/src/cosmopharm/actmodels/actmodel.py +0 -0
  12. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/src/cosmopharm/actmodels/cosmo.py +0 -0
  13. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/src/cosmopharm/components.py +0 -0
  14. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/src/cosmopharm/equilibrium/__init__.py +0 -0
  15. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/src/cosmopharm/equilibrium/lle.py +0 -0
  16. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/src/cosmopharm/equilibrium/sle.py +0 -0
  17. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/src/cosmopharm/utils/__init__.py +0 -0
  18. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/src/cosmopharm/utils/convert.py +0 -0
  19. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/src/cosmopharm/utils/helpers.py +0 -0
  20. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/src/cosmopharm/utils/lle_scanner.py +0 -0
  21. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/src/cosmopharm/utils/spacing.py +0 -0
  22. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/src/cosmopharm.egg-info/dependency_links.txt +0 -0
  23. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/src/cosmopharm.egg-info/requires.txt +0 -0
  24. {cosmopharm-0.0.10 → cosmopharm-0.0.12}/src/cosmopharm.egg-info/top_level.txt +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: cosmopharm
3
- Version: 0.0.10
3
+ Version: 0.0.12
4
4
  Summary: Predictive modeling for drug-polymer compatibility in pharmaceutical formulations using COSMO-SAC.
5
5
  Home-page: https://github.com/ivanantolo/cosmopharm,
6
6
  Author: Ivan Antolovic
@@ -27,7 +27,7 @@ Classifier: Programming Language :: Python :: 3.11
27
27
  Classifier: Programming Language :: Python :: 3.12
28
28
  Classifier: Programming Language :: Python :: 3.13
29
29
  Requires-Python: >=3.8
30
- Description-Content-Type: text/markdown
30
+ Description-Content-Type: text/x-rst
31
31
  License-File: LICENSE
32
32
  Requires-Dist: matplotlib>=3.0
33
33
  Requires-Dist: numpy>=1.15
@@ -35,111 +35,101 @@ Requires-Dist: pandas>=1.0
35
35
  Requires-Dist: scipy>=1.4
36
36
  Requires-Dist: openpyxl>=3.0
37
37
 
38
- # COSMOPharm
38
+ COSMOPharm
39
+ ==========
39
40
 
40
- <p align="center">
41
- <img src="https://github.com/ivanantolo/cosmopharm/raw/main/TOC.png" alt="TOC Figure" width="400"/>
42
- </p>
41
+ .. figure:: https://github.com/ivanantolo/cosmopharm/raw/main/TOC.png
43
42
 
44
- <img src="https://github.com/ivanantolo/cosmopharm/raw/main/TOC.png" alt="TOC Figure" width="400"/>
43
+ Welcome to the COSMOPharm repository, accompanying `our paper in J. Chem. Theory Comput. <https://dx.doi.org/10.1021/acs.jctc.9b01016>`_. This project and its associated publication offer insights and a practical toolkit for researching drug-polymer and drug-solvent systems, aiming to provide the scientific community with the means to reproduce our findings and further the development of COSMO-SAC-based models.
45
44
 
46
- ![TOC Figure](https://raw.githubusercontent.com/ivanantolo/cosmopharm/main/TOC.png)
47
-
48
- <img src="https://raw.githubusercontent.com/ivanantolo/cosmopharm/main/TOC.png" alt="TOC Figure" width="400"/>
49
-
50
- <!-- <p align="center"> -->
51
- ![TOC Figure](https://raw.githubusercontent.com/ivanantolo/cosmopharm/main/TOC.png)
52
- <!-- </p> -->
53
-
54
-
55
- Welcome to the COSMOPharm repository, accompanying [our paper in *J. Chem. Theory Comput.*](https://dx.doi.org/10.1021/acs.jctc.9b01016). This project and its associated publication offer insights and a practical toolkit for researching drug-polymer and drug-solvent systems, aiming to provide the scientific community with the means to reproduce our findings and further the development of COSMO-SAC-based models.
56
-
57
- ## About
45
+ About
46
+ -----
58
47
 
59
48
  COSMOPharm is a Python package designed to streamline the predictive modeling of drug-polymer compatibility, crucial for the development of pharmaceutical amorphous solid dispersions. Apart from that, it can also be used for the miscibility/solubility of drugs with/in common solvents. Leveraging the COSMO-SAC (Conductor-like Screening Model Segment Activity Coefficient) model, COSMOPharm offers a robust platform for scientists and researchers to predict solubility, miscibility, and phase behavior in drug formulation processes.
60
49
 
61
- ## Features
50
+ Features
51
+ --------
62
52
 
63
53
  - **Compatibility Prediction**: Utilize open-source COSMO-SAC model for prediction of drug-polymer compatibility.
64
54
  - **Solubility Calculation**: Calculate drug-polymer solubilities to guide the selection of suitable polymers for drug formulations.
65
55
  - **Miscibility and Phase Behavior Analysis**: Analyze the miscibility of drug-polymer pairs and understand their phase behavior under various conditions.
66
56
  - **User-friendly Interface**: Easy-to-use functions and comprehensive documentation to facilitate research and development in pharmaceutical sciences.
67
57
 
68
- ## Installation
69
-
70
- ### Quick Installation
71
- For most users, the quickest and easiest way to install COSMOPharm is via pip, which will manage all dependencies for you. Ensure you have already installed the cCOSMO library by following the instructions on the [COSMOSAC GitHub page](https://github.com/usnistgov/COSMOSAC).
58
+ Installation
59
+ ------------
72
60
 
73
- Once cCOSMO is installed, you can install COSMOPharm directly from [PyPI](https://pypi.org/project/cosmopharm/):
61
+ Quick Installation
62
+ ~~~~~~~~~~~~~~~~~~
74
63
 
75
- ```
76
- pip install cosmopharm
77
- ```
64
+ For most users, the quickest and easiest way to install COSMOPharm is via pip, which will manage all dependencies for you. Ensure you have already installed the cCOSMO library by following the instructions on the `COSMOSAC GitHub page <https://github.com/usnistgov/COSMOSAC>`_.
78
65
 
79
- ### Advanced Installation Options
66
+ Once cCOSMO is installed, you can install COSMOPharm directly from `PyPI <https://pypi.org/project/cosmopharm/>`_:
80
67
 
81
- For users who need more control over the installation process (e.g., for development purposes or when integrating with other projects), COSMOPharm can also be installed by cloning the repository and installing manually.
68
+ .. code-block:: bash
82
69
 
83
- #### Step 1: Clone the Repository
70
+ pip install cosmopharm
84
71
 
85
- First, clone the COSMOPharm repository:
86
- ```
87
- git clone https://github.com/ivanantolo/cosmopharm
88
- ```
72
+ Advanced Installation Options
73
+ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
89
74
 
90
- #### Step 2: Navigate to the Repository Directory
75
+ For users who need more control over the installation process (e.g., for development purposes or when integrating with other projects), COSMOPharm can also be installed by cloning the repository and installing manually.
91
76
 
92
- ```
93
- cd cosmopharm
94
- ```
77
+ Step 1: Clone the Repository
78
+ """""""""""""""""""""""""""""
95
79
 
96
- #### Option 1: Using pip to Install from Local Source
80
+ First, clone the COSMOPharm repository:
97
81
 
98
- This method installs COSMOPharm and manages all dependencies efficiently:
82
+ .. code-block:: bash
99
83
 
100
- ```
101
- pip install .
102
- ```
84
+ git clone https://github.com/ivanantolo/cosmopharm
103
85
 
86
+ Step 2: Navigate to the Repository Directory
87
+ """"""""""""""""""""""""""""""""""""""""""""
104
88
 
105
- #### Option 2: Using setup.py for Installation
89
+ .. code-block:: bash
106
90
 
107
- Alternatively, you can run the setup script directly:
91
+ cd cosmopharm
108
92
 
109
- ```
110
- python setup.py install
111
- ```
93
+ Option 1: Using pip to Install from Local Source
94
+ """"""""""""""""""""""""""""""""""""""""""""""""
112
95
 
113
- While this method is straightforward, using `pip` is generally preferred for its dependency management capabilities.
96
+ This method installs COSMOPharm and manages all dependencies efficiently:
114
97
 
115
- Please note: Before proceeding with either advanced installation option, ensure the cCOSMO library is installed as described at the beginning of this section.
98
+ .. code-block:: bash
116
99
 
117
- ## Quick Start
100
+ pip install .
118
101
 
119
- Here's a quick example to get you started with COSMOPharm: [Example](https://github.com/ivanantolo/cosmopharm/blob/main/example_usage.py)
102
+ Option 2: Using setup.py for Installation
103
+ """"""""""""""""""""""""""""""""""""""""""
120
104
 
121
- ```python
122
- # Example usage script: example_usage.py
105
+ Alternatively, you can run the setup script directly:
123
106
 
124
- import cCOSMO
125
- from cosmopharm import SLE, LLE, COSMOSAC
126
- from cosmopharm.utils import read_params, create_components
107
+ .. code-block:: bash
127
108
 
128
- # Rest of the script...
129
- ```
109
+ python setup.py install
130
110
 
131
- ## Contributing / Getting Help
111
+ While this method is straightforward, using `pip` is generally preferred for its dependency management capabilities.
132
112
 
133
- Contributions to COSMOPharm are welcome! We accept contributions via pull requests to the [GitHub repository](https://github.com/ivanantolo/cosmopharm).
113
+ Please note: Before proceeding with either advanced installation option, ensure the cCOSMO library is installed as described at the beginning of this section.
134
114
 
135
- For bugs, feature requests, or other queries, please [open an issue](https://github.com/ivanantolo/cosmopharm/issues) on GitHub.
115
+ Quick Start
116
+ -----------
136
117
 
118
+ Here's a quick example to get you started with COSMOPharm: `Example <https://github.com/ivanantolo/cosmopharm/blob/main/example_usage.py>`_
137
119
 
138
- ## Citation
120
+ .. code-block:: python
139
121
 
140
- If you use COSMOPharm in your research, please consider citing it. You can find the citation format in [CITATION.md](https://github.com/ivanantolo/cosmopharm/CITATION.md).
122
+ # Example usage script: example_usage.py
123
+
124
+ import cCOSMO
125
+ from cosmopharm import SLE, LLE, COSMOSAC
126
+ from cosmopharm.utils import read_params, create_components
127
+
128
+ # Rest of the script...
141
129
 
130
+ Contributing / Getting Help
131
+ ---------------------------
142
132
 
143
- ## License
133
+ Contributions to COSMOPharm are welcome! We accept contributions via pull requests to the `GitHub repository <https://github.com/ivanantolo/cosmopharm>`_.
144
134
 
145
- COSMOPharm is released under the MIT License. See the [LICENSE](https://github.com/ivanantolo/cosmopharm/LICENSE) file for more details.
135
+ For bugs, feature requests, or other queries, please `open an issue <https://github.com/ivanantolo/cosmopharm/issues>`
@@ -1,19 +1,9 @@
1
1
  # COSMOPharm
2
2
 
3
3
  <p align="center">
4
- <img src="https://github.com/ivanantolo/cosmopharm/raw/main/TOC.png" alt="TOC Figure" width="400"/>
4
+ <img src="TOC.png" alt="TOC Figure" width="400"/>
5
5
  </p>
6
6
 
7
- <img src="https://github.com/ivanantolo/cosmopharm/raw/main/TOC.png" alt="TOC Figure" width="400"/>
8
-
9
- ![TOC Figure](https://raw.githubusercontent.com/ivanantolo/cosmopharm/main/TOC.png)
10
-
11
- <img src="https://raw.githubusercontent.com/ivanantolo/cosmopharm/main/TOC.png" alt="TOC Figure" width="400"/>
12
-
13
- <!-- <p align="center"> -->
14
- ![TOC Figure](https://raw.githubusercontent.com/ivanantolo/cosmopharm/main/TOC.png)
15
- <!-- </p> -->
16
-
17
7
 
18
8
  Welcome to the COSMOPharm repository, accompanying [our paper in *J. Chem. Theory Comput.*](https://dx.doi.org/10.1021/acs.jctc.9b01016). This project and its associated publication offer insights and a practical toolkit for researching drug-polymer and drug-solvent systems, aiming to provide the scientific community with the means to reproduce our findings and further the development of COSMO-SAC-based models.
19
9
 
@@ -0,0 +1,98 @@
1
+ COSMOPharm
2
+ ==========
3
+
4
+ .. figure:: https://github.com/ivanantolo/cosmopharm/raw/main/TOC.png
5
+
6
+ Welcome to the COSMOPharm repository, accompanying `our paper in J. Chem. Theory Comput. <https://dx.doi.org/10.1021/acs.jctc.9b01016>`_. This project and its associated publication offer insights and a practical toolkit for researching drug-polymer and drug-solvent systems, aiming to provide the scientific community with the means to reproduce our findings and further the development of COSMO-SAC-based models.
7
+
8
+ About
9
+ -----
10
+
11
+ COSMOPharm is a Python package designed to streamline the predictive modeling of drug-polymer compatibility, crucial for the development of pharmaceutical amorphous solid dispersions. Apart from that, it can also be used for the miscibility/solubility of drugs with/in common solvents. Leveraging the COSMO-SAC (Conductor-like Screening Model Segment Activity Coefficient) model, COSMOPharm offers a robust platform for scientists and researchers to predict solubility, miscibility, and phase behavior in drug formulation processes.
12
+
13
+ Features
14
+ --------
15
+
16
+ - **Compatibility Prediction**: Utilize open-source COSMO-SAC model for prediction of drug-polymer compatibility.
17
+ - **Solubility Calculation**: Calculate drug-polymer solubilities to guide the selection of suitable polymers for drug formulations.
18
+ - **Miscibility and Phase Behavior Analysis**: Analyze the miscibility of drug-polymer pairs and understand their phase behavior under various conditions.
19
+ - **User-friendly Interface**: Easy-to-use functions and comprehensive documentation to facilitate research and development in pharmaceutical sciences.
20
+
21
+ Installation
22
+ ------------
23
+
24
+ Quick Installation
25
+ ~~~~~~~~~~~~~~~~~~
26
+
27
+ For most users, the quickest and easiest way to install COSMOPharm is via pip, which will manage all dependencies for you. Ensure you have already installed the cCOSMO library by following the instructions on the `COSMOSAC GitHub page <https://github.com/usnistgov/COSMOSAC>`_.
28
+
29
+ Once cCOSMO is installed, you can install COSMOPharm directly from `PyPI <https://pypi.org/project/cosmopharm/>`_:
30
+
31
+ .. code-block:: bash
32
+
33
+ pip install cosmopharm
34
+
35
+ Advanced Installation Options
36
+ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37
+
38
+ For users who need more control over the installation process (e.g., for development purposes or when integrating with other projects), COSMOPharm can also be installed by cloning the repository and installing manually.
39
+
40
+ Step 1: Clone the Repository
41
+ """""""""""""""""""""""""""""
42
+
43
+ First, clone the COSMOPharm repository:
44
+
45
+ .. code-block:: bash
46
+
47
+ git clone https://github.com/ivanantolo/cosmopharm
48
+
49
+ Step 2: Navigate to the Repository Directory
50
+ """"""""""""""""""""""""""""""""""""""""""""
51
+
52
+ .. code-block:: bash
53
+
54
+ cd cosmopharm
55
+
56
+ Option 1: Using pip to Install from Local Source
57
+ """"""""""""""""""""""""""""""""""""""""""""""""
58
+
59
+ This method installs COSMOPharm and manages all dependencies efficiently:
60
+
61
+ .. code-block:: bash
62
+
63
+ pip install .
64
+
65
+ Option 2: Using setup.py for Installation
66
+ """"""""""""""""""""""""""""""""""""""""""
67
+
68
+ Alternatively, you can run the setup script directly:
69
+
70
+ .. code-block:: bash
71
+
72
+ python setup.py install
73
+
74
+ While this method is straightforward, using `pip` is generally preferred for its dependency management capabilities.
75
+
76
+ Please note: Before proceeding with either advanced installation option, ensure the cCOSMO library is installed as described at the beginning of this section.
77
+
78
+ Quick Start
79
+ -----------
80
+
81
+ Here's a quick example to get you started with COSMOPharm: `Example <https://github.com/ivanantolo/cosmopharm/blob/main/example_usage.py>`_
82
+
83
+ .. code-block:: python
84
+
85
+ # Example usage script: example_usage.py
86
+
87
+ import cCOSMO
88
+ from cosmopharm import SLE, LLE, COSMOSAC
89
+ from cosmopharm.utils import read_params, create_components
90
+
91
+ # Rest of the script...
92
+
93
+ Contributing / Getting Help
94
+ ---------------------------
95
+
96
+ Contributions to COSMOPharm are welcome! We accept contributions via pull requests to the `GitHub repository <https://github.com/ivanantolo/cosmopharm>`_.
97
+
98
+ For bugs, feature requests, or other queries, please `open an issue <https://github.com/ivanantolo/cosmopharm/issues>`
@@ -1,14 +1,14 @@
1
1
  [metadata]
2
2
  name = cosmopharm
3
- version = 0.0.10
3
+ version = 0.0.12
4
4
  author = Ivan Antolovic
5
5
  author_email = Ivan.Antolovic@tu-berlin.de
6
6
  maintainer = Martin Klajmon
7
7
  maintainer_email = Martin.Klajmon@vscht.cz
8
8
  description =
9
9
  Predictive modeling for drug-polymer compatibility in pharmaceutical formulations using COSMO-SAC.
10
- long_description = file: README.md
11
- long_description_content_type = text/markdown
10
+ long_description = file: README.rst
11
+ long_description_content_type = text/x-rst
12
12
  keywords = Drug-Polymer Compatibility, Amorphous Solid Dispersions, Pharmaceutical Formulation, COSMO-SAC Model, Solubility Prediction, Miscibility Analysis, Phase Behavior Prediction, Pharmaceutical Sciences, Drug Formulation Research, Polymer Science, Predictive Modeling in Pharma, Drug Development Tools, Biopharmaceuticals
13
13
  url = https://github.com/ivanantolo/cosmopharm,
14
14
  license = MIT
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: cosmopharm
3
- Version: 0.0.10
3
+ Version: 0.0.12
4
4
  Summary: Predictive modeling for drug-polymer compatibility in pharmaceutical formulations using COSMO-SAC.
5
5
  Home-page: https://github.com/ivanantolo/cosmopharm,
6
6
  Author: Ivan Antolovic
@@ -27,7 +27,7 @@ Classifier: Programming Language :: Python :: 3.11
27
27
  Classifier: Programming Language :: Python :: 3.12
28
28
  Classifier: Programming Language :: Python :: 3.13
29
29
  Requires-Python: >=3.8
30
- Description-Content-Type: text/markdown
30
+ Description-Content-Type: text/x-rst
31
31
  License-File: LICENSE
32
32
  Requires-Dist: matplotlib>=3.0
33
33
  Requires-Dist: numpy>=1.15
@@ -35,111 +35,101 @@ Requires-Dist: pandas>=1.0
35
35
  Requires-Dist: scipy>=1.4
36
36
  Requires-Dist: openpyxl>=3.0
37
37
 
38
- # COSMOPharm
38
+ COSMOPharm
39
+ ==========
39
40
 
40
- <p align="center">
41
- <img src="https://github.com/ivanantolo/cosmopharm/raw/main/TOC.png" alt="TOC Figure" width="400"/>
42
- </p>
41
+ .. figure:: https://github.com/ivanantolo/cosmopharm/raw/main/TOC.png
43
42
 
44
- <img src="https://github.com/ivanantolo/cosmopharm/raw/main/TOC.png" alt="TOC Figure" width="400"/>
43
+ Welcome to the COSMOPharm repository, accompanying `our paper in J. Chem. Theory Comput. <https://dx.doi.org/10.1021/acs.jctc.9b01016>`_. This project and its associated publication offer insights and a practical toolkit for researching drug-polymer and drug-solvent systems, aiming to provide the scientific community with the means to reproduce our findings and further the development of COSMO-SAC-based models.
45
44
 
46
- ![TOC Figure](https://raw.githubusercontent.com/ivanantolo/cosmopharm/main/TOC.png)
47
-
48
- <img src="https://raw.githubusercontent.com/ivanantolo/cosmopharm/main/TOC.png" alt="TOC Figure" width="400"/>
49
-
50
- <!-- <p align="center"> -->
51
- ![TOC Figure](https://raw.githubusercontent.com/ivanantolo/cosmopharm/main/TOC.png)
52
- <!-- </p> -->
53
-
54
-
55
- Welcome to the COSMOPharm repository, accompanying [our paper in *J. Chem. Theory Comput.*](https://dx.doi.org/10.1021/acs.jctc.9b01016). This project and its associated publication offer insights and a practical toolkit for researching drug-polymer and drug-solvent systems, aiming to provide the scientific community with the means to reproduce our findings and further the development of COSMO-SAC-based models.
56
-
57
- ## About
45
+ About
46
+ -----
58
47
 
59
48
  COSMOPharm is a Python package designed to streamline the predictive modeling of drug-polymer compatibility, crucial for the development of pharmaceutical amorphous solid dispersions. Apart from that, it can also be used for the miscibility/solubility of drugs with/in common solvents. Leveraging the COSMO-SAC (Conductor-like Screening Model Segment Activity Coefficient) model, COSMOPharm offers a robust platform for scientists and researchers to predict solubility, miscibility, and phase behavior in drug formulation processes.
60
49
 
61
- ## Features
50
+ Features
51
+ --------
62
52
 
63
53
  - **Compatibility Prediction**: Utilize open-source COSMO-SAC model for prediction of drug-polymer compatibility.
64
54
  - **Solubility Calculation**: Calculate drug-polymer solubilities to guide the selection of suitable polymers for drug formulations.
65
55
  - **Miscibility and Phase Behavior Analysis**: Analyze the miscibility of drug-polymer pairs and understand their phase behavior under various conditions.
66
56
  - **User-friendly Interface**: Easy-to-use functions and comprehensive documentation to facilitate research and development in pharmaceutical sciences.
67
57
 
68
- ## Installation
69
-
70
- ### Quick Installation
71
- For most users, the quickest and easiest way to install COSMOPharm is via pip, which will manage all dependencies for you. Ensure you have already installed the cCOSMO library by following the instructions on the [COSMOSAC GitHub page](https://github.com/usnistgov/COSMOSAC).
58
+ Installation
59
+ ------------
72
60
 
73
- Once cCOSMO is installed, you can install COSMOPharm directly from [PyPI](https://pypi.org/project/cosmopharm/):
61
+ Quick Installation
62
+ ~~~~~~~~~~~~~~~~~~
74
63
 
75
- ```
76
- pip install cosmopharm
77
- ```
64
+ For most users, the quickest and easiest way to install COSMOPharm is via pip, which will manage all dependencies for you. Ensure you have already installed the cCOSMO library by following the instructions on the `COSMOSAC GitHub page <https://github.com/usnistgov/COSMOSAC>`_.
78
65
 
79
- ### Advanced Installation Options
66
+ Once cCOSMO is installed, you can install COSMOPharm directly from `PyPI <https://pypi.org/project/cosmopharm/>`_:
80
67
 
81
- For users who need more control over the installation process (e.g., for development purposes or when integrating with other projects), COSMOPharm can also be installed by cloning the repository and installing manually.
68
+ .. code-block:: bash
82
69
 
83
- #### Step 1: Clone the Repository
70
+ pip install cosmopharm
84
71
 
85
- First, clone the COSMOPharm repository:
86
- ```
87
- git clone https://github.com/ivanantolo/cosmopharm
88
- ```
72
+ Advanced Installation Options
73
+ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
89
74
 
90
- #### Step 2: Navigate to the Repository Directory
75
+ For users who need more control over the installation process (e.g., for development purposes or when integrating with other projects), COSMOPharm can also be installed by cloning the repository and installing manually.
91
76
 
92
- ```
93
- cd cosmopharm
94
- ```
77
+ Step 1: Clone the Repository
78
+ """""""""""""""""""""""""""""
95
79
 
96
- #### Option 1: Using pip to Install from Local Source
80
+ First, clone the COSMOPharm repository:
97
81
 
98
- This method installs COSMOPharm and manages all dependencies efficiently:
82
+ .. code-block:: bash
99
83
 
100
- ```
101
- pip install .
102
- ```
84
+ git clone https://github.com/ivanantolo/cosmopharm
103
85
 
86
+ Step 2: Navigate to the Repository Directory
87
+ """"""""""""""""""""""""""""""""""""""""""""
104
88
 
105
- #### Option 2: Using setup.py for Installation
89
+ .. code-block:: bash
106
90
 
107
- Alternatively, you can run the setup script directly:
91
+ cd cosmopharm
108
92
 
109
- ```
110
- python setup.py install
111
- ```
93
+ Option 1: Using pip to Install from Local Source
94
+ """"""""""""""""""""""""""""""""""""""""""""""""
112
95
 
113
- While this method is straightforward, using `pip` is generally preferred for its dependency management capabilities.
96
+ This method installs COSMOPharm and manages all dependencies efficiently:
114
97
 
115
- Please note: Before proceeding with either advanced installation option, ensure the cCOSMO library is installed as described at the beginning of this section.
98
+ .. code-block:: bash
116
99
 
117
- ## Quick Start
100
+ pip install .
118
101
 
119
- Here's a quick example to get you started with COSMOPharm: [Example](https://github.com/ivanantolo/cosmopharm/blob/main/example_usage.py)
102
+ Option 2: Using setup.py for Installation
103
+ """"""""""""""""""""""""""""""""""""""""""
120
104
 
121
- ```python
122
- # Example usage script: example_usage.py
105
+ Alternatively, you can run the setup script directly:
123
106
 
124
- import cCOSMO
125
- from cosmopharm import SLE, LLE, COSMOSAC
126
- from cosmopharm.utils import read_params, create_components
107
+ .. code-block:: bash
127
108
 
128
- # Rest of the script...
129
- ```
109
+ python setup.py install
130
110
 
131
- ## Contributing / Getting Help
111
+ While this method is straightforward, using `pip` is generally preferred for its dependency management capabilities.
132
112
 
133
- Contributions to COSMOPharm are welcome! We accept contributions via pull requests to the [GitHub repository](https://github.com/ivanantolo/cosmopharm).
113
+ Please note: Before proceeding with either advanced installation option, ensure the cCOSMO library is installed as described at the beginning of this section.
134
114
 
135
- For bugs, feature requests, or other queries, please [open an issue](https://github.com/ivanantolo/cosmopharm/issues) on GitHub.
115
+ Quick Start
116
+ -----------
136
117
 
118
+ Here's a quick example to get you started with COSMOPharm: `Example <https://github.com/ivanantolo/cosmopharm/blob/main/example_usage.py>`_
137
119
 
138
- ## Citation
120
+ .. code-block:: python
139
121
 
140
- If you use COSMOPharm in your research, please consider citing it. You can find the citation format in [CITATION.md](https://github.com/ivanantolo/cosmopharm/CITATION.md).
122
+ # Example usage script: example_usage.py
123
+
124
+ import cCOSMO
125
+ from cosmopharm import SLE, LLE, COSMOSAC
126
+ from cosmopharm.utils import read_params, create_components
127
+
128
+ # Rest of the script...
141
129
 
130
+ Contributing / Getting Help
131
+ ---------------------------
142
132
 
143
- ## License
133
+ Contributions to COSMOPharm are welcome! We accept contributions via pull requests to the `GitHub repository <https://github.com/ivanantolo/cosmopharm>`_.
144
134
 
145
- COSMOPharm is released under the MIT License. See the [LICENSE](https://github.com/ivanantolo/cosmopharm/LICENSE) file for more details.
135
+ For bugs, feature requests, or other queries, please `open an issue <https://github.com/ivanantolo/cosmopharm/issues>`
@@ -1,5 +1,6 @@
1
1
  LICENSE
2
2
  README.md
3
+ README.rst
3
4
  setup.cfg
4
5
  setup.py
5
6
  src/cosmopharm/__init__.py
File without changes
File without changes