cool-seq-tool 0.9.0__tar.gz → 0.9.1__tar.gz

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Files changed (62) hide show
  1. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/PKG-INFO +1 -1
  2. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/mappers/mane_transcript.py +1 -1
  3. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool.egg-info/PKG-INFO +1 -1
  4. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/tests/mappers/test_mane_transcript.py +10 -0
  5. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/.coveragerc +0 -0
  6. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/.github/ISSUE_TEMPLATE/bug-report.yaml +0 -0
  7. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/.github/ISSUE_TEMPLATE/feature-request.yaml +0 -0
  8. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/.github/workflows/checks.yaml +0 -0
  9. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/.github/workflows/pr-priority-label.yaml +0 -0
  10. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/.github/workflows/release.yml +0 -0
  11. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/.github/workflows/stale.yaml +0 -0
  12. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/.gitignore +0 -0
  13. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/.pre-commit-config.yaml +0 -0
  14. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/.readthedocs.yaml +0 -0
  15. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/CITATION.cff +0 -0
  16. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/LICENSE +0 -0
  17. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/README.md +0 -0
  18. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/docs/Makefile +0 -0
  19. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/docs/make.bat +0 -0
  20. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/docs/source/_static/img/biomart.png +0 -0
  21. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/docs/source/_templates/module_summary.rst +0 -0
  22. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/docs/source/changelog.rst +0 -0
  23. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/docs/source/conf.py +0 -0
  24. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/docs/source/contributing.rst +0 -0
  25. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/docs/source/index.rst +0 -0
  26. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/docs/source/install.rst +0 -0
  27. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/docs/source/license.rst +0 -0
  28. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/docs/source/reference/index.rst +0 -0
  29. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/docs/source/transcript_selection.rst +0 -0
  30. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/docs/source/usage.rst +0 -0
  31. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/pyproject.toml +0 -0
  32. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/setup.cfg +0 -0
  33. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/__init__.py +0 -0
  34. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/app.py +0 -0
  35. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/handlers/__init__.py +0 -0
  36. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/handlers/seqrepo_access.py +0 -0
  37. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/mappers/__init__.py +0 -0
  38. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/mappers/alignment.py +0 -0
  39. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/mappers/exon_genomic_coords.py +0 -0
  40. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/mappers/liftover.py +0 -0
  41. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/resources/__init__.py +0 -0
  42. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/resources/data_files.py +0 -0
  43. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/resources/status.py +0 -0
  44. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/resources/transcript_mapping.tsv +0 -0
  45. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/schemas.py +0 -0
  46. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/sources/__init__.py +0 -0
  47. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/sources/mane_transcript_mappings.py +0 -0
  48. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/sources/transcript_mappings.py +0 -0
  49. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/sources/uta_database.py +0 -0
  50. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/utils.py +0 -0
  51. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool.egg-info/SOURCES.txt +0 -0
  52. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool.egg-info/dependency_links.txt +0 -0
  53. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool.egg-info/requires.txt +0 -0
  54. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool.egg-info/top_level.txt +0 -0
  55. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/tests/conftest.py +0 -0
  56. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/tests/handlers/test_seqrepo_access.py +0 -0
  57. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/tests/mappers/test_alignment.py +0 -0
  58. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/tests/mappers/test_exon_genomic_coords.py +0 -0
  59. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/tests/mappers/test_liftover.py +0 -0
  60. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/tests/sources/test_mane_transcript_mappings.py +0 -0
  61. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/tests/sources/test_uta_database.py +0 -0
  62. {cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/tests/test_utils.py +0 -0
{cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: cool_seq_tool
3
- Version: 0.9.0
3
+ Version: 0.9.1
4
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  Summary: Common Operation on Lots of Sequences Tool
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  Author: Kori Kuzma, James Stevenson, Katie Stahl, Alex Wagner
6
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  License: MIT License
{cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool/mappers/mane_transcript.py RENAMED
@@ -1102,7 +1102,7 @@ class ManeTranscript:
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1102
  c_pos[1],
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  AnnotationLayer.CDNA,
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  ref=ref,
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- gene=g["gene"],
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+ gene=g.gene,
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  coordinate_type=coordinate_type,
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  mane_transcripts=mane_transcripts,
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  )
{cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/src/cool_seq_tool.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: cool_seq_tool
3
- Version: 0.9.0
3
+ Version: 0.9.1
4
4
  Summary: Common Operation on Lots of Sequences Tool
5
5
  Author: Kori Kuzma, James Stevenson, Katie Stahl, Alex Wagner
6
6
  License: MIT License
{cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/tests/mappers/test_mane_transcript.py RENAMED
@@ -926,6 +926,16 @@ async def test_valid(test_mane_transcript):
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  )
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  assert resp
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+ # issue-394
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+ resp = await test_mane_transcript.get_mane_transcript(
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+ "ENST00000496384.7",
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+ 1799,
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+ 1799,
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+ AnnotationLayer.CDNA,
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+ try_longest_compatible=True,
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+ )
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+ assert resp
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+
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939
 
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  @pytest.mark.asyncio()
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  async def test_no_matches(test_mane_transcript):
{cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/.coveragerc RENAMED
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{cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/.gitignore RENAMED
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{cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/LICENSE RENAMED
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{cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/README.md RENAMED
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{cool_seq_tool-0.9.0 → cool_seq_tool-0.9.1}/setup.cfg RENAMED
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