consenrich 0.6.3b1__tar.gz → 0.7.0b1__tar.gz

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Files changed (45) hide show
  1. {consenrich-0.6.3b1/src/consenrich.egg-info → consenrich-0.7.0b1}/PKG-INFO +3 -3
  2. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/README.md +2 -2
  3. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/pyproject.toml +1 -1
  4. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/setup.py +1 -1
  5. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/cconsenrich.c +404 -404
  6. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/consenrich.py +28 -10
  7. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/core.py +25 -12
  8. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/detrorm.py +12 -3
  9. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/matching.py +5 -5
  10. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/misc_util.py +29 -0
  11. {consenrich-0.6.3b1 → consenrich-0.7.0b1/src/consenrich.egg-info}/PKG-INFO +3 -3
  12. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/tests/test_core.py +23 -1
  13. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/LICENSE +0 -0
  14. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/MANIFEST.in +0 -0
  15. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/setup.cfg +0 -0
  16. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/__init__.py +0 -0
  17. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/cconsenrich.pyx +0 -0
  18. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/constants.py +0 -0
  19. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/ce10.sizes +0 -0
  20. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/ce10_blacklist.bed +0 -0
  21. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/ce10_sparse.bed +0 -0
  22. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/ce11.sizes +0 -0
  23. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/ce11_blacklist.bed +0 -0
  24. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/ce11_sparse.bed +0 -0
  25. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/dm6.sizes +0 -0
  26. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/dm6_blacklist.bed +0 -0
  27. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/dm6_sparse.bed +0 -0
  28. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/hg19.sizes +0 -0
  29. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/hg19_blacklist.bed +0 -0
  30. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/hg19_sparse.bed +0 -0
  31. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/hg38.sizes +0 -0
  32. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/hg38_blacklist.bed +0 -0
  33. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/hg38_sparse.bed +0 -0
  34. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/mm10.sizes +0 -0
  35. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/mm10_blacklist.bed +0 -0
  36. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/mm10_sparse.bed +0 -0
  37. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/mm39.sizes +0 -0
  38. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/mm39_blacklist.bed +0 -0
  39. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich/data/mm39_sparse.bed +0 -0
  40. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich.egg-info/SOURCES.txt +0 -0
  41. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich.egg-info/dependency_links.txt +0 -0
  42. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich.egg-info/entry_points.txt +0 -0
  43. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich.egg-info/not-zip-safe +0 -0
  44. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich.egg-info/requires.txt +0 -0
  45. {consenrich-0.6.3b1 → consenrich-0.7.0b1}/src/consenrich.egg-info/top_level.txt +0 -0
{consenrich-0.6.3b1/src/consenrich.egg-info → consenrich-0.7.0b1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: consenrich
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- Version: 0.6.3b1
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+ Version: 0.7.0b1
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  Summary: Genome-wide estimation of signals hidden in noisy multi-sample HTS datasets
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  Author-email: "Nolan H. Hamilton" <nolan.hamilton@unc.edu>
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  Requires-Python: >=3.11
@@ -43,8 +43,8 @@ Consenrich is an adaptive linear state estimator that yields genome-wide, uncert
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  Special emphasis is placed on computational efficiency, model interpretability, and practical utility for downstream tasks that require well-resolved genome-wide signal estimates and uncertainty quantification across samples, such as:
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- * Consensus detection of open chromatin regions, TF footprints, nucleosome occupancy, histone modification
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- * Candidate selection and boundary refinement for differential analyses, fine-mapping, reporter assays, etc.
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+ * Consensus detection of open chromatin regions, TF binding, histone modification, etc.
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+ * Candidate prioritization for differential analyses, functional validation, integrative modeling, etc.
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  [**See the Documentation**](https://nolan-h-hamilton.github.io/Consenrich/) for usage examples, installation details, configuration options, and an API reference.
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{consenrich-0.6.3b1 → consenrich-0.7.0b1}/README.md RENAMED
@@ -9,8 +9,8 @@ Consenrich is an adaptive linear state estimator that yields genome-wide, uncert
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  Special emphasis is placed on computational efficiency, model interpretability, and practical utility for downstream tasks that require well-resolved genome-wide signal estimates and uncertainty quantification across samples, such as:
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- * Consensus detection of open chromatin regions, TF footprints, nucleosome occupancy, histone modification
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- * Candidate selection and boundary refinement for differential analyses, fine-mapping, reporter assays, etc.
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+ * Consensus detection of open chromatin regions, TF binding, histone modification, etc.
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+ * Candidate prioritization for differential analyses, functional validation, integrative modeling, etc.
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  [**See the Documentation**](https://nolan-h-hamilton.github.io/Consenrich/) for usage examples, installation details, configuration options, and an API reference.
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{consenrich-0.6.3b1 → consenrich-0.7.0b1}/pyproject.toml RENAMED
@@ -10,7 +10,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "consenrich"
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- version = "0.6.3b1"
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+ version = "0.7.0b1"
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  description = "Genome-wide estimation of signals hidden in noisy multi-sample HTS datasets"
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  authors = [{ name="Nolan H. Hamilton", email="nolan.hamilton@unc.edu" }]
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  readme = "README.md"
{consenrich-0.6.3b1 → consenrich-0.7.0b1}/setup.py RENAMED
@@ -36,7 +36,7 @@ extensions = [
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  setup(
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  name="consenrich",
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- version="0.6.3b1",
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+ version="0.7.0b1",
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  packages=find_packages(where="src"),
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  include_package_data=True,
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  package_dir={"": "src"},