cortical-tools 0.0.1__tar.gz

cortical_tools-0.0.1/.bmv-post-commit.sh

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+#!/bin/bash
+git push --tags

cortical_tools-0.0.1/.github/workflows/mkdocs_publish.yml

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+name: mkdocs 
+on:
+  push:
+    branches:
+      - master 
+      - main
+permissions:
+  contents: write
+jobs:
+  deploy:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - name: Configure Git Credentials
+        run: |
+          git config user.name github-actions[bot]
+          git config user.email 41898282+github-actions[bot]@users.noreply.github.com
+      - uses: actions/setup-python@v5
+        with:
+          python-version: 3.x
+      - run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_ENV 
+      - uses: actions/cache@v4
+        with:
+          key: mkdocs-material-${{ env.cache_id }}
+          path: .cache
+          restore-keys: |
+            mkdocs-material-
+      - run: pip install mkdocs-material mkdocstrings[python]
+      - run: mkdocs gh-deploy --force

cortical_tools-0.0.1/.github/workflows/python-package.yml

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+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
+
+name: Python test and lint
+
+on:
+  push:
+    branches: [ "master" ]
+  pull_request:
+    branches: [ "master" ]
+
+jobs:
+  build:
+    name: python
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.9", "3.10", "3.11", "3.12"]
+    steps:
+      - uses: actions/checkout@v4
+      - name: Install uv
+        uses: astral-sh/setup-uv@v2
+        with:
+          version: "0.5.2"
+      - name: Install project and dependencies
+        run: uv sync --python ${{ matrix.python-version }}
+      - name: Run tests
+        run: uv run pytest tests
+      - name: Lint with ruff
+        run: uv run ruff check src/*

cortical_tools-0.0.1/.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# pyenv
+.python-version
+
+# celery beat schedule file
+celerybeat-schedule
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+
+.DS_Store
+test-reports/
+var/
+.vscode
+*.orig
+*.sublime-workspace
+
+scratch.ipynb

cortical_tools-0.0.1/.pre-commit-config.yaml

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+files: src|tests
+
+repos:
+- repo: https://github.com/astral-sh/ruff-pre-commit
+  rev: v0.11.2
+  hooks:
+    # Run the linter.
+    - id: ruff 
+      types_or: [ python, pyi]
+    - id: ruff
+      args: ["--select", "I", "--fix"]
+    - id: ruff-format
+      types_or: [ python, pyi]

cortical_tools-0.0.1/LICENSE

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+MIT License
+
+Copyright (c) 2024 Casey Schneider-Mizell
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

cortical_tools-0.0.1/PKG-INFO

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+Metadata-Version: 2.4
+Name: cortical-tools
+Version: 0.0.1
+Summary: Client for cortical CAVE datasets
+Author-email: Casey Schneider-Mizell <caseysm@gmail.com>
+License-File: LICENSE
+Classifier: License :: OSI Approved :: MIT License
+Requires-Python: >=3.10
+Requires-Dist: caveclient>=7.7.4
+Requires-Dist: cloud-volume>=12.3.1
+Requires-Dist: gpytoolbox>=0.3.6
+Requires-Dist: nglui>=4.4.2
+Requires-Dist: numpy>=2.0.2
+Requires-Dist: pandas>=2.2.3
+Requires-Dist: pcg-skel>=1.3.1
+Requires-Dist: standard-transform>=1.4.1
+Requires-Dist: tqdm-joblib>=0.0.4
+Description-Content-Type: text/markdown
+
+Welcome to CortexClient!

cortical_tools-0.0.1/README.md

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+Welcome to CortexClient!