corner 2.2.2__tar.gz → 2.2.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (105) hide show
  1. corner-2.2.3/.copier-answers.yml +28 -0
  2. corner-2.2.3/.github/dependabot.yml +6 -0
  3. {corner-2.2.2 → corner-2.2.3}/.github/workflows/tests.yml +10 -13
  4. {corner-2.2.2 → corner-2.2.3}/.pre-commit-config.yaml +4 -4
  5. {corner-2.2.2/src/corner.egg-info → corner-2.2.3}/PKG-INFO +19 -9
  6. corner-2.2.3/corner.png +0 -0
  7. corner-2.2.3/demo.py +51 -0
  8. corner-2.2.3/docs/.gitignore +5 -0
  9. corner-2.2.3/docs/Makefile +231 -0
  10. corner-2.2.3/docs/_static/corner.png +0 -0
  11. corner-2.2.3/docs/api.rst +14 -0
  12. corner-2.2.3/docs/conf.py +44 -0
  13. corner-2.2.3/docs/index.md +69 -0
  14. corner-2.2.3/docs/install.rst +58 -0
  15. corner-2.2.3/docs/pages/arviz.ipynb +75 -0
  16. corner-2.2.3/docs/pages/custom.ipynb +136 -0
  17. corner-2.2.3/docs/pages/matplotlibrc +3 -0
  18. corner-2.2.3/docs/pages/quickstart.ipynb +97 -0
  19. corner-2.2.3/docs/pages/sigmas.ipynb +103 -0
  20. corner-2.2.3/paper/corner.png +0 -0
  21. corner-2.2.3/paper/paper.bib +26 -0
  22. corner-2.2.3/paper/paper.json +17 -0
  23. corner-2.2.3/paper/paper.md +37 -0
  24. corner-2.2.3/paper/paper.tex +114 -0
  25. {corner-2.2.2 → corner-2.2.3}/pyproject.toml +7 -4
  26. {corner-2.2.2 → corner-2.2.3}/src/corner/core.py +8 -2
  27. corner-2.2.3/src/corner/version.py +16 -0
  28. corner-2.2.3/tests/baseline_images/test_corner/1d_fig_argument.png +0 -0
  29. corner-2.2.3/tests/baseline_images/test_corner/arviz.png +0 -0
  30. corner-2.2.3/tests/baseline_images/test_corner/basic.png +0 -0
  31. corner-2.2.3/tests/baseline_images/test_corner/basic_log.png +0 -0
  32. corner-2.2.3/tests/baseline_images/test_corner/basic_log_x2_only.png +0 -0
  33. corner-2.2.3/tests/baseline_images/test_corner/bins.png +0 -0
  34. corner-2.2.3/tests/baseline_images/test_corner/bins_log.png +0 -0
  35. corner-2.2.3/tests/baseline_images/test_corner/color.png +0 -0
  36. corner-2.2.3/tests/baseline_images/test_corner/color_filled.png +0 -0
  37. corner-2.2.3/tests/baseline_images/test_corner/extended_overplotting.png +0 -0
  38. corner-2.2.3/tests/baseline_images/test_corner/hist_bin_factor.png +0 -0
  39. corner-2.2.3/tests/baseline_images/test_corner/hist_bin_factor_log.png +0 -0
  40. corner-2.2.3/tests/baseline_images/test_corner/labels.png +0 -0
  41. corner-2.2.3/tests/baseline_images/test_corner/no_fill_contours.png +0 -0
  42. corner-2.2.3/tests/baseline_images/test_corner/overplot.png +0 -0
  43. corner-2.2.3/tests/baseline_images/test_corner/overplot_1d.png +0 -0
  44. corner-2.2.3/tests/baseline_images/test_corner/overplot_log.png +0 -0
  45. corner-2.2.3/tests/baseline_images/test_corner/pandas.png +0 -0
  46. corner-2.2.3/tests/baseline_images/test_corner/quantiles.png +0 -0
  47. corner-2.2.3/tests/baseline_images/test_corner/quantiles_log.png +0 -0
  48. corner-2.2.3/tests/baseline_images/test_corner/range_fig_arg.png +0 -0
  49. corner-2.2.3/tests/baseline_images/test_corner/reverse.png +0 -0
  50. corner-2.2.3/tests/baseline_images/test_corner/reverse_log.png +0 -0
  51. corner-2.2.3/tests/baseline_images/test_corner/reverse_overplotting.png +0 -0
  52. corner-2.2.3/tests/baseline_images/test_corner/reverse_truths.png +0 -0
  53. corner-2.2.3/tests/baseline_images/test_corner/smooth.png +0 -0
  54. corner-2.2.3/tests/baseline_images/test_corner/smooth1d.png +0 -0
  55. corner-2.2.3/tests/baseline_images/test_corner/smooth1d_log.png +0 -0
  56. corner-2.2.3/tests/baseline_images/test_corner/smooth_log.png +0 -0
  57. corner-2.2.3/tests/baseline_images/test_corner/tight.png +0 -0
  58. corner-2.2.3/tests/baseline_images/test_corner/title_quantiles.png +0 -0
  59. corner-2.2.3/tests/baseline_images/test_corner/title_quantiles_default.png +0 -0
  60. corner-2.2.3/tests/baseline_images/test_corner/title_quantiles_raises.png +0 -0
  61. corner-2.2.3/tests/baseline_images/test_corner/titles1.png +0 -0
  62. corner-2.2.3/tests/baseline_images/test_corner/titles2.png +0 -0
  63. corner-2.2.3/tests/baseline_images/test_corner/top_ticks.png +0 -0
  64. corner-2.2.3/tests/baseline_images/test_corner/truths.png +0 -0
  65. corner-2.2.3/tests/baseline_images/test_hist2d/backgroundColor.png +0 -0
  66. corner-2.2.3/tests/baseline_images/test_hist2d/backgroundDark.png +0 -0
  67. corner-2.2.3/tests/baseline_images/test_hist2d/backgroundDark2.png +0 -0
  68. corner-2.2.3/tests/baseline_images/test_hist2d/backgroundSolarized.png +0 -0
  69. corner-2.2.3/tests/baseline_images/test_hist2d/basic.png +0 -0
  70. corner-2.2.3/tests/baseline_images/test_hist2d/color.png +0 -0
  71. corner-2.2.3/tests/baseline_images/test_hist2d/cutoff.png +0 -0
  72. corner-2.2.3/tests/baseline_images/test_hist2d/cutoff2.png +0 -0
  73. corner-2.2.3/tests/baseline_images/test_hist2d/filled.png +0 -0
  74. corner-2.2.3/tests/baseline_images/test_hist2d/levels1.png +0 -0
  75. corner-2.2.3/tests/baseline_images/test_hist2d/levels2.png +0 -0
  76. corner-2.2.3/tests/baseline_images/test_hist2d/lowN.png +0 -0
  77. corner-2.2.3/tests/baseline_images/test_hist2d/lowNfilled.png +0 -0
  78. corner-2.2.3/tests/baseline_images/test_hist2d/lowNnofill.png +0 -0
  79. corner-2.2.3/tests/baseline_images/test_hist2d/philsplot.png +0 -0
  80. corner-2.2.3/tests/baseline_images/test_hist2d/smooth1.png +0 -0
  81. corner-2.2.3/tests/baseline_images/test_hist2d/smooth2.png +0 -0
  82. corner-2.2.3/tests/conftest.py +23 -0
  83. corner-2.2.3/tests/test_corner.py +399 -0
  84. corner-2.2.3/tests/test_hist2d.py +182 -0
  85. corner-2.2.3/tests/test_quantile.py +55 -0
  86. corner-2.2.2/.coveragerc +0 -4
  87. corner-2.2.2/PKG-INFO +0 -46
  88. corner-2.2.2/setup.cfg +0 -4
  89. corner-2.2.2/setup.py +0 -7
  90. corner-2.2.2/src/corner/version.py +0 -4
  91. corner-2.2.2/src/corner.egg-info/SOURCES.txt +0 -23
  92. corner-2.2.2/src/corner.egg-info/dependency_links.txt +0 -1
  93. corner-2.2.2/src/corner.egg-info/requires.txt +0 -17
  94. corner-2.2.2/src/corner.egg-info/top_level.txt +0 -1
  95. {corner-2.2.2 → corner-2.2.3}/.gitignore +0 -0
  96. {corner-2.2.2 → corner-2.2.3}/CODE_OF_CONDUCT.md +0 -0
  97. {corner-2.2.2 → corner-2.2.3}/CONTRIBUTING.md +0 -0
  98. {corner-2.2.2 → corner-2.2.3}/LICENSE +0 -0
  99. {corner-2.2.2 → corner-2.2.3}/MANIFEST.in +0 -0
  100. {corner-2.2.2 → corner-2.2.3}/README.md +0 -0
  101. {corner-2.2.2 → corner-2.2.3}/noxfile.py +0 -0
  102. {corner-2.2.2 → corner-2.2.3}/readthedocs.yaml +0 -0
  103. {corner-2.2.2 → corner-2.2.3}/src/corner/__init__.py +0 -0
  104. {corner-2.2.2 → corner-2.2.3}/src/corner/arviz_corner.py +0 -0
  105. {corner-2.2.2 → corner-2.2.3}/src/corner/corner.py +0 -0
@@ -0,0 +1,28 @@
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+ _commit: v0.0.14
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+ _src_path: gh:dfm/copier-python
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+ author_email: foreman.mackey@gmail.com
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+ author_fullname: Dan Foreman-Mackey
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+ author_username: dfm
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+ code_of_conduct_email: foreman.mackey@gmail.com
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+ copyright_holder: Dan Foreman-Mackey
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+ copyright_license: BSD
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+ copyright_year: 2013-2022
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+ documentation_url: https://corner.readthedocs.io
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+ enable_mypy: false
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+ enable_pybind11: false
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+ enable_windows: false
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+ general_nox_sessions: '"lint"'
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+ project_description: Make some beautiful corner plots
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+ project_development_status: stable
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+ project_line_length: 79
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+ project_name: corner.py
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+ python_formal_min_version: 6
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+ python_max_version: 10
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+ python_min_version: 7
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+ python_nox_sessions: '"tests"'
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+ python_package_distribution_name: corner
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+ python_package_import_name: corner
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+ readthedocs_project_name: corner
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+ repository_name: corner.py
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+ repository_namespace: dfm
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+
@@ -0,0 +1,6 @@
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+ version: 2
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+ updates:
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+ - package-ecosystem: "github-actions"
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+ directory: "/"
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+ schedule:
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+ interval: "monthly"
@@ -15,29 +15,26 @@ jobs:
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  fail-fast: false
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  matrix:
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  os: ["ubuntu-latest"]
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- python-version: ["3.9", "3.10", "3.11"]
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+ python-version: ["3.10", "3.11", "3.12"]
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  nox-session: ["tests"]
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  include:
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- - os: macos-latest
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- python-version: "3.10"
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- nox-session: "tests"
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  - os: ubuntu-latest
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  python-version: "3.10"
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  nox-session: "lint"
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  steps:
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  - name: Checkout
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- uses: actions/checkout@v3
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+ uses: actions/checkout@v4
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  with:
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  submodules: true
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  fetch-depth: 0
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  - name: Configure Python
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- uses: actions/setup-python@v4
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+ uses: actions/setup-python@v5
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  with:
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  python-version: ${{ matrix.python-version }}
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  - name: Cache pre-commit environments
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  if: ${{ matrix.nox-session == 'lint' }}
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- uses: actions/cache@v3
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+ uses: actions/cache@v4
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  with:
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  path: ~/.cache/pre-commit
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  key: ${{ runner.os }}-pre-commit-${{ hashFiles('.pre-commit-config.yaml') }}
@@ -50,7 +47,7 @@ jobs:
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  - name: Run tests
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  run: python -m nox --non-interactive -s ${{ matrix.nox-session }}
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  - name: Upload generated images on failure
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- uses: actions/upload-artifact@v3
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+ uses: actions/upload-artifact@v4
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  if: ${{ failure() && matrix.nox-session == 'tests' }}
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  with:
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  name: images-${{ matrix.os }}-${{ matrix.python-version }}
@@ -59,10 +56,10 @@ jobs:
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  build:
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  runs-on: ubuntu-latest
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  steps:
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- - uses: actions/checkout@v3
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+ - uses: actions/checkout@v4
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  with:
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  fetch-depth: 0
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- - uses: actions/setup-python@v4
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+ - uses: actions/setup-python@v5
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  name: Install Python
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  with:
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  python-version: "3.10"
@@ -71,7 +68,7 @@ jobs:
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  python -m pip install -U pip
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  python -m pip install -U build
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  python -m build .
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- - uses: actions/upload-artifact@v3
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+ - uses: actions/upload-artifact@v4
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  with:
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  path: dist/*
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@@ -80,12 +77,12 @@ jobs:
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  runs-on: ubuntu-latest
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  if: startsWith(github.ref, 'refs/tags/')
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  steps:
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- - uses: actions/download-artifact@v3
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+ - uses: actions/download-artifact@v4
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  with:
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  name: artifact
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  path: dist
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- - uses: pypa/gh-action-pypi-publish@v1.8.4
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+ - uses: pypa/gh-action-pypi-publish@v1.11.0
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  with:
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  user: __token__
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  password: ${{ secrets.pypi_password }}
@@ -7,7 +7,7 @@ repos:
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  language: fail
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  files: "\\.rej$"
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  - repo: https://github.com/pre-commit/pre-commit-hooks
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- rev: v4.4.0
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+ rev: v5.0.0
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  hooks:
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  - id: trailing-whitespace
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  - id: end-of-file-fixer
@@ -15,15 +15,15 @@ repos:
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  exclude: ".copier-answers.yml"
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  - id: check-yaml
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  - repo: https://github.com/PyCQA/isort
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- rev: "5.12.0"
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+ rev: "5.13.2"
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  hooks:
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  - id: isort
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  additional_dependencies: [toml]
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  - repo: https://github.com/psf/black
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- rev: "23.3.0"
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+ rev: "24.10.0"
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  hooks:
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  - id: black-jupyter
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  - repo: https://github.com/kynan/nbstripout
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- rev: "0.6.1"
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+ rev: "0.8.1"
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  hooks:
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  - id: nbstripout
@@ -1,22 +1,32 @@
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- Metadata-Version: 2.1
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+ Metadata-Version: 2.3
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  Name: corner
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- Version: 2.2.2
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+ Version: 2.2.3
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  Summary: Make some beautiful corner plots
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- Author-email: Dan Foreman-Mackey <foreman.mackey@gmail.com>
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- License: BSD 2-Clause License
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  Project-URL: Homepage, https://corner.readthedocs.io
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  Project-URL: Source, https://github.com/dfm/corner.py
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  Project-URL: Bug Tracker, https://github.com/dfm/corner.py/issues
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- Classifier: Operating System :: OS Independent
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- Classifier: Programming Language :: Python :: 3
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+ Author-email: Dan Foreman-Mackey <foreman.mackey@gmail.com>
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+ License: BSD 2-Clause License
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  Classifier: Development Status :: 5 - Production/Stable
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  Classifier: License :: OSI Approved :: BSD License
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+ Classifier: Operating System :: OS Independent
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+ Classifier: Programming Language :: Python :: 3
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  Requires-Python: >=3.9
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- Description-Content-Type: text/markdown
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- Provides-Extra: test
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+ Requires-Dist: matplotlib>=2.1
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  Provides-Extra: arviz
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+ Requires-Dist: arviz>=0.9; extra == 'arviz'
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  Provides-Extra: docs
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- License-File: LICENSE
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+ Requires-Dist: arviz>=0.9; extra == 'docs'
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+ Requires-Dist: ipython; extra == 'docs'
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+ Requires-Dist: myst-nb; extra == 'docs'
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+ Requires-Dist: pandoc; extra == 'docs'
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+ Requires-Dist: sphinx-book-theme; extra == 'docs'
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+ Requires-Dist: sphinx>=1.7.5; extra == 'docs'
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+ Provides-Extra: test
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+ Requires-Dist: arviz>=0.9; extra == 'test'
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+ Requires-Dist: pytest; extra == 'test'
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+ Requires-Dist: scipy; extra == 'test'
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+ Description-Content-Type: text/markdown
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  # corner.py
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Binary file
corner-2.2.3/demo.py ADDED
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+ #!/usr/bin/env python
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+
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+
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+ import numpy as np
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+ from matplotlib import rcParams
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+
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+ import corner
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+
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+ rcParams["font.size"] = 16
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+ rcParams["font.family"] = "sans-serif"
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+ rcParams["font.sans-serif"] = ["Computer Modern Sans"]
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+ rcParams["text.usetex"] = True
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+ rcParams["text.latex.preamble"] = r"\usepackage{cmbright}"
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+
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+ np.random.seed(42)
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+
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+ # Set up the parameters of the problem.
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+ ndim, nsamples = 3, 50000
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+
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+ # Generate some fake data.
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+ data1 = np.random.randn(ndim * 4 * nsamples / 5).reshape(
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+ [4 * nsamples / 5, ndim]
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+ )
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+ data2 = 4 * np.random.rand(ndim)[None, :] + np.random.randn(
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+ ndim * nsamples / 5
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+ ).reshape([nsamples / 5, ndim])
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+ data = np.vstack([data1, data2])
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+
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+ # Plot it.
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+ figure = corner.corner(
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+ data,
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+ labels=[
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+ r"$x$",
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+ r"$y$",
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+ r"$\log \alpha$",
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+ r"$\Gamma \, [\mathrm{parsec}]$",
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+ ],
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+ quantiles=[0.16, 0.5, 0.84],
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+ show_titles=True,
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+ title_kwargs={"fontsize": 12},
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+ )
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+ figure.gca().annotate(
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+ "a demo corner plot",
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+ xy=(1.0, 1.0),
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+ xycoords="figure fraction",
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+ xytext=(-20, -10),
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+ textcoords="offset points",
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+ ha="right",
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+ va="top",
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+ )
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+ figure.savefig("demo.png", dpi=300)
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+ _*
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+ !_static
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+ !*.png
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+ modules
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+ examples
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+ # Makefile for Sphinx documentation
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+
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+ default: dirhtml
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+
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+ # You can set these variables from the command line.
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+ SPHINXOPTS =
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+ SPHINXBUILD = sphinx-build
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+ PAPER =
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+ BUILDDIR = _build
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+
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+ # User-friendly check for sphinx-build
12
+ ifeq ($(shell which $(SPHINXBUILD) >/dev/null 2>&1; echo $$?), 1)
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+ $(error The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don\'t have Sphinx installed, grab it from http://sphinx-doc.org/)
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+ endif
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+
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+ # Internal variables.
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+ PAPEROPT_a4 = -D latex_paper_size=a4
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+ PAPEROPT_letter = -D latex_paper_size=letter
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+ ALLSPHINXOPTS = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
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+ # the i18n builder cannot share the environment and doctrees with the others
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+ I18NSPHINXOPTS = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
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+
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+ .PHONY: help
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+ help:
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+ @echo "Please use \`make <target>' where <target> is one of"
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+ @echo " html to make standalone HTML files"
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+ @echo " dirhtml to make HTML files named index.html in directories"
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+ @echo " singlehtml to make a single large HTML file"
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+ @echo " pickle to make pickle files"
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+ @echo " json to make JSON files"
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+ @echo " htmlhelp to make HTML files and a HTML help project"
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+ @echo " qthelp to make HTML files and a qthelp project"
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+ @echo " applehelp to make an Apple Help Book"
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+ @echo " devhelp to make HTML files and a Devhelp project"
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+ @echo " epub to make an epub"
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+ @echo " epub3 to make an epub3"
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+ @echo " latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter"
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+ @echo " latexpdf to make LaTeX files and run them through pdflatex"
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+ @echo " latexpdfja to make LaTeX files and run them through platex/dvipdfmx"
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+ @echo " text to make text files"
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+ @echo " man to make manual pages"
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+ @echo " texinfo to make Texinfo files"
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+ @echo " info to make Texinfo files and run them through makeinfo"
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+ @echo " gettext to make PO message catalogs"
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+ @echo " changes to make an overview of all changed/added/deprecated items"
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+ @echo " xml to make Docutils-native XML files"
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+ @echo " pseudoxml to make pseudoxml-XML files for display purposes"
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+ @echo " linkcheck to check all external links for integrity"
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+ @echo " doctest to run all doctests embedded in the documentation (if enabled)"
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+ @echo " coverage to run coverage check of the documentation (if enabled)"
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+ @echo " dummy to check syntax errors of document sources"
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+
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+ .PHONY: clean
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+ clean:
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+ rm -rf $(BUILDDIR)/* $(PAGES)
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+
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+ .PHONY: html
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+ html:
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+ $(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html
60
+ @echo
61
+ @echo "Build finished. The HTML pages are in $(BUILDDIR)/html."
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+
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+ .PHONY: dirhtml
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+ dirhtml: $(PAGES)
65
+ $(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml
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+ @echo
67
+ @echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml."
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+
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+ .PHONY: singlehtml
70
+ singlehtml:
71
+ $(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml
72
+ @echo
73
+ @echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml."
74
+
75
+ .PHONY: pickle
76
+ pickle:
77
+ $(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle
78
+ @echo
79
+ @echo "Build finished; now you can process the pickle files."
80
+
81
+ .PHONY: json
82
+ json:
83
+ $(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json
84
+ @echo
85
+ @echo "Build finished; now you can process the JSON files."
86
+
87
+ .PHONY: htmlhelp
88
+ htmlhelp:
89
+ $(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp
90
+ @echo
91
+ @echo "Build finished; now you can run HTML Help Workshop with the" \
92
+ ".hhp project file in $(BUILDDIR)/htmlhelp."
93
+
94
+ .PHONY: qthelp
95
+ qthelp:
96
+ $(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp
97
+ @echo
98
+ @echo "Build finished; now you can run "qcollectiongenerator" with the" \
99
+ ".qhcp project file in $(BUILDDIR)/qthelp, like this:"
100
+ @echo "# qcollectiongenerator $(BUILDDIR)/qthelp/cornerpy.qhcp"
101
+ @echo "To view the help file:"
102
+ @echo "# assistant -collectionFile $(BUILDDIR)/qthelp/cornerpy.qhc"
103
+
104
+ .PHONY: applehelp
105
+ applehelp:
106
+ $(SPHINXBUILD) -b applehelp $(ALLSPHINXOPTS) $(BUILDDIR)/applehelp
107
+ @echo
108
+ @echo "Build finished. The help book is in $(BUILDDIR)/applehelp."
109
+ @echo "N.B. You won't be able to view it unless you put it in" \
110
+ "~/Library/Documentation/Help or install it in your application" \
111
+ "bundle."
112
+
113
+ .PHONY: devhelp
114
+ devhelp:
115
+ $(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp
116
+ @echo
117
+ @echo "Build finished."
118
+ @echo "To view the help file:"
119
+ @echo "# mkdir -p $$HOME/.local/share/devhelp/cornerpy"
120
+ @echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/cornerpy"
121
+ @echo "# devhelp"
122
+
123
+ .PHONY: epub
124
+ epub:
125
+ $(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub
126
+ @echo
127
+ @echo "Build finished. The epub file is in $(BUILDDIR)/epub."
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+
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+ .PHONY: epub3
130
+ epub3:
131
+ $(SPHINXBUILD) -b epub3 $(ALLSPHINXOPTS) $(BUILDDIR)/epub3
132
+ @echo
133
+ @echo "Build finished. The epub3 file is in $(BUILDDIR)/epub3."
134
+
135
+ .PHONY: latex
136
+ latex:
137
+ $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
138
+ @echo
139
+ @echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex."
140
+ @echo "Run \`make' in that directory to run these through (pdf)latex" \
141
+ "(use \`make latexpdf' here to do that automatically)."
142
+
143
+ .PHONY: latexpdf
144
+ latexpdf:
145
+ $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
146
+ @echo "Running LaTeX files through pdflatex..."
147
+ $(MAKE) -C $(BUILDDIR)/latex all-pdf
148
+ @echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."
149
+
150
+ .PHONY: latexpdfja
151
+ latexpdfja:
152
+ $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
153
+ @echo "Running LaTeX files through platex and dvipdfmx..."
154
+ $(MAKE) -C $(BUILDDIR)/latex all-pdf-ja
155
+ @echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."
156
+
157
+ .PHONY: text
158
+ text:
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+ $(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text
160
+ @echo
161
+ @echo "Build finished. The text files are in $(BUILDDIR)/text."
162
+
163
+ .PHONY: man
164
+ man:
165
+ $(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man
166
+ @echo
167
+ @echo "Build finished. The manual pages are in $(BUILDDIR)/man."
168
+
169
+ .PHONY: texinfo
170
+ texinfo:
171
+ $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
172
+ @echo
173
+ @echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo."
174
+ @echo "Run \`make' in that directory to run these through makeinfo" \
175
+ "(use \`make info' here to do that automatically)."
176
+
177
+ .PHONY: info
178
+ info:
179
+ $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
180
+ @echo "Running Texinfo files through makeinfo..."
181
+ make -C $(BUILDDIR)/texinfo info
182
+ @echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo."
183
+
184
+ .PHONY: gettext
185
+ gettext:
186
+ $(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale
187
+ @echo
188
+ @echo "Build finished. The message catalogs are in $(BUILDDIR)/locale."
189
+
190
+ .PHONY: changes
191
+ changes:
192
+ $(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes
193
+ @echo
194
+ @echo "The overview file is in $(BUILDDIR)/changes."
195
+
196
+ .PHONY: linkcheck
197
+ linkcheck:
198
+ $(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck
199
+ @echo
200
+ @echo "Link check complete; look for any errors in the above output " \
201
+ "or in $(BUILDDIR)/linkcheck/output.txt."
202
+
203
+ .PHONY: doctest
204
+ doctest:
205
+ $(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest
206
+ @echo "Testing of doctests in the sources finished, look at the " \
207
+ "results in $(BUILDDIR)/doctest/output.txt."
208
+
209
+ .PHONY: coverage
210
+ coverage:
211
+ $(SPHINXBUILD) -b coverage $(ALLSPHINXOPTS) $(BUILDDIR)/coverage
212
+ @echo "Testing of coverage in the sources finished, look at the " \
213
+ "results in $(BUILDDIR)/coverage/python.txt."
214
+
215
+ .PHONY: xml
216
+ xml:
217
+ $(SPHINXBUILD) -b xml $(ALLSPHINXOPTS) $(BUILDDIR)/xml
218
+ @echo
219
+ @echo "Build finished. The XML files are in $(BUILDDIR)/xml."
220
+
221
+ .PHONY: pseudoxml
222
+ pseudoxml:
223
+ $(SPHINXBUILD) -b pseudoxml $(ALLSPHINXOPTS) $(BUILDDIR)/pseudoxml
224
+ @echo
225
+ @echo "Build finished. The pseudo-XML files are in $(BUILDDIR)/pseudoxml."
226
+
227
+ .PHONY: dummy
228
+ dummy:
229
+ $(SPHINXBUILD) -b dummy $(ALLSPHINXOPTS) $(BUILDDIR)/dummy
230
+ @echo
231
+ @echo "Build finished. Dummy builder generates no files."
Binary file
@@ -0,0 +1,14 @@
1
+ .. module:: corner
2
+
3
+ Detailed API documentation
4
+ ==========================
5
+
6
+ The main user-facing function is :func:`corner.corner` but the lower level
7
+ functions :func:`corner.hist2d` and :func:`corner.quantile` are also
8
+ documented here.
9
+
10
+ .. autofunction:: corner.corner
11
+ .. autofunction:: corner.hist2d
12
+ .. autofunction:: corner.quantile
13
+ .. autofunction:: corner.overplot_lines
14
+ .. autofunction:: corner.overplot_points
@@ -0,0 +1,44 @@
1
+ # -*- coding: utf-8 -*-
2
+
3
+ import corner
4
+
5
+ extensions = [
6
+ "sphinx.ext.autodoc",
7
+ "sphinx.ext.mathjax",
8
+ "sphinx.ext.napoleon",
9
+ "myst_nb",
10
+ "IPython.sphinxext.ipython_console_highlighting",
11
+ ]
12
+ master_doc = "index"
13
+
14
+ # General information about the project.
15
+ project = "corner.py"
16
+ copyright = "2013-2021 Dan Foreman-Mackey & contributors"
17
+
18
+ version = corner.__version__
19
+ release = corner.__version__
20
+
21
+ exclude_patterns = ["_build"]
22
+ html_theme = "sphinx_book_theme"
23
+ html_title = "corner.py"
24
+ html_static_path = ["_static"]
25
+ html_show_sourcelink = False
26
+ html_theme_options = {
27
+ "path_to_docs": "docs",
28
+ "repository_url": "https://github.com/dfm/corner.py",
29
+ "repository_branch": "main",
30
+ "launch_buttons": {
31
+ "binderhub_url": "https://mybinder.org",
32
+ "colab_url": "https://colab.research.google.com/",
33
+ "notebook_interface": "jupyterlab",
34
+ },
35
+ "use_edit_page_button": True,
36
+ "use_issues_button": True,
37
+ "use_repository_button": True,
38
+ "use_download_button": True,
39
+ }
40
+ html_baseurl = "https://corner.readthedocs.io/en/latest/"
41
+ nb_execution_mode = "force"
42
+
43
+ # download notebooks as .ipynb and not as .ipynb.txt
44
+ html_sourcelink_suffix = ""
@@ -0,0 +1,69 @@
1
+ # corner.py
2
+
3
+ _Make some beautiful corner plots._
4
+
5
+ ```{admonition} Corner plot /ˈkôrnər plät/ (noun):
6
+ :class: tip
7
+
8
+ An illustrative representation of different projections of samples in
9
+ high dimensional spaces. It is awesome. I promise.
10
+ _Synonyms: scatterplot matrix, pairs plot, draftsman's display_
11
+ ```
12
+
13
+ This Python module uses [matplotlib](https://matplotlib.org/) to visualize
14
+ multidimensional samples using a scatterplot matrix.
15
+ In these visualizations, each one- and two-dimensional projection of the
16
+ sample is plotted to reveal covariances.
17
+ _corner_ was originally conceived to display the results of Markov Chain
18
+ Monte Carlo simulations and the defaults are chosen with this application in
19
+ mind but it can be used for displaying many qualitatively different samples.
20
+
21
+ Development of _corner_ happens [on GitHub](https://github.com/dfm/corner.py) so you can [raise any issues you have there](https://github.com/dfm/corner.py/issues).
22
+ _corner_ has been used extensively in the astronomical literature and it [has occasionally been cited](https://ui.adsabs.harvard.edu/abs/2016JOSS....1...24F/citations)
23
+ as `corner.py` or using its previous name `triangle.py`.
24
+
25
+ [![Tests](https://github.com/dfm/corner.py/workflows/Tests/badge.svg?style=flat)](https://github.com/dfm/corner.py/actions)
26
+ [![License](https://img.shields.io/badge/license-BSD-blue.svg?style=flat)](https://github.com/dfm/corner.py/blob/main/LICENSE)
27
+ [![DOI](https://zenodo.org/badge/4729/dfm/corner.py.svg?style=flat)](https://zenodo.org/badge/latestdoi/4729/dfm/corner.py)
28
+ [![Paper](https://joss.theoj.org/papers/10.21105/joss.00024/status.svg?style=flat)](http://dx.doi.org/10.21105/joss.00024)
29
+
30
+ ## Documentation
31
+
32
+ ```{toctree}
33
+ :maxdepth: 2
34
+
35
+ install
36
+ pages/quickstart
37
+ pages/sigmas
38
+ pages/custom
39
+ pages/arviz
40
+ api
41
+ ```
42
+
43
+ ## Attribution
44
+
45
+ If you make use of this code, please cite [the JOSS paper](https://dx.doi.org/10.21105/joss.00024):
46
+
47
+ ```tex
48
+ @article{corner,
49
+ doi = {10.21105/joss.00024},
50
+ url = {https://doi.org/10.21105/joss.00024},
51
+ year = {2016},
52
+ month = {jun},
53
+ publisher = {The Open Journal},
54
+ volume = {1},
55
+ number = {2},
56
+ pages = {24},
57
+ author = {Daniel Foreman-Mackey},
58
+ title = {corner.py: Scatterplot matrices in Python},
59
+ journal = {The Journal of Open Source Software}
60
+ }
61
+ ```
62
+
63
+ ## Authors & License
64
+
65
+ Copyright 2013-2021 Dan Foreman-Mackey
66
+
67
+ Built by [Dan Foreman-Mackey](https://github.com/dfm) and contributors (see
68
+ [the contribution graph](https://github.com/dfm/corner.py/graphs/contributors) for the most
69
+ up to date list). Licensed under the 2-clause BSD license (see `LICENSE`).
@@ -0,0 +1,58 @@
1
+ .. _install:
2
+
3
+ Installation
4
+ ============
5
+
6
+ Dependencies
7
+ ------------
8
+
9
+ corner.py depends on ``matplotlib``, ``numpy``, and optionally ``scipy``. You
10
+ can install these using your favorite Python package manager and I would
11
+ recommend `conda <http://conda.pydata.org/docs/>`_ if you don't already have
12
+ an opinion.
13
+
14
+ Using pip
15
+ ---------
16
+
17
+ The easiest way to install the most recent stable version of ``corner`` is
18
+ with `pip <http://www.pip-installer.org/>`_:
19
+
20
+ .. code-block:: bash
21
+
22
+ python -m pip install corner
23
+
24
+
25
+ From source
26
+ -----------
27
+
28
+ Alternatively, you can get the source by downloading a `tarball
29
+ <https://github.com/dfm/corner.py/tarball/master>`_ or cloning `the git
30
+ repository <https://github.com/dfm/corner.py>`_:
31
+
32
+ .. code-block:: bash
33
+
34
+ git clone https://github.com/dfm/corner.py.git
35
+
36
+ Once you've downloaded the source, you can navigate into the root source
37
+ directory and run:
38
+
39
+ .. code-block:: bash
40
+
41
+ python -m pip install .
42
+
43
+
44
+ Tests
45
+ -----
46
+
47
+ If you installed from source, you can run the unit tests, but know that
48
+ plotting-based tests can be pretty brittle. From the root of the
49
+ source directory, run:
50
+
51
+ .. code-block:: bash
52
+
53
+ python -m pip install nox
54
+ python -m nox -s tests-PYTHON_VERSION
55
+
56
+ Where ``PYTHON_VERSION`` is the version of Python you're using (e.g.
57
+ ``3.10``) This might take a few minutes but you shouldn't get any errors
58
+ if all went as planned.