cosmol-viewer 0.1.5.dev3__tar.gz → 0.1.5.dev4__tar.gz

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Files changed (38) hide show
  1. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/Cargo.lock +3 -31
  2. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/Cargo.toml +3 -6
  3. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/PKG-INFO +1 -1
  4. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/core/Cargo.toml +1 -1
  5. cosmol_viewer-0.1.5.dev4/crates/core/src/parser/mmcif.rs +692 -0
  6. cosmol_viewer-0.1.5.dev4/crates/core/src/parser/mod.rs +2 -0
  7. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/core/src/scene.rs +1 -5
  8. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/core/src/shader/canvas.rs +12 -8
  9. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/core/src/shapes/molecules.rs +44 -89
  10. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/core/src/shapes/protein.rs +14 -8
  11. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/python/cosmol_viewer.pyi +52 -2
  12. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/python/src/lib.rs +28 -7
  13. cosmol_viewer-0.1.5.dev4/crates/python/src/parser.rs +40 -0
  14. cosmol_viewer-0.1.5.dev4/crates/python/src/render_molecule.py +18 -0
  15. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/python/src/shapes.rs +42 -2
  16. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/pyproject.toml +1 -1
  17. cosmol_viewer-0.1.5.dev3/crates/core/src/parser/mod.rs +0 -2
  18. cosmol_viewer-0.1.5.dev3/crates/core/src/parser/protein.rs +0 -96
  19. cosmol_viewer-0.1.5.dev3/crates/python/src/parser.rs +0 -24
  20. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/README.md +0 -0
  21. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/core/src/lib.rs +0 -0
  22. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/core/src/parser/sdf.rs +0 -0
  23. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/core/src/shader/bg_fragment.glsl +0 -0
  24. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/core/src/shader/bg_vertex.glsl +0 -0
  25. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/core/src/shader/fragment.glsl +0 -0
  26. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/core/src/shader/mod.rs +0 -0
  27. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/core/src/shader/vertex.glsl +0 -0
  28. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/core/src/shader/vertex_sphere.glsl +0 -0
  29. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/core/src/shader/vertex_stick.glsl +0 -0
  30. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/core/src/shapes/mod.rs +0 -0
  31. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/core/src/shapes/sphere.rs +0 -0
  32. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/core/src/shapes/stick.rs +0 -0
  33. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/core/src/utils.rs +0 -0
  34. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/python/Cargo.toml +0 -0
  35. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/python/README.md +0 -0
  36. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/python/build.rs +0 -0
  37. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/wasm/Cargo.toml +0 -0
  38. {cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/wasm/src/lib.rs +0 -0
{cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/Cargo.lock RENAMED
@@ -531,18 +531,6 @@ dependencies = [
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  "virtue",
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  ]
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- [[package]]
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- name = "bio_files"
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- version = "0.3.5"
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- source = "git+https://github.com/950288/bio_files#c4c499f437a99f7e84c121da7da68ca7d521f9b3"
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- dependencies = [
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- "byteorder",
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- "lin_alg",
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- "na_seq",
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- "rayon",
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- "regex",
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- ]
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-
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  [[package]]
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  name = "bit-set"
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  version = "0.8.0"
@@ -645,12 +633,6 @@ dependencies = [
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  "syn",
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  ]
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- [[package]]
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- name = "byteorder"
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- version = "1.5.0"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "1fd0f2584146f6f2ef48085050886acf353beff7305ebd1ae69500e27c67f64b"
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-
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  [[package]]
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  name = "byteorder-lite"
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  version = "0.1.0"
@@ -870,16 +852,15 @@ dependencies = [
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  [[package]]
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  name = "cosmol_viewer"
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- version = "0.1.5-nightly.3"
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+ version = "0.1.5-nightly.4"
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  dependencies = [
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  "cosmol_viewer_core",
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  ]
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  [[package]]
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  name = "cosmol_viewer_core"
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- version = "0.1.5-nightly.3"
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+ version = "0.1.5-nightly.4"
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  dependencies = [
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- "bio_files",
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  "bytemuck",
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  "eframe",
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  "egui-winit",
@@ -888,6 +869,7 @@ dependencies = [
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  "image",
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  "na_seq",
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  "once_cell",
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+ "regex",
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  "serde",
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  "serde_json",
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  "serde_repr",
@@ -2033,16 +2015,6 @@ dependencies = [
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  "redox_syscall 0.5.18",
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  ]
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- [[package]]
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- name = "lin_alg"
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- version = "1.3.10"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "b2d9f38896540c0870ab0232121113dd6c7d16743d05177a58046da8ef139723"
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- dependencies = [
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- "num-traits",
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- "paste",
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- ]
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-
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  [[package]]
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  name = "linux-raw-sys"
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  version = "0.4.15"
{cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/Cargo.toml RENAMED
@@ -1,6 +1,6 @@
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  [workspace.package]
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  edition = "2024"
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- version = "0.1.5-nightly.3"
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+ version = "0.1.5-nightly.4"
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  authors = ["9028 wjt@cosmol.org"]
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  repository = "https://github.com/COSMol-repl/COSMol-viewer"
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  homepage = "https://github.com/COSMol-repl/COSMol-viewer"
@@ -13,8 +13,8 @@ resolver = "2"
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  members = ["crates/python"]
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  [workspace.dependencies]
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- cosmol_viewer = { version = "0.1.5-nightly.3", path = "cosmol_viewer"}
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- cosmol_viewer_core = { version = "0.1.5-nightly.3", path = "crates/core" }
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+ cosmol_viewer = { version = "0.1.5-nightly.4", path = "cosmol_viewer"}
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+ cosmol_viewer_core = { version = "0.1.5-nightly.4", path = "crates/core" }
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  pyo3 = { version = "0.27.1", features = ["extension-module", "abi3-py37"] }
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  eframe = { version = "0.33.2", features = ["wayland","x11"] }
@@ -23,6 +23,3 @@ egui_extras = { version = "0.33.2" }
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  serde = { version = "1.0.228" , features = ["derive"] }
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  serde_json = "1.0.145"
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  base64 = "0.22.1"
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-
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- [patch.crates-io]
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- bio_files = { git = "https://github.com/950288/bio_files" }
{cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: cosmol-viewer
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- Version: 0.1.5.dev3
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+ Version: 0.1.5.dev4
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  Summary: Molecular visualization tools
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  Author-email: 95028 <wjt@cosmol.org>
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  Description-Content-Type: text/markdown; charset=UTF-8; variant=GFM
{cosmol_viewer-0.1.5.dev3 → cosmol_viewer-0.1.5.dev4}/crates/core/Cargo.toml RENAMED
@@ -12,7 +12,7 @@ serde_json.workspace = true
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  egui_extras.workspace = true
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  serde.workspace = true
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  glam = { version = "0.30.8" , features = ["serde"] }
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- bio_files = "0.3.5"
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+ regex = "1.12.2"
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  na_seq = "0.3.6"
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  bytemuck = "1.24.0"
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  serde_repr = "0.1.20"