conexus 2.3.3__tar.gz → 2.3.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (359) hide show
  1. {conexus-2.3.3 → conexus-2.3.4}/.claude-plugin/marketplace.json +1 -1
  2. {conexus-2.3.3 → conexus-2.3.4}/CHANGELOG.md +13 -4
  3. {conexus-2.3.3 → conexus-2.3.4}/PKG-INFO +4 -3
  4. {conexus-2.3.3 → conexus-2.3.4}/docs/historical/plans/2026-02-23-rdr-workflow-skills-design.md +40 -40
  5. {conexus-2.3.3 → conexus-2.3.4}/docs/historical/plans/2026-02-23-rdr-workflow-skills-impl-plan.md +49 -49
  6. {conexus-2.3.3 → conexus-2.3.4}/docs/memory-and-tasks.md +2 -2
  7. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-08-rdr-025-language-agnostic-agents-impl-plan.md +14 -14
  8. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/post-mortem/002-t2-status-synchronization.md +4 -4
  9. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/post-mortem/012-pdfplumber-extraction-tier.md +2 -2
  10. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/post-mortem/023-agent-tool-permissions-audit.md +1 -1
  11. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-001-rdr-process-validation.md +6 -6
  12. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-002-t2-status-synchronization.md +71 -71
  13. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-024-rdr-process-guardrails.md +4 -4
  14. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-025-language-agnostic-agents.md +5 -5
  15. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-033-pdf-agent-nx-index-alignment.md +3 -3
  16. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-036-post-accept-planning-workflow.md +21 -21
  17. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr-nexus-integration.md +7 -7
  18. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr-overview.md +7 -7
  19. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr-templates.md +2 -2
  20. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr-workflow.md +24 -24
  21. {conexus-2.3.3 → conexus-2.3.4}/nx/CHANGELOG.md +12 -6
  22. {conexus-2.3.3 → conexus-2.3.4}/nx/README.md +1 -1
  23. {conexus-2.3.3 → conexus-2.3.4}/pyproject.toml +4 -3
  24. {conexus-2.3.3 → conexus-2.3.4}/src/nexus/db/t3.py +2 -3
  25. {conexus-2.3.3 → conexus-2.3.4}/src/nexus/doc_indexer.py +7 -1
  26. {conexus-2.3.3 → conexus-2.3.4}/src/nexus/indexer.py +7 -1
  27. {conexus-2.3.3 → conexus-2.3.4}/src/nexus/retry.py +1 -1
  28. {conexus-2.3.3 → conexus-2.3.4}/src/nexus/scoring.py +7 -1
  29. {conexus-2.3.3 → conexus-2.3.4}/uv.lock +11 -897
  30. {conexus-2.3.3 → conexus-2.3.4}/.beads/.gitignore +0 -0
  31. {conexus-2.3.3 → conexus-2.3.4}/.beads/README.md +0 -0
  32. {conexus-2.3.3 → conexus-2.3.4}/.beads/config.yaml +0 -0
  33. {conexus-2.3.3 → conexus-2.3.4}/.beads/hooks/post-checkout +0 -0
  34. {conexus-2.3.3 → conexus-2.3.4}/.beads/hooks/post-merge +0 -0
  35. {conexus-2.3.3 → conexus-2.3.4}/.beads/hooks/pre-commit +0 -0
  36. {conexus-2.3.3 → conexus-2.3.4}/.beads/hooks/pre-push +0 -0
  37. {conexus-2.3.3 → conexus-2.3.4}/.beads/hooks/prepare-commit-msg +0 -0
  38. {conexus-2.3.3 → conexus-2.3.4}/.beads/interactions.jsonl +0 -0
  39. {conexus-2.3.3 → conexus-2.3.4}/.beads/issues.jsonl +0 -0
  40. {conexus-2.3.3 → conexus-2.3.4}/.beads/metadata.json +0 -0
  41. {conexus-2.3.3 → conexus-2.3.4}/.claude/skills/release.md +0 -0
  42. {conexus-2.3.3 → conexus-2.3.4}/.devcontainer/Dockerfile +0 -0
  43. {conexus-2.3.3 → conexus-2.3.4}/.devcontainer/devcontainer.json +0 -0
  44. {conexus-2.3.3 → conexus-2.3.4}/.dockerignore +0 -0
  45. {conexus-2.3.3 → conexus-2.3.4}/.env.example +0 -0
  46. {conexus-2.3.3 → conexus-2.3.4}/.gitattributes +0 -0
  47. {conexus-2.3.3 → conexus-2.3.4}/.github/workflows/ci.yml +0 -0
  48. {conexus-2.3.3 → conexus-2.3.4}/.github/workflows/release.yml +0 -0
  49. {conexus-2.3.3 → conexus-2.3.4}/.gitignore +0 -0
  50. {conexus-2.3.3 → conexus-2.3.4}/.markdownlint.json +0 -0
  51. {conexus-2.3.3 → conexus-2.3.4}/AGENTS.md +0 -0
  52. {conexus-2.3.3 → conexus-2.3.4}/CLAUDE.md +0 -0
  53. {conexus-2.3.3 → conexus-2.3.4}/Formula/nx.rb +0 -0
  54. {conexus-2.3.3 → conexus-2.3.4}/LICENSE +0 -0
  55. {conexus-2.3.3 → conexus-2.3.4}/README.md +0 -0
  56. {conexus-2.3.3 → conexus-2.3.4}/docs/README.md +0 -0
  57. {conexus-2.3.3 → conexus-2.3.4}/docs/architecture.md +0 -0
  58. {conexus-2.3.3 → conexus-2.3.4}/docs/cli-reference.md +0 -0
  59. {conexus-2.3.3 → conexus-2.3.4}/docs/configuration.md +0 -0
  60. {conexus-2.3.3 → conexus-2.3.4}/docs/contributing.md +0 -0
  61. {conexus-2.3.3 → conexus-2.3.4}/docs/getting-started.md +0 -0
  62. {conexus-2.3.3 → conexus-2.3.4}/docs/historical/README.md +0 -0
  63. {conexus-2.3.3 → conexus-2.3.4}/docs/historical/architecture.md +0 -0
  64. {conexus-2.3.3 → conexus-2.3.4}/docs/historical/plans/2026-02-24-nx-plugin-v0.4.0.md +0 -0
  65. {conexus-2.3.3 → conexus-2.3.4}/docs/historical/plans/2026-02-24-smart-repo-indexing-design.md +0 -0
  66. {conexus-2.3.3 → conexus-2.3.4}/docs/historical/plans/2026-02-24-smart-repo-indexing-impl-plan.md +0 -0
  67. {conexus-2.3.3 → conexus-2.3.4}/docs/historical/spec.md +0 -0
  68. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-02-28-rdr-004-four-store-cloud-design.md +0 -0
  69. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-02-28-rdr-004-four-store-cloud-impl-plan.md +0 -0
  70. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-01-dry-run-pdf-design.md +0 -0
  71. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-01-dry-run-pdf-impl-plan.md +0 -0
  72. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-01-pdfplumber-tier-design.md +0 -0
  73. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-01-rc10-1.0.0-readiness-design.md +0 -0
  74. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-01-rc10-critique-findings.md +0 -0
  75. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-02-classifier-skip-design.md +0 -0
  76. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-03-chunk-byte-cap-design.md +0 -0
  77. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-03-chunk-byte-cap-impl-plan.md +0 -0
  78. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-03-force-reindex-impl-plan.md +0 -0
  79. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-03-rdr017-phase2-cli-monitor-design.md +0 -0
  80. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-03-rdr017-phase2-cli-monitor-impl-plan.md +0 -0
  81. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-03-rdr018-git-hooks-impl-plan.md +0 -0
  82. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-04-doc-ux-polish-design.md +0 -0
  83. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-04-rdr-doc-polish-design.md +0 -0
  84. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-07-rdr-023-agent-tool-permissions-design.md +0 -0
  85. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-07-rdr-023-agent-tool-permissions-impl-plan.md +0 -0
  86. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-09-rdr-027-search-ux-impl-plan.md +0 -0
  87. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-09-rdr-028-language-registry-impl-plan.md +0 -0
  88. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-09-rdr-029-pipeline-versioning-impl-plan.md +0 -0
  89. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-09-rdr-030-reliability-hardening-impl-plan.md +0 -0
  90. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-11-rdr-034-mcp-server-impl-plan.md +0 -0
  91. {conexus-2.3.3 → conexus-2.3.4}/docs/plans/2026-03-21-rdr039-phase2-hooks-impl-plan.md +0 -0
  92. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/README.md +0 -0
  93. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/post-mortem/001-rdr-process-validation.md +0 -0
  94. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/post-mortem/010-t1-http-server.md +0 -0
  95. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/post-mortem/011-pdf-ingest-test-coverage.md +0 -0
  96. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/post-mortem/014-knowledge-base-retrieval-quality.md +0 -0
  97. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/post-mortem/015-indexing-pipeline-rethink.md +0 -0
  98. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/post-mortem/016-ast-chunk-line-range-bug.md +0 -0
  99. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/post-mortem/017-indexing-progress-reporting.md +0 -0
  100. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/post-mortem/018-replace-serve-with-git-hooks.md +0 -0
  101. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/post-mortem/024-rdr-process-guardrails.md +0 -0
  102. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/post-mortem/028-language-registry-unification.md +0 -0
  103. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/post-mortem/029-pipeline-versioning.md +0 -0
  104. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/post-mortem/cce-query-model-mismatch.md +0 -0
  105. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-004-four-store-architecture.md +0 -0
  106. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-005-chromadb-cloud-quota-enforcement.md +0 -0
  107. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-006-chunk-size-configuration.md +0 -0
  108. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-007-claude-adoption-session-context-and-search-guidance.md +0 -0
  109. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-008-nx-workflow-integration.md +0 -0
  110. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-009-remove-agentic-and-answer-flags.md +0 -0
  111. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-010-t1-scratch-persistent-bounded-store.md +0 -0
  112. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-011-pdf-ingest-test-coverage.md +0 -0
  113. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-012-pdfplumber-extraction-tier.md +0 -0
  114. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-013-remove-nx-pm-layer.md +0 -0
  115. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-014-knowledge-base-retrieval-quality.md +0 -0
  116. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-015-indexing-pipeline-rethink.md +0 -0
  117. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-016-ast-chunk-line-range-bug.md +0 -0
  118. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-017-indexing-progress-reporting.md +0 -0
  119. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-018-replace-serve-with-git-hooks.md +0 -0
  120. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-019-chromadb-transient-retry.md +0 -0
  121. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-020-voyage-chromadb-read-timeout.md +0 -0
  122. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-021-docling-pdf-extraction.md +0 -0
  123. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-022-memory-delete-command.md +0 -0
  124. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-023-agent-tool-permissions-audit.md +0 -0
  125. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-026-hybrid-search-fusion.md +0 -0
  126. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-027-search-results-ux.md +0 -0
  127. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-028-code-search-recall.md +0 -0
  128. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-029-pipeline-versioning.md +0 -0
  129. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-030-reliability-hardening.md +0 -0
  130. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-031-collection-portability.md +0 -0
  131. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-032-indexer-decomposition.md +0 -0
  132. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-034-mcp-server-agent-storage.md +0 -0
  133. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-035-plugin-agent-mcp-tool-access.md +0 -0
  134. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-037-t3-database-consolidation.md +0 -0
  135. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-038-local-t3-backend.md +0 -0
  136. {conexus-2.3.3 → conexus-2.3.4}/docs/rdr/rdr-039-claude-code-framework-alignment.md +0 -0
  137. {conexus-2.3.3 → conexus-2.3.4}/docs/repo-indexing.md +0 -0
  138. {conexus-2.3.3 → conexus-2.3.4}/docs/storage-tiers.md +0 -0
  139. {conexus-2.3.3 → conexus-2.3.4}/nx/.mcp.json +0 -0
  140. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/_shared/CONTEXT_PROTOCOL.md +0 -0
  141. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/_shared/ERROR_HANDLING.md +0 -0
  142. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/_shared/MAINTENANCE.md +0 -0
  143. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/_shared/README.md +0 -0
  144. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/_shared/RELAY_TEMPLATE.md +0 -0
  145. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/architect-planner.md +0 -0
  146. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/code-review-expert.md +0 -0
  147. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/codebase-deep-analyzer.md +0 -0
  148. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/debugger.md +0 -0
  149. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/deep-analyst.md +0 -0
  150. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/deep-research-synthesizer.md +0 -0
  151. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/developer.md +0 -0
  152. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/knowledge-tidier.md +0 -0
  153. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/orchestrator.md +0 -0
  154. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/pdf-chromadb-processor.md +0 -0
  155. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/plan-auditor.md +0 -0
  156. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/plan-enricher.md +0 -0
  157. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/strategic-planner.md +0 -0
  158. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/substantive-critic.md +0 -0
  159. {conexus-2.3.3 → conexus-2.3.4}/nx/agents/test-validator.md +0 -0
  160. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/analyze-code.md +0 -0
  161. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/architecture.md +0 -0
  162. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/create-plan.md +0 -0
  163. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/debug.md +0 -0
  164. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/deep-analysis.md +0 -0
  165. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/enrich-plan.md +0 -0
  166. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/implement.md +0 -0
  167. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/knowledge-tidy.md +0 -0
  168. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/nx-preflight.md +0 -0
  169. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/pdf-process.md +0 -0
  170. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/plan-audit.md +0 -0
  171. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/rdr-accept.md +0 -0
  172. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/rdr-close.md +0 -0
  173. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/rdr-create.md +0 -0
  174. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/rdr-gate.md +0 -0
  175. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/rdr-list.md +0 -0
  176. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/rdr-research.md +0 -0
  177. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/rdr-show.md +0 -0
  178. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/research.md +0 -0
  179. {conexus-2.3.3 → conexus-2.3.4}/nx/commands/review-code.md +0 -0
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  "name": "nx",
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  "source": "./nx",
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  "description": "Self-hosted three-tier knowledge management with 15 specialized agents, semantic search, and RDR decision tracking for Claude Code.",
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- "version": "2.3.3"
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+ "version": "2.3.4"
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  }
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  ]
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  }
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  ## [Unreleased]
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+ ## [2.3.4] - 2026-03-23
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+
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+ ### Fixed
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+ - **Python 3.14 compatibility** — `voyageai` uses Pydantic v1 compat layer which
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+ is broken on Python ≥ 3.14. Moved `voyageai` from required to optional dependency
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+ (`pip install conexus[cloud]`). Capped `requires-python` to `<3.14` so uv/pip
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+ auto-select Python 3.13. All `import voyageai` sites guarded with clear error
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+ messages pointing to `conexus[cloud]`.
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+ - **Unprefixed skill references in docs** — all `/rdr-create`, `/rdr-close`, etc.
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+ corrected to `/nx:rdr-create`, `/nx:rdr-close` across 11 documentation files.
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+
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  ## [2.3.3] - 2026-03-23
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- crashed on Python 3.14 due to Pydantic v1 incompatibility in the voyageai SDK.
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- Import is now guarded with `try/except`; cloud mode raises a clear error, local
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- mode works without voyageai.
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+ - **Python 3.14 compatibility** (partial) guarded `import voyageai` in `t3.py`
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+ but missed `retry.py` and other import sites. Superseded by 2.3.4.
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  ## [2.3.2] - 2026-03-22
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  Metadata-Version: 2.4
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  Name: conexus
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- Version: 2.3.3
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+ Version: 2.3.4
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  Summary: Self-hosted semantic search and knowledge management for LLM-driven development
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  Project-URL: Homepage, https://github.com/Hellblazer/nexus
6
6
  Project-URL: Repository, https://github.com/Hellblazer/nexus
@@ -19,7 +19,7 @@ Classifier: Programming Language :: Python :: 3.12
19
19
  Classifier: Programming Language :: Python :: 3.13
20
20
  Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
21
21
  Classifier: Topic :: Software Development :: Libraries :: Application Frameworks
22
- Requires-Python: >=3.12
22
+ Requires-Python: <3.14,>=3.12
23
23
  Requires-Dist: chromadb>=0.6
24
24
  Requires-Dist: click>=8.1
25
25
  Requires-Dist: docling>=2.76.0
@@ -33,7 +33,8 @@ Requires-Dist: pyyaml>=6.0
33
33
  Requires-Dist: structlog>=24.0
34
34
  Requires-Dist: tqdm>=4.65
35
35
  Requires-Dist: tree-sitter-language-pack==0.7.1
36
- Requires-Dist: voyageai>=0.2
36
+ Provides-Extra: cloud
37
+ Requires-Dist: voyageai>=0.2; extra == 'cloud'
37
38
  Provides-Extra: local
38
39
  Requires-Dist: fastembed>=0.7.0; extra == 'local'
39
40
  Description-Content-Type: text/markdown
@@ -17,7 +17,7 @@ Nexus provides the data infrastructure (T2 memory, T3 semantic search, agent orc
17
17
  ### Separation of Concerns
18
18
 
19
19
  - **`nx`** = data infrastructure (store, search, index, memory)
20
- - **`/rdr-*`** = workflow orchestration as Claude Code slash command skills (live in the `nx/` plugin)
20
+ - **`/nx:rdr-*`** = workflow orchestration as Claude Code slash command skills (live in the `nx/` plugin)
21
21
  - **`bd`** = execution tracking (beads for implementation work)
22
22
 
23
23
  RDR skills invoke `nx` under the hood for persistence but present a workflow-oriented interface to the user. This keeps `nx` focused on data and avoids coupling planning methodology into the CLI.
@@ -58,19 +58,19 @@ Active RDRs live in the filesystem (for collaboration) with structured metadata
58
58
 
59
59
  **Why `docs__rdr__` not `knowledge__rdr__`:** The `docs__` namespace routes to `voyage-context-3` (Contextualized Contextual Embedding) which embeds each chunk with awareness of surrounding chunks — critical for RDRs where individual sections derive meaning from the broader document context. The `knowledge__` namespace uses the same model but `docs__` is semantically correct: RDRs are structured documents, not atomic knowledge entries.
60
60
 
61
- **T2 TTL policy:** All RDR records use `--ttl permanent`. RDRs can span months from creation to close. The default 30-day TTL would silently expire active RDR metadata, causing `/rdr-gate` to report zero assumptions and `/rdr-list` to omit active RDRs.
61
+ **T2 TTL policy:** All RDR records use `--ttl permanent`. RDRs can span months from creation to close. The default 30-day TTL would silently expire active RDR metadata, causing `/nx:rdr-gate` to report zero assumptions and `/nx:rdr-list` to omit active RDRs.
62
62
 
63
63
  **T3 title uniqueness:** T3 document IDs are derived from `sha256(collection:title)`. The T3 title must include the project prefix (e.g., `NX-003 Semantic Search Pipeline`) to guarantee uniqueness across projects that share a `docs__rdr__` collection prefix.
64
64
 
65
65
  ### Lifecycle
66
66
 
67
67
  ```
68
- /rdr-create ──author──> /rdr-research ──refine──> /rdr-gate ──pass──> /rdr-close
68
+ /nx:rdr-create ──author──> /nx:rdr-research ──refine──> /nx:rdr-gate ──pass──> /nx:rdr-close
69
69
  ^ |
70
70
  └────fail, iterate────────┘
71
71
 
72
- /rdr-show (inspect one)
73
- /rdr-list (inspect all)
72
+ /nx:rdr-show (inspect one)
73
+ /nx:rdr-list (inspect all)
74
74
  ```
75
75
 
76
76
  Status transitions: `Draft → Final → Implemented | Reverted | Abandoned | Superseded`
@@ -104,9 +104,9 @@ Future enhancement: after `check_and_reindex()`, inspect `git diff --name-only`
104
104
 
105
105
  ## Skill Specifications
106
106
 
107
- ### `/rdr-create`
107
+ ### `/nx:rdr-create`
108
108
 
109
- **Trigger:** User says "create an RDR", "new RDR", or `/rdr-create`
109
+ **Trigger:** User says "create an RDR", "new RDR", or `/nx:rdr-create`
110
110
 
111
111
  **Agent:** None — mechanical scaffolding.
112
112
 
@@ -131,9 +131,9 @@ Future enhancement: after `check_and_reindex()`, inspect `git diff --name-only`
131
131
 
132
132
  ---
133
133
 
134
- ### `/rdr-research`
134
+ ### `/nx:rdr-research`
135
135
 
136
- **Trigger:** User says "add research finding", "update RDR research", or `/rdr-research`
136
+ **Trigger:** User says "add research finding", "update RDR research", or `/nx:rdr-research`
137
137
 
138
138
  **Agent:** `deep-research-synthesizer` for gathering evidence. `codebase-deep-analyzer` for code-specific questions.
139
139
 
@@ -165,9 +165,9 @@ Future enhancement: after `check_and_reindex()`, inspect `git diff --name-only`
165
165
 
166
166
  ---
167
167
 
168
- ### `/rdr-gate`
168
+ ### `/nx:rdr-gate`
169
169
 
170
- **Trigger:** User says "gate this RDR", "finalization check", or `/rdr-gate`
170
+ **Trigger:** User says "gate this RDR", "finalization check", or `/nx:rdr-gate`
171
171
 
172
172
  **Agent:** `substantive-critic` for Layer 3 AI critique.
173
173
 
@@ -209,9 +209,9 @@ Future enhancement: after `check_and_reindex()`, inspect `git diff --name-only`
209
209
 
210
210
  ---
211
211
 
212
- ### `/rdr-close`
212
+ ### `/nx:rdr-close`
213
213
 
214
- **Trigger:** User says "close this RDR", "RDR done", or `/rdr-close`
214
+ **Trigger:** User says "close this RDR", "RDR done", or `/nx:rdr-close`
215
215
 
216
216
  **Agents:**
217
217
  - `knowledge-tidier` (Haiku) — archives post-mortem to T3 (post-mortem only; bead creation done directly by skill)
@@ -239,7 +239,7 @@ Future enhancement: after `check_and_reindex()`, inspect `git diff --name-only`
239
239
  - T2 tracks an `archived: false` flag that can be retried independently
240
240
  - Each step emits clear status so a failure is diagnosable
241
241
  - The skill reports which steps completed and which failed
242
- - Failed steps can be retried by re-running `/rdr-close` (idempotent: checks T2 state before repeating completed steps)
242
+ - Failed steps can be retried by re-running `/nx:rdr-close` (idempotent: checks T2 state before repeating completed steps)
243
243
 
244
244
  **If Reverted or Abandoned:**
245
245
  1. Prompt for reason (free text)
@@ -261,9 +261,9 @@ Future enhancement: after `check_and_reindex()`, inspect `git diff --name-only`
261
261
 
262
262
  ---
263
263
 
264
- ### `/rdr-show`
264
+ ### `/nx:rdr-show`
265
265
 
266
- **Trigger:** User says "show RDR", or `/rdr-show`
266
+ **Trigger:** User says "show RDR", or `/nx:rdr-show`
267
267
 
268
268
  **Agent:** None — read-only display.
269
269
 
@@ -279,9 +279,9 @@ Future enhancement: after `check_and_reindex()`, inspect `git diff --name-only`
279
279
 
280
280
  ---
281
281
 
282
- ### `/rdr-list`
282
+ ### `/nx:rdr-list`
283
283
 
284
- **Trigger:** User says "list RDRs", or `/rdr-list`
284
+ **Trigger:** User says "list RDRs", or `/nx:rdr-list`
285
285
 
286
286
  **Agent:** None — read-only query.
287
287
 
@@ -297,16 +297,16 @@ Future enhancement: after `check_and_reindex()`, inspect `git diff --name-only`
297
297
 
298
298
  | Skill | Agent | Role |
299
299
  |-------|-------|------|
300
- | `/rdr-create` | — | Mechanical scaffolding |
301
- | `/rdr-research add` | `deep-research-synthesizer` | Fan out across web, codebase, T3, DEVONthink to gather and classify evidence |
302
- | `/rdr-research add` (code) | `codebase-deep-analyzer` | Deep code exploration for code-specific research questions |
303
- | `/rdr-gate` (Layer 3) | `substantive-critic` | Structural flaws, contradictions, unvalidated assumptions, proportionality |
304
- | `/rdr-gate` (prior art) | `nx search --corpus docs__rdr` | Prefix fan-out across all repos' RDR collections |
305
- | `/rdr-close` (decompose) | — (direct) | Parse Implementation Plan into beads via `bd create` + `bd dep add` |
306
- | `/rdr-close` (archive) | `knowledge-tidier` | Archive post-mortem to `knowledge__rdr_postmortem__{repo}` |
307
- | `/rdr-close` (divergence) | `substantive-critic` | Classify divergence patterns if post-mortem created |
308
- | `/rdr-show` | — | Read-only display |
309
- | `/rdr-list` | — | Read-only query |
300
+ | `/nx:rdr-create` | — | Mechanical scaffolding |
301
+ | `/nx:rdr-research add` | `deep-research-synthesizer` | Fan out across web, codebase, T3, DEVONthink to gather and classify evidence |
302
+ | `/nx:rdr-research add` (code) | `codebase-deep-analyzer` | Deep code exploration for code-specific research questions |
303
+ | `/nx:rdr-gate` (Layer 3) | `substantive-critic` | Structural flaws, contradictions, unvalidated assumptions, proportionality |
304
+ | `/nx:rdr-gate` (prior art) | `nx search --corpus docs__rdr` | Prefix fan-out across all repos' RDR collections |
305
+ | `/nx:rdr-close` (decompose) | — (direct) | Parse Implementation Plan into beads via `bd create` + `bd dep add` |
306
+ | `/nx:rdr-close` (archive) | `knowledge-tidier` | Archive post-mortem to `knowledge__rdr_postmortem__{repo}` |
307
+ | `/nx:rdr-close` (divergence) | `substantive-critic` | Classify divergence patterns if post-mortem created |
308
+ | `/nx:rdr-show` | — | Read-only display |
309
+ | `/nx:rdr-list` | — | Read-only query |
310
310
 
311
311
  **Agent selection rationale:** The original design used `strategic-planner` (Opus) for bead decomposition. Rev 2 delegated to `knowledge-tidier` (Haiku). Rev 3 moved bead creation back into the skill itself — the Implementation Plan section has a defined structure (Phase N / Step N headings), the skill already has `Bash` access, and splitting bead creation from archival simplifies failure handling. `knowledge-tidier` is now only used for post-mortem archival to T3 (its core strength: knowledge organization).
312
312
 
@@ -326,7 +326,7 @@ docs/
326
326
  └── ...
327
327
  ```
328
328
 
329
- **Bootstrapping:** `/rdr-create` handles first-use initialization: creates `docs/rdr/` and `docs/rdr/post-mortem/` directories, copies templates, initializes the README index. No separate bootstrap command needed.
329
+ **Bootstrapping:** `/nx:rdr-create` handles first-use initialization: creates `docs/rdr/` and `docs/rdr/post-mortem/` directories, copies templates, initializes the README index. No separate bootstrap command needed.
330
330
 
331
331
  **README index merge conflicts:** The auto-generated `docs/rdr/README.md` will conflict in multi-contributor workflows. This is acceptable — the file is trivially regenerable from T2 state and filesystem contents. Consider adding a `.gitattributes` entry marking it as auto-generated.
332
332
 
@@ -412,7 +412,7 @@ ttl_days: 0 # permanent
412
412
  **Cross-project search:** `resolve_corpus()` treats arguments containing `__` as exact collection names, not prefixes. Therefore `--corpus docs__rdr` does **not** fan out. The skills use collection enumeration for cross-project search:
413
413
 
414
414
  ```bash
415
- # In /rdr-gate Layer 3:
415
+ # In /nx:rdr-gate Layer 3:
416
416
  collections=$(nx collection list | grep '^docs__rdr__')
417
417
  for col in $collections; do
418
418
  nx search "query" --corpus "$col" --n 5
@@ -421,7 +421,7 @@ done
421
421
 
422
422
  **Repo name length constraint:** ChromaDB enforces 63-character collection names. `docs__rdr__` is 11 characters, leaving 52 for the repo name. Repo names exceeding 52 characters are truncated, with the full name stored in document metadata.
423
423
 
424
- **Cold-start behavior:** On first use (no `docs__rdr__*` collections exist), `/rdr-gate` Layer 3 gracefully reports "No prior RDRs indexed. Cross-project prior-art search will improve as RDRs are indexed and closed." T3 search handles non-existent collections via `_ChromaNotFoundError` → `continue`.
424
+ **Cold-start behavior:** On first use (no `docs__rdr__*` collections exist), `/nx:rdr-gate` Layer 3 gracefully reports "No prior RDRs indexed. Cross-project prior-art search will improve as RDRs are indexed and closed." T3 search handles non-existent collections via `_ChromaNotFoundError` → `continue`.
425
425
 
426
426
  ## Integration Points
427
427
 
@@ -429,17 +429,17 @@ done
429
429
  nx index rdr ──────────────────────> docs__rdr__{repo} (T3, semantic index)
430
430
  SemanticMarkdownChunker + voyage-context-3
431
431
 
432
- /rdr-create ─────────────────────> docs/rdr/NNN.md (filesystem)
432
+ /nx:rdr-create ─────────────────────> docs/rdr/NNN.md (filesystem)
433
433
  nx memory put - ... --ttl permanent (T2)
434
434
 
435
- /rdr-research ──agent──> findings > docs/rdr/NNN.md (append to Research Findings)
435
+ /nx:rdr-research ──agent──> findings > docs/rdr/NNN.md (append to Research Findings)
436
436
  nx memory put - ... --ttl permanent (T2, structured)
437
437
 
438
- /rdr-gate ──────agent──> critique > nx search --corpus docs__rdr (T3, prior art)
438
+ /nx:rdr-gate ──────agent──> critique > nx search --corpus docs__rdr (T3, prior art)
439
439
  substantive-critic nx memory put - ... (T2, status=Final)
440
440
  nx index rdr (T3, re-index updated content)
441
441
 
442
- /rdr-close ─────direct──> beads ──> bd create (epic + children)
442
+ /nx:rdr-close ─────direct──> beads ──> bd create (epic + children)
443
443
  bd dep add (wiring)
444
444
  docs/rdr/post-mortem/NNN.md (if diverged)
445
445
  ─────direct──> state ──> nx memory put - ... (T2, status=closed)
@@ -456,22 +456,22 @@ For repos with existing RDRs (e.g., arcaneum with 19 RDRs) that predate this sys
456
456
  # Index existing RDRs for semantic search:
457
457
  nx index rdr /path/to/repo
458
458
 
459
- # Optionally seed T2 metadata for /rdr-list and /rdr-show:
460
- # A one-time /rdr-import skill could scan docs/rdr/*.md,
459
+ # Optionally seed T2 metadata for /nx:rdr-list and /nx:rdr-show:
460
+ # A one-time /nx:rdr-import skill could scan docs/rdr/*.md,
461
461
  # parse frontmatter, and create T2 records. Not in initial scope
462
462
  # but a natural follow-up.
463
463
  ```
464
464
 
465
- The `nx index rdr` command works immediately on any repo with `docs/rdr/*.md` — no migration needed for semantic search. T2 metadata is only needed for the structured query features (`/rdr-list --has-assumptions`, etc.) and can be populated incrementally.
465
+ The `nx index rdr` command works immediately on any repo with `docs/rdr/*.md` — no migration needed for semantic search. T2 metadata is only needed for the structured query features (`/nx:rdr-list --has-assumptions`, etc.) and can be populated incrementally.
466
466
 
467
467
  ## What This Does NOT Cover
468
468
 
469
469
  - **RDR content authoring** — The skills manage lifecycle, not prose. The author writes the RDR.
470
- - **Automated research execution** — `/rdr-research add` records findings; the agent helps gather them but the human classifies.
470
+ - **Automated research execution** — `/nx:rdr-research add` records findings; the agent helps gather them but the human classifies.
471
471
  - **PR integration** — RDR files are version-controlled and naturally participate in PRs, but there's no GitHub-specific automation.
472
472
  - **Cross-repo RDR dependencies** — T3 archive enables cross-project search, but there's no formal dependency graph between RDRs in different repos.
473
473
  - **Server auto-reindex of RDRs** — Deferred to v2. Currently requires manual `nx index rdr` after changes.
474
- - **Filesystem-T2 sync** — If a user edits an RDR's markdown metadata directly (e.g., changes status), T2 is not automatically updated. The skills are the intended interface; direct edits may cause T2/filesystem drift. A future `/rdr-sync` command could reconcile.
474
+ - **Filesystem-T2 sync** — If a user edits an RDR's markdown metadata directly (e.g., changes status), T2 is not automatically updated. The skills are the intended interface; direct edits may cause T2/filesystem drift. A future `/nx:rdr-sync` command could reconcile.
475
475
 
476
476
  ## Revision History
477
477
 
@@ -2,7 +2,7 @@
2
2
 
3
3
  > **For Claude:** REQUIRED SUB-SKILL: Use superpowers:executing-plans to implement this plan task-by-task.
4
4
 
5
- **Goal:** Implement the RDR workflow automation system: `nx index rdr` CLI command, SessionStart hook, and 6 Claude Code slash command skills (`/rdr-create`, `/rdr-list`, `/rdr-show`, `/rdr-research`, `/rdr-gate`, `/rdr-close`).
5
+ **Goal:** Implement the RDR workflow automation system: `nx index rdr` CLI command, SessionStart hook, and 6 Claude Code slash command skills (`/nx:rdr-create`, `/nx:rdr-list`, `/nx:rdr-show`, `/nx:rdr-research`, `/nx:rdr-gate`, `/nx:rdr-close`).
6
6
 
7
7
  **Architecture:** Python CLI command + hook script for infrastructure; markdown skill files for workflow orchestration. Skills invoke `nx` CLI and `bd` for state management. Storage: filesystem (docs/rdr/*.md) + T2 (structured metadata) + T3 (semantic index via `docs__rdr__{repo}`).
8
8
 
@@ -331,9 +331,9 @@ git commit -m "feat: bundle RDR and post-mortem templates as plugin resources"
331
331
 
332
332
  ---
333
333
 
334
- ## Phase 4: Skills — Read-Only First (`/rdr-list`, `/rdr-show`)
334
+ ## Phase 4: Skills — Read-Only First (`/nx:rdr-list`, `/nx:rdr-show`)
335
335
 
336
- ### Task 5: Create `/rdr-list` skill
336
+ ### Task 5: Create `/nx:rdr-list` skill
337
337
 
338
338
  **Files:**
339
339
  - Create: `nx/skills/rdr-list/SKILL.md`
@@ -345,7 +345,7 @@ git commit -m "feat: bundle RDR and post-mortem templates as plugin resources"
345
345
  name: rdr-list
346
346
  description: >
347
347
  List all RDRs in the current project with status, type, and priority.
348
- Triggers: user says "list RDRs", "show all RDRs", or /rdr-list
348
+ Triggers: user says "list RDRs", "show all RDRs", or /nx:rdr-list
349
349
  allowed-tools: Read, Glob, Grep, Bash
350
350
  ---
351
351
 
@@ -354,7 +354,7 @@ allowed-tools: Read, Glob, Grep, Bash
354
354
  ## When This Skill Activates
355
355
 
356
356
  - User says "list RDRs", "show RDRs", "what RDRs exist"
357
- - User invokes `/rdr-list`
357
+ - User invokes `/nx:rdr-list`
358
358
  - User asks about the state of planning documents
359
359
 
360
360
  ## Behavior
@@ -394,12 +394,12 @@ If the user specifies filters, apply them:
394
394
  ```bash
395
395
  cd /Users/hal.hildebrand/git/nexus
396
396
  git add nx/skills/rdr-list/SKILL.md
397
- git commit -m "feat: add /rdr-list skill for listing RDRs with status"
397
+ git commit -m "feat: add /nx:rdr-list skill for listing RDRs with status"
398
398
  ```
399
399
 
400
400
  ---
401
401
 
402
- ### Task 6: Create `/rdr-show` skill
402
+ ### Task 6: Create `/nx:rdr-show` skill
403
403
 
404
404
  **Files:**
405
405
  - Create: `nx/skills/rdr-show/SKILL.md`
@@ -411,7 +411,7 @@ git commit -m "feat: add /rdr-list skill for listing RDRs with status"
411
411
  name: rdr-show
412
412
  description: >
413
413
  Display detailed RDR information including content, status, research findings,
414
- and linked beads. Triggers: user says "show RDR", "RDR details", or /rdr-show
414
+ and linked beads. Triggers: user says "show RDR", "RDR details", or /nx:rdr-show
415
415
  allowed-tools: Read, Glob, Grep, Bash
416
416
  ---
417
417
 
@@ -420,7 +420,7 @@ allowed-tools: Read, Glob, Grep, Bash
420
420
  ## When This Skill Activates
421
421
 
422
422
  - User says "show RDR 003", "RDR details", "what's in RDR 5"
423
- - User invokes `/rdr-show`
423
+ - User invokes `/nx:rdr-show`
424
424
  - User asks about a specific RDR's content or status
425
425
 
426
426
  ## Behavior
@@ -456,7 +456,7 @@ allowed-tools: Read, Glob, Grep, Bash
456
456
  (not closed yet)
457
457
  ```
458
458
 
459
- 6. If the RDR ID is not found, list available RDRs (delegate to `/rdr-list` behavior).
459
+ 6. If the RDR ID is not found, list available RDRs (delegate to `/nx:rdr-list` behavior).
460
460
 
461
461
  ## Notes
462
462
 
@@ -470,14 +470,14 @@ allowed-tools: Read, Glob, Grep, Bash
470
470
  ```bash
471
471
  cd /Users/hal.hildebrand/git/nexus
472
472
  git add nx/skills/rdr-show/SKILL.md
473
- git commit -m "feat: add /rdr-show skill for detailed RDR inspection"
473
+ git commit -m "feat: add /nx:rdr-show skill for detailed RDR inspection"
474
474
  ```
475
475
 
476
476
  ---
477
477
 
478
- ## Phase 5: Skills — Lifecycle (`/rdr-create`, `/rdr-research`)
478
+ ## Phase 5: Skills — Lifecycle (`/nx:rdr-create`, `/nx:rdr-research`)
479
479
 
480
- ### Task 7: Create `/rdr-create` skill
480
+ ### Task 7: Create `/nx:rdr-create` skill
481
481
 
482
482
  **Files:**
483
483
  - Create: `nx/skills/rdr-create/SKILL.md`
@@ -489,7 +489,7 @@ git commit -m "feat: add /rdr-show skill for detailed RDR inspection"
489
489
  name: rdr-create
490
490
  description: >
491
491
  Scaffold a new RDR from template, assign sequential ID, register in T2, add to index.
492
- Triggers: user says "create an RDR", "new RDR", or /rdr-create
492
+ Triggers: user says "create an RDR", "new RDR", or /nx:rdr-create
493
493
  allowed-tools: Read, Write, Edit, Glob, Grep, Bash
494
494
  ---
495
495
 
@@ -498,7 +498,7 @@ allowed-tools: Read, Write, Edit, Glob, Grep, Bash
498
498
  ## When This Skill Activates
499
499
 
500
500
  - User says "create an RDR", "new RDR", "start an RDR"
501
- - User invokes `/rdr-create`
501
+ - User invokes `/nx:rdr-create`
502
502
  - User wants to document a technical decision before implementation
503
503
 
504
504
  ## Inputs
@@ -583,13 +583,13 @@ Created RDR PREFIX-NNN: "Title"
583
583
  File: docs/rdr/NNN-kebab-title.md
584
584
  Status: Draft
585
585
 
586
- Next: Fill in Problem Statement and Context, then use /rdr-research to add findings.
586
+ Next: Fill in Problem Statement and Context, then use /nx:rdr-research to add findings.
587
587
  ```
588
588
 
589
589
  ## Does NOT
590
590
 
591
- - Create beads (that happens at `/rdr-close`)
592
- - Run validation (that happens at `/rdr-gate`)
591
+ - Create beads (that happens at `/nx:rdr-close`)
592
+ - Run validation (that happens at `/nx:rdr-gate`)
593
593
  - Commit (user decides when to commit)
594
594
  - Run `nx index rdr` (user can do this manually or it happens at gate/close)
595
595
  ```
@@ -599,12 +599,12 @@ Next: Fill in Problem Statement and Context, then use /rdr-research to add findi
599
599
  ```bash
600
600
  cd /Users/hal.hildebrand/git/nexus
601
601
  git add nx/skills/rdr-create/SKILL.md
602
- git commit -m "feat: add /rdr-create skill for scaffolding new RDRs"
602
+ git commit -m "feat: add /nx:rdr-create skill for scaffolding new RDRs"
603
603
  ```
604
604
 
605
605
  ---
606
606
 
607
- ### Task 8: Create `/rdr-research` skill
607
+ ### Task 8: Create `/nx:rdr-research` skill
608
608
 
609
609
  **Files:**
610
610
  - Create: `nx/skills/rdr-research/SKILL.md`
@@ -616,7 +616,7 @@ git commit -m "feat: add /rdr-create skill for scaffolding new RDRs"
616
616
  name: rdr-research
617
617
  description: >
618
618
  Add, track, and verify structured research findings for an RDR.
619
- Triggers: user says "add research finding", "RDR research", or /rdr-research
619
+ Triggers: user says "add research finding", "RDR research", or /nx:rdr-research
620
620
  allowed-tools: Task, Read, Write, Edit, Glob, Grep, Bash
621
621
  ---
622
622
 
@@ -627,12 +627,12 @@ Optionally delegates to **deep-research-synthesizer** (sonnet) for evidence gath
627
627
  ## When This Skill Activates
628
628
 
629
629
  - User says "add research finding", "update RDR research", "verify assumption"
630
- - User invokes `/rdr-research`
630
+ - User invokes `/nx:rdr-research`
631
631
  - User wants to record or classify a discovery during RDR planning
632
632
 
633
633
  ## Subcommands
634
634
 
635
- ### `/rdr-research add <id>`
635
+ ### `/nx:rdr-research add <id>`
636
636
 
637
637
  **Inputs** (prompt the user):
638
638
  1. **Finding text**: What was discovered
@@ -667,7 +667,7 @@ Optionally delegates to **deep-research-synthesizer** (sonnet) for evidence gath
667
667
  *Source: source description*
668
668
  ```
669
669
 
670
- ### `/rdr-research status <id>`
670
+ ### `/nx:rdr-research status <id>`
671
671
 
672
672
  1. List T2 entries: `nx memory list --project {repo}_rdr`
673
673
  2. Filter titles matching `NNN-research-*`
@@ -681,7 +681,7 @@ Optionally delegates to **deep-research-synthesizer** (sonnet) for evidence gath
681
681
  - [seq 6] "Latency under 100ms" (docs only)
682
682
  ```
683
683
 
684
- ### `/rdr-research verify <id> <finding-seq>`
684
+ ### `/nx:rdr-research verify <id> <finding-seq>`
685
685
 
686
686
  1. Read T2 record: `nx memory get --project {repo}_rdr --title NNN-research-{seq}`
687
687
  2. Prompt for new classification (verified or documented) and updated verification method
@@ -707,14 +707,14 @@ When the user asks to *investigate* something (not just record a finding):
707
707
  ```bash
708
708
  cd /Users/hal.hildebrand/git/nexus
709
709
  git add nx/skills/rdr-research/SKILL.md
710
- git commit -m "feat: add /rdr-research skill for structured research tracking"
710
+ git commit -m "feat: add /nx:rdr-research skill for structured research tracking"
711
711
  ```
712
712
 
713
713
  ---
714
714
 
715
- ## Phase 6: Skills — Gate and Close (`/rdr-gate`, `/rdr-close`)
715
+ ## Phase 6: Skills — Gate and Close (`/nx:rdr-gate`, `/nx:rdr-close`)
716
716
 
717
- ### Task 9: Create `/rdr-gate` skill
717
+ ### Task 9: Create `/nx:rdr-gate` skill
718
718
 
719
719
  **Files:**
720
720
  - Create: `nx/skills/rdr-gate/SKILL.md`
@@ -726,7 +726,7 @@ git commit -m "feat: add /rdr-research skill for structured research tracking"
726
726
  name: rdr-gate
727
727
  description: >
728
728
  Run the RDR finalization gate: structural validation, assumption audit, and AI critique.
729
- Triggers: user says "gate this RDR", "finalization check", or /rdr-gate
729
+ Triggers: user says "gate this RDR", "finalization check", or /nx:rdr-gate
730
730
  allowed-tools: Task, Read, Write, Edit, Glob, Grep, Bash
731
731
  ---
732
732
 
@@ -737,7 +737,7 @@ Delegates Layer 3 to the **substantive-critic** agent (sonnet). See [registry.ya
737
737
  ## When This Skill Activates
738
738
 
739
739
  - User says "gate this RDR", "finalization check", "is this RDR ready?"
740
- - User invokes `/rdr-gate`
740
+ - User invokes `/nx:rdr-gate`
741
741
  - User wants to validate an RDR before locking it as Final
742
742
 
743
743
  ## Input
@@ -857,12 +857,12 @@ Display the critique with specific sections to address. Status remains Draft.
857
857
  ```bash
858
858
  cd /Users/hal.hildebrand/git/nexus
859
859
  git add nx/skills/rdr-gate/SKILL.md
860
- git commit -m "feat: add /rdr-gate skill with 3-layer validation"
860
+ git commit -m "feat: add /nx:rdr-gate skill with 3-layer validation"
861
861
  ```
862
862
 
863
863
  ---
864
864
 
865
- ### Task 10: Create `/rdr-close` skill
865
+ ### Task 10: Create `/nx:rdr-close` skill
866
866
 
867
867
  **Files:**
868
868
  - Create: `nx/skills/rdr-close/SKILL.md`
@@ -874,7 +874,7 @@ git commit -m "feat: add /rdr-gate skill with 3-layer validation"
874
874
  name: rdr-close
875
875
  description: >
876
876
  Close an RDR: capture divergence, create post-mortem, decompose into beads, archive to T3.
877
- Triggers: user says "close this RDR", "RDR done", or /rdr-close
877
+ Triggers: user says "close this RDR", "RDR done", or /nx:rdr-close
878
878
  allowed-tools: Task, Read, Write, Edit, Glob, Grep, Bash
879
879
  ---
880
880
 
@@ -885,7 +885,7 @@ Delegates decomposition and archival to the **knowledge-tidier** agent (haiku).
885
885
  ## When This Skill Activates
886
886
 
887
887
  - User says "close this RDR", "RDR done", "finish RDR"
888
- - User invokes `/rdr-close`
888
+ - User invokes `/nx:rdr-close`
889
889
  - Implementation is complete and the RDR should be finalized
890
890
 
891
891
  ## Inputs
@@ -968,7 +968,7 @@ Display the bead tree for user confirmation before proceeding.
968
968
  close_reason: "Implemented", epic_bead: "{bead_id}", archived: true)
969
969
  EOF
970
970
  ```
971
- If T3 archive fails, set `archived: false` — retryable by re-running `/rdr-close`
971
+ If T3 archive fails, set `archived: false` — retryable by re-running `/nx:rdr-close`
972
972
 
973
973
  2. Update status in RDR markdown metadata
974
974
  3. Regenerate `docs/rdr/README.md` index
@@ -1015,7 +1015,7 @@ nx store put docs/rdr/post-mortem/NNN-*.md --collection docs__rdr__{repo} \
1015
1015
  The close operation performs multiple state mutations. If any step fails:
1016
1016
  - Each step emits clear status (e.g., "T2 updated ✓", "Beads created ✓", "T3 archive ✗ FAILED")
1017
1017
  - T2 `archived` flag tracks whether T3 archival succeeded
1018
- - Re-running `/rdr-close` is idempotent: checks T2 state and skips completed steps
1018
+ - Re-running `/nx:rdr-close` is idempotent: checks T2 state and skips completed steps
1019
1019
  - If bead creation partially fails, report which beads were created and which failed
1020
1020
 
1021
1021
  ## Does NOT
@@ -1030,7 +1030,7 @@ The close operation performs multiple state mutations. If any step fails:
1030
1030
  ```bash
1031
1031
  cd /Users/hal.hildebrand/git/nexus
1032
1032
  git add nx/skills/rdr-close/SKILL.md
1033
- git commit -m "feat: add /rdr-close skill with post-mortem, bead decomposition, T3 archive"
1033
+ git commit -m "feat: add /nx:rdr-close skill with post-mortem, bead decomposition, T3 archive"
1034
1034
  ```
1035
1035
 
1036
1036
  ---
@@ -1053,7 +1053,7 @@ No new agents are needed — the RDR skills dispatch to existing agents (substan
1053
1053
 
1054
1054
  rdr_skills:
1055
1055
  rdr-create:
1056
- slash_command: /rdr-create
1056
+ slash_command: /nx:rdr-create
1057
1057
  description: "Scaffold new RDR from template, assign ID, register in T2"
1058
1058
  triggers:
1059
1059
  - "create an RDR"
@@ -1061,7 +1061,7 @@ rdr_skills:
1061
1061
  - "start planning document"
1062
1062
 
1063
1063
  rdr-research:
1064
- slash_command: /rdr-research
1064
+ slash_command: /nx:rdr-research
1065
1065
  description: "Add, track, and verify structured research findings"
1066
1066
  triggers:
1067
1067
  - "add research finding"
@@ -1070,7 +1070,7 @@ rdr_skills:
1070
1070
  dispatches_to: [deep-research-synthesizer, codebase-deep-analyzer]
1071
1071
 
1072
1072
  rdr-gate:
1073
- slash_command: /rdr-gate
1073
+ slash_command: /nx:rdr-gate
1074
1074
  description: "Run finalization gate: structural + assumption + AI critique"
1075
1075
  triggers:
1076
1076
  - "gate this RDR"
@@ -1079,7 +1079,7 @@ rdr_skills:
1079
1079
  dispatches_to: [substantive-critic]
1080
1080
 
1081
1081
  rdr-close:
1082
- slash_command: /rdr-close
1082
+ slash_command: /nx:rdr-close
1083
1083
  description: "Close RDR with post-mortem, bead decomposition, T3 archive"
1084
1084
  triggers:
1085
1085
  - "close this RDR"
@@ -1088,14 +1088,14 @@ rdr_skills:
1088
1088
  dispatches_to: [knowledge-tidier]
1089
1089
 
1090
1090
  rdr-list:
1091
- slash_command: /rdr-list
1091
+ slash_command: /nx:rdr-list
1092
1092
  description: "List all RDRs with status, type, priority"
1093
1093
  triggers:
1094
1094
  - "list RDRs"
1095
1095
  - "show all RDRs"
1096
1096
 
1097
1097
  rdr-show:
1098
- slash_command: /rdr-show
1098
+ slash_command: /nx:rdr-show
1099
1099
  description: "Display detailed RDR information"
1100
1100
  triggers:
1101
1101
  - "show RDR"
@@ -1208,10 +1208,10 @@ If any fixes were needed during smoke testing, commit them.
1208
1208
  1. `feat: add nx index rdr command for RDR document indexing`
1209
1209
  2. `feat: add SessionStart hook for RDR auto-detection`
1210
1210
  3. `feat: bundle RDR and post-mortem templates as plugin resources`
1211
- 4. `feat: add /rdr-list skill for listing RDRs with status`
1212
- 5. `feat: add /rdr-show skill for detailed RDR inspection`
1213
- 6. `feat: add /rdr-create skill for scaffolding new RDRs`
1214
- 7. `feat: add /rdr-research skill for structured research tracking`
1215
- 8. `feat: add /rdr-gate skill with 3-layer validation`
1216
- 9. `feat: add /rdr-close skill with post-mortem, bead decomposition, T3 archive`
1211
+ 4. `feat: add /nx:rdr-list skill for listing RDRs with status`
1212
+ 5. `feat: add /nx:rdr-show skill for detailed RDR inspection`
1213
+ 6. `feat: add /nx:rdr-create skill for scaffolding new RDRs`
1214
+ 7. `feat: add /nx:rdr-research skill for structured research tracking`
1215
+ 8. `feat: add /nx:rdr-gate skill with 3-layer validation`
1216
+ 9. `feat: add /nx:rdr-close skill with post-mortem, bead decomposition, T3 archive`
1217
1217
  10. `feat: register RDR skills in registry, add RDR awareness to analyzer`
@@ -40,7 +40,7 @@ The plugin wires beads into the session lifecycle:
40
40
  - **SessionStart** also shows ready beads (unblocked work) via `bd ready`
41
41
  - **SubagentStart** injects the active bead so spawned agents know what
42
42
  task they're continuing
43
- - **RDR close** (`/rdr-close`) decomposes a decision into beads — one epic
43
+ - **RDR close** (`/nx:rdr-close`) decomposes a decision into beads — one epic
44
44
  for the overall effort, plus task beads for each implementation step
45
45
  - **Branch naming** ties git branches to beads: `feature/<bead-id>-<description>`
46
46
 
@@ -55,7 +55,7 @@ the other.
55
55
 
56
56
  When you use both, the connections are automated:
57
57
 
58
- - `/rdr-close` creates beads (epic + task beads) for implementation tracking.
58
+ - `/nx:rdr-close` creates beads (epic + task beads) for implementation tracking.
59
59
  The `epic_bead` field in each RDR's T2 metadata provides a machine-readable
60
60
  link from decision to work items.
61
61
  - RDR decisions surface as prior art during planning via `nx search "topic"` against the knowledge corpus.