compressedfhir 1.0.1__tar.gz → 1.0.2__tar.gz

compressedfhir-1.0.2/PKG-INFO

@@ -0,0 +1,139 @@
+Metadata-Version: 2.4
+Name: compressedfhir
+Version: 1.0.2
+Summary: Stores FHIR JSON resources in compressed form in memory
+Home-page: https://github.com/icanbwell/compressed-fhir
+Author: Imran Qureshi
+Author-email: imran.qureshi@icanbwell.com
+Classifier: Development Status :: 4 - Beta
+Classifier: Programming Language :: Python :: 3
+Classifier: License :: OSI Approved :: Apache Software License
+Classifier: Operating System :: OS Independent
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: msgpack>=1.0.0
+Requires-Dist: orjson>=3.10.16
+Dynamic: author
+Dynamic: author-email
+Dynamic: classifier
+Dynamic: description
+Dynamic: description-content-type
+Dynamic: home-page
+Dynamic: license-file
+Dynamic: requires-dist
+Dynamic: requires-python
+Dynamic: summary
+
+# Compressed FHIR
+
+A Python library for storing FHIR JSON resources in a compressed form in memory, optimizing memory usage while maintaining fast access to FHIR data.
+
+## Overview
+
+Compressed FHIR is a specialized library that provides efficient memory storage for FHIR (Fast Healthcare Interoperability Resources) JSON resources. It uses zlib or msgpack for compression while ensuring quick access to the stored healthcare data.
+
+## Features
+
+- Efficient memory storage of FHIR resources
+- Fast access to compressed FHIR data
+- Compatible with standard FHIR JSON formats
+- Minimal memory footprint
+- Python 3.10+ support
+
+## Installation
+
+You can install the package using pip:
+
+```bash
+pip install compressedfhir
+```
+
+Or using pipenv:
+
+```bash
+pipenv install compressedfhir
+```
+
+## Requirements
+
+- Python 3.10 or higher
+- msgpack >= 1.0.0
+- orjson >= 3.10.16
+
+## Usage
+
+```python
+from typing import Any
+from collections import OrderedDict
+
+from compressedfhir.fhir.fhir_resource import FhirResource
+from compressedfhir.utilities.compressed_dict.v1.compressed_dict_storage_mode import CompressedDictStorageMode
+
+
+resource1 = FhirResource(
+    initial_dict={"resourceType": "Observation", "id": "456"},
+    storage_mode=CompressedDictStorageMode.default(),
+)
+
+my_dict: OrderedDict[str,Any] = resource1.dict()
+my_plain_dict: dict[str, Any] = resource1.to_plain_dict()
+my_json: str = resource1.json()
+
+with resource1.transaction():
+   assert "email" not in resource1
+   assert resource1.get("name") == "Custom Mode User"
+   assert resource1.get("active") is True
+```
+
+## Development Setup
+
+1. Clone the repository:
+   ```bash
+   git clone https://github.com/icanbwell/compressed-fhir.git
+   cd compressed-fhir
+   ```
+
+2. Install dependencies using pipenv:
+   ```bash
+   pipenv install --dev
+   ```
+
+3. Set up pre-commit hooks:
+   ```bash
+   pre-commit install
+   ```
+
+## Docker Support
+
+The project includes Docker support for development and deployment:
+
+```bash
+# Build the Docker image
+docker build -t compressed-fhir .
+
+# Run using docker-compose
+docker-compose up
+```
+
+## Contributing
+
+Please read [CONTRIBUTING.md](CONTRIBUTING.md) for details on our code of conduct and the process for submitting pull requests.
+
+## License
+
+This project is licensed under the Apache License 2.0 - see the [LICENSE](LICENSE) file for details.
+
+## Authors
+
+- Imran Qureshi (imran.qureshi@icanbwell.com)
+
+## Support
+
+For support, please open an issue in the GitHub repository or contact the maintainers.
+
+## Project Status
+
+Current status: Beta
+
+The project is under active development. Please check the GitHub repository for the latest updates and changes.

compressedfhir-1.0.2/README.md

@@ -0,0 +1,112 @@
+# Compressed FHIR
+
+A Python library for storing FHIR JSON resources in a compressed form in memory, optimizing memory usage while maintaining fast access to FHIR data.
+
+## Overview
+
+Compressed FHIR is a specialized library that provides efficient memory storage for FHIR (Fast Healthcare Interoperability Resources) JSON resources. It uses zlib or msgpack for compression while ensuring quick access to the stored healthcare data.
+
+## Features
+
+- Efficient memory storage of FHIR resources
+- Fast access to compressed FHIR data
+- Compatible with standard FHIR JSON formats
+- Minimal memory footprint
+- Python 3.10+ support
+
+## Installation
+
+You can install the package using pip:
+
+```bash
+pip install compressedfhir
+```
+
+Or using pipenv:
+
+```bash
+pipenv install compressedfhir
+```
+
+## Requirements
+
+- Python 3.10 or higher
+- msgpack >= 1.0.0
+- orjson >= 3.10.16
+
+## Usage
+
+```python
+from typing import Any
+from collections import OrderedDict
+
+from compressedfhir.fhir.fhir_resource import FhirResource
+from compressedfhir.utilities.compressed_dict.v1.compressed_dict_storage_mode import CompressedDictStorageMode
+
+
+resource1 = FhirResource(
+    initial_dict={"resourceType": "Observation", "id": "456"},
+    storage_mode=CompressedDictStorageMode.default(),
+)
+
+my_dict: OrderedDict[str,Any] = resource1.dict()
+my_plain_dict: dict[str, Any] = resource1.to_plain_dict()
+my_json: str = resource1.json()
+
+with resource1.transaction():
+   assert "email" not in resource1
+   assert resource1.get("name") == "Custom Mode User"
+   assert resource1.get("active") is True
+```
+
+## Development Setup
+
+1. Clone the repository:
+   ```bash
+   git clone https://github.com/icanbwell/compressed-fhir.git
+   cd compressed-fhir
+   ```
+
+2. Install dependencies using pipenv:
+   ```bash
+   pipenv install --dev
+   ```
+
+3. Set up pre-commit hooks:
+   ```bash
+   pre-commit install
+   ```
+
+## Docker Support
+
+The project includes Docker support for development and deployment:
+
+```bash
+# Build the Docker image
+docker build -t compressed-fhir .
+
+# Run using docker-compose
+docker-compose up
+```
+
+## Contributing
+
+Please read [CONTRIBUTING.md](CONTRIBUTING.md) for details on our code of conduct and the process for submitting pull requests.
+
+## License
+
+This project is licensed under the Apache License 2.0 - see the [LICENSE](LICENSE) file for details.
+
+## Authors
+
+- Imran Qureshi (imran.qureshi@icanbwell.com)
+
+## Support
+
+For support, please open an issue in the GitHub repository or contact the maintainers.
+
+## Project Status
+
+Current status: Beta
+
+The project is under active development. Please check the GitHub repository for the latest updates and changes.

compressedfhir-1.0.2/VERSION

@@ -0,0 +1 @@
+1.0.2

{compressedfhir-1.0.1 → compressedfhir-1.0.2}/compressedfhir/fhir/fhir_bundle_entry_request.py

@@ -43,14 +43,16 @@ class FhirBundleEntryRequest:
     def from_dict(
         cls, d: Dict[str, Any] | OrderedDict[str, Any]
     ) -> "FhirBundleEntryRequest":
+        date_if_modified_since: Optional[datetime] = None
+        if "ifModifiedSince" in d:
+            if isinstance(d["ifModifiedSince"], datetime):
+                date_if_modified_since = d["ifModifiedSince"]
+            elif isinstance(d["ifModifiedSince"], str):
+                date_if_modified_since = datetime.fromisoformat(d["ifModifiedSince"])
         return cls(
             url=d.get("url", "https://example.com"),
             method=d.get("method", "GET"),
-            ifModifiedSince=(
-                datetime.fromisoformat(d["ifModifiedSince"])
-                if "ifModifiedSince" in d
-                else None
-            ),
+            ifModifiedSince=date_if_modified_since,
             ifNoneMatch=d["ifNoneMatch"] if "ifNoneMatch" in d else None,
             ifNoneExist=d["ifNoneExist"] if "ifNoneExist" in d else None,
         )

{compressedfhir-1.0.1 → compressedfhir-1.0.2}/compressedfhir/fhir/fhir_bundle_entry_response.py

@@ -41,13 +41,17 @@ class FhirBundleEntryResponse:
     def from_dict(
         cls, d: Dict[str, Any] | OrderedDict[str, Any]
     ) -> "FhirBundleEntryResponse":
+
+        date_last_modified: Optional[datetime] = None
+        if "lastModified" in d:
+            if isinstance(d["lastModified"], datetime):
+                date_last_modified = d["lastModified"]
+            elif isinstance(d["lastModified"], str):
+                date_last_modified = datetime.fromisoformat(d["lastModified"])
+
         return cls(
             status=d["status"] if "status" in d else "200",
-            lastModified=(
-                datetime.fromisoformat(d["lastModified"])
-                if "lastModified" in d
-                else None
-            ),
+            lastModified=date_last_modified,
             etag=d["etag"] if "etag" in d else None,
             location=d["location"] if "location" in d else None,
         )

compressedfhir-1.0.2/compressedfhir.egg-info/PKG-INFO

@@ -0,0 +1,139 @@
+Metadata-Version: 2.4
+Name: compressedfhir
+Version: 1.0.2
+Summary: Stores FHIR JSON resources in compressed form in memory
+Home-page: https://github.com/icanbwell/compressed-fhir
+Author: Imran Qureshi
+Author-email: imran.qureshi@icanbwell.com
+Classifier: Development Status :: 4 - Beta
+Classifier: Programming Language :: Python :: 3
+Classifier: License :: OSI Approved :: Apache Software License
+Classifier: Operating System :: OS Independent
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: msgpack>=1.0.0
+Requires-Dist: orjson>=3.10.16
+Dynamic: author
+Dynamic: author-email
+Dynamic: classifier
+Dynamic: description
+Dynamic: description-content-type
+Dynamic: home-page
+Dynamic: license-file
+Dynamic: requires-dist
+Dynamic: requires-python
+Dynamic: summary
+
+# Compressed FHIR
+
+A Python library for storing FHIR JSON resources in a compressed form in memory, optimizing memory usage while maintaining fast access to FHIR data.
+
+## Overview
+
+Compressed FHIR is a specialized library that provides efficient memory storage for FHIR (Fast Healthcare Interoperability Resources) JSON resources. It uses zlib or msgpack for compression while ensuring quick access to the stored healthcare data.
+
+## Features
+
+- Efficient memory storage of FHIR resources
+- Fast access to compressed FHIR data
+- Compatible with standard FHIR JSON formats
+- Minimal memory footprint
+- Python 3.10+ support
+
+## Installation
+
+You can install the package using pip:
+
+```bash
+pip install compressedfhir
+```
+
+Or using pipenv:
+
+```bash
+pipenv install compressedfhir
+```
+
+## Requirements
+
+- Python 3.10 or higher
+- msgpack >= 1.0.0
+- orjson >= 3.10.16
+
+## Usage
+
+```python
+from typing import Any
+from collections import OrderedDict
+
+from compressedfhir.fhir.fhir_resource import FhirResource
+from compressedfhir.utilities.compressed_dict.v1.compressed_dict_storage_mode import CompressedDictStorageMode
+
+
+resource1 = FhirResource(
+    initial_dict={"resourceType": "Observation", "id": "456"},
+    storage_mode=CompressedDictStorageMode.default(),
+)
+
+my_dict: OrderedDict[str,Any] = resource1.dict()
+my_plain_dict: dict[str, Any] = resource1.to_plain_dict()
+my_json: str = resource1.json()
+
+with resource1.transaction():
+   assert "email" not in resource1
+   assert resource1.get("name") == "Custom Mode User"
+   assert resource1.get("active") is True
+```
+
+## Development Setup
+
+1. Clone the repository:
+   ```bash
+   git clone https://github.com/icanbwell/compressed-fhir.git
+   cd compressed-fhir
+   ```
+
+2. Install dependencies using pipenv:
+   ```bash
+   pipenv install --dev
+   ```
+
+3. Set up pre-commit hooks:
+   ```bash
+   pre-commit install
+   ```
+
+## Docker Support
+
+The project includes Docker support for development and deployment:
+
+```bash
+# Build the Docker image
+docker build -t compressed-fhir .
+
+# Run using docker-compose
+docker-compose up
+```
+
+## Contributing
+
+Please read [CONTRIBUTING.md](CONTRIBUTING.md) for details on our code of conduct and the process for submitting pull requests.
+
+## License
+
+This project is licensed under the Apache License 2.0 - see the [LICENSE](LICENSE) file for details.
+
+## Authors
+
+- Imran Qureshi (imran.qureshi@icanbwell.com)
+
+## Support
+
+For support, please open an issue in the GitHub repository or contact the maintainers.
+
+## Project Status
+
+Current status: Beta
+
+The project is under active development. Please check the GitHub repository for the latest updates and changes.

compressedfhir-1.0.1/PKG-INFO

@@ -1,28 +0,0 @@
-Metadata-Version: 2.4
-Name: compressedfhir
-Version: 1.0.1
-Summary: Stores FHIR JSON resources in compressed form in memory
-Home-page: https://github.com/icanbwell/compressed-fhir
-Author: Imran Qureshi
-Author-email: imran.qureshi@icanbwell.com
-Classifier: Development Status :: 4 - Beta
-Classifier: Programming Language :: Python :: 3
-Classifier: License :: OSI Approved :: Apache Software License
-Classifier: Operating System :: OS Independent
-Requires-Python: >=3.10
-Description-Content-Type: text/markdown
-License-File: LICENSE
-Requires-Dist: msgpack>=1.0.0
-Requires-Dist: orjson>=3.10.16
-Dynamic: author
-Dynamic: author-email
-Dynamic: classifier
-Dynamic: description
-Dynamic: description-content-type
-Dynamic: home-page
-Dynamic: license-file
-Dynamic: requires-dist
-Dynamic: requires-python
-Dynamic: summary
-
-# compressedfhir

compressedfhir-1.0.1/README.md

@@ -1 +0,0 @@
-# compressedfhir

compressedfhir-1.0.1/VERSION

@@ -1 +0,0 @@
-1.0.1

compressedfhir-1.0.1/compressedfhir.egg-info/PKG-INFO

@@ -1,28 +0,0 @@
-Metadata-Version: 2.4
-Name: compressedfhir
-Version: 1.0.1
-Summary: Stores FHIR JSON resources in compressed form in memory
-Home-page: https://github.com/icanbwell/compressed-fhir
-Author: Imran Qureshi
-Author-email: imran.qureshi@icanbwell.com
-Classifier: Development Status :: 4 - Beta
-Classifier: Programming Language :: Python :: 3
-Classifier: License :: OSI Approved :: Apache Software License
-Classifier: Operating System :: OS Independent
-Requires-Python: >=3.10
-Description-Content-Type: text/markdown
-License-File: LICENSE
-Requires-Dist: msgpack>=1.0.0
-Requires-Dist: orjson>=3.10.16
-Dynamic: author
-Dynamic: author-email
-Dynamic: classifier
-Dynamic: description
-Dynamic: description-content-type
-Dynamic: home-page
-Dynamic: license-file
-Dynamic: requires-dist
-Dynamic: requires-python
-Dynamic: summary
-
-# compressedfhir