compose-api-client 0.1.8__tar.gz → 0.2.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/PKG-INFO +1 -1
- compose_api_client-0.2.0/compose_api_client/api/results/get_simulations_status_batch.py +168 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/simulation/run_simulation.py +15 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/job_status.py +5 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/utils/run_simulation_and_wait.py +13 -5
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client.egg-info/PKG-INFO +1 -1
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client.egg-info/SOURCES.txt +1 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/pyproject.toml +3 -1
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/README.md +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/__init__.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/__init__.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/biosim_api/__init__.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/biosim_api/check_health_health_get.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/biosim_api/get_version_version_get.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/compute/__init__.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/compute/get_processes_list.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/compute/get_simulator_list.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/compute/get_steps_list.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/curated/__init__.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/curated/run_copasi.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/curated/run_tellurium.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/results/__init__.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/results/get_simulation_results_file.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/results/get_simulation_status.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/results/get_simulator_build_status.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/simulation/__init__.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/client.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/errors.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/__init__.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/bi_graph_compute_type.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/bi_graph_process.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/bi_graph_step.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/body_run_copasi.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/body_run_simulation.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/body_run_tellurium.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/check_health_health_get_response_check_health_health_get.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/containerization_file_repr.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/hpc_run.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/http_validation_error.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/job_type.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/package_type.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/registered_package.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/registered_simulators.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/simulation_experiment.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/simulation_experiment_metadata.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/simulator_version.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/validation_error.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/types.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/utils/__init__.py +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client.egg-info/dependency_links.txt +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client.egg-info/requires.txt +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client.egg-info/top_level.txt +0 -0
- {compose_api_client-0.1.8 → compose_api_client-0.2.0}/setup.cfg +0 -0
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from http import HTTPStatus
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from typing import Any, Optional, Union
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import httpx
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from ... import errors
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from ...client import AuthenticatedClient, Client
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from ...models.hpc_run import HpcRun
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from ...models.http_validation_error import HTTPValidationError
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from ...types import Response
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def _get_kwargs(
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*,
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body: list[int],
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) -> dict[str, Any]:
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headers: dict[str, Any] = {}
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_kwargs: dict[str, Any] = {
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"method": "get",
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"url": "/results/simulations/status/batch",
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}
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_kwargs["json"] = body
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headers["Content-Type"] = "application/json"
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_kwargs["headers"] = headers
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return _kwargs
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def _parse_response(
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*, client: Union[AuthenticatedClient, Client], response: httpx.Response
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) -> Optional[Union[HTTPValidationError, list["HpcRun"]]]:
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if response.status_code == 200:
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response_200 = []
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_response_200 = response.json()
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for response_200_item_data in _response_200:
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response_200_item = HpcRun.from_dict(response_200_item_data)
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response_200.append(response_200_item)
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return response_200
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if response.status_code == 422:
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response_422 = HTTPValidationError.from_dict(response.json())
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return response_422
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if client.raise_on_unexpected_status:
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raise errors.UnexpectedStatus(response.status_code, response.content)
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else:
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return None
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def _build_response(
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*, client: Union[AuthenticatedClient, Client], response: httpx.Response
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) -> Response[Union[HTTPValidationError, list["HpcRun"]]]:
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return Response(
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status_code=HTTPStatus(response.status_code),
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content=response.content,
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headers=response.headers,
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parsed=_parse_response(client=client, response=response),
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)
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def sync_detailed(
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*,
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client: Union[AuthenticatedClient, Client],
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body: list[int],
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) -> Response[Union[HTTPValidationError, list["HpcRun"]]]:
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"""Get simulation status records for a list of IDs
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Args:
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body (list[int]):
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Raises:
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errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
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httpx.TimeoutException: If the request takes longer than Client.timeout.
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Returns:
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Response[Union[HTTPValidationError, list['HpcRun']]]
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"""
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kwargs = _get_kwargs(
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body=body,
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)
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response = client.get_httpx_client().request(
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**kwargs,
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)
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return _build_response(client=client, response=response)
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def sync(
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*,
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client: Union[AuthenticatedClient, Client],
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body: list[int],
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) -> Optional[Union[HTTPValidationError, list["HpcRun"]]]:
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"""Get simulation status records for a list of IDs
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Args:
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body (list[int]):
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Raises:
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errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
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httpx.TimeoutException: If the request takes longer than Client.timeout.
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Returns:
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Union[HTTPValidationError, list['HpcRun']]
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"""
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return sync_detailed(
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client=client,
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body=body,
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).parsed
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async def asyncio_detailed(
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*,
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client: Union[AuthenticatedClient, Client],
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body: list[int],
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) -> Response[Union[HTTPValidationError, list["HpcRun"]]]:
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"""Get simulation status records for a list of IDs
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Args:
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Raises:
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errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
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httpx.TimeoutException: If the request takes longer than Client.timeout.
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Returns:
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Response[Union[HTTPValidationError, list['HpcRun']]]
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"""
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kwargs = _get_kwargs(
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body=body,
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response = await client.get_async_httpx_client().request(**kwargs)
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return _build_response(client=client, response=response)
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async def asyncio(
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) -> Optional[Union[HTTPValidationError, list["HpcRun"]]]:
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Args:
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Raises:
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errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
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Returns:
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"""
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return (
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145
|
interval_time (Union[Unset, float]): Default: 1.0.
|
|
146
|
+
batch_submission (Union[Unset, bool]): Default: False.
|
|
136
147
|
body (BodyRunSimulation):
|
|
137
148
|
|
|
138
149
|
Raises:
|
|
@@ -146,6 +157,7 @@ async def asyncio_detailed(
|
|
|
146
157
|
kwargs = _get_kwargs(
|
|
147
158
|
body=body,
|
|
148
159
|
interval_time=interval_time,
|
|
160
|
+
batch_submission=batch_submission,
|
|
149
161
|
)
|
|
150
162
|
|
|
151
163
|
response = await client.get_async_httpx_client().request(**kwargs)
|
|
@@ -158,11 +170,13 @@ async def asyncio(
|
|
|
158
170
|
client: Union[AuthenticatedClient, Client],
|
|
159
171
|
body: BodyRunSimulation,
|
|
160
172
|
interval_time: Union[Unset, float] = 1.0,
|
|
173
|
+
batch_submission: Union[Unset, bool] = False,
|
|
161
174
|
) -> Optional[Union[HTTPValidationError, SimulationExperiment]]:
|
|
162
175
|
"""Run a simulation
|
|
163
176
|
|
|
164
177
|
Args:
|
|
165
178
|
interval_time (Union[Unset, float]): Default: 1.0.
|
|
179
|
+
batch_submission (Union[Unset, bool]): Default: False.
|
|
166
180
|
body (BodyRunSimulation):
|
|
167
181
|
|
|
168
182
|
Raises:
|
|
@@ -178,5 +192,6 @@ async def asyncio(
|
|
|
178
192
|
client=client,
|
|
179
193
|
body=body,
|
|
180
194
|
interval_time=interval_time,
|
|
195
|
+
batch_submission=batch_submission,
|
|
181
196
|
)
|
|
182
197
|
).parsed
|
{compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/job_status.py
RENAMED
|
@@ -2,11 +2,16 @@ from enum import Enum
|
|
|
2
2
|
|
|
3
3
|
|
|
4
4
|
class JobStatus(str, Enum):
|
|
5
|
+
CANCELLED = "cancelled"
|
|
5
6
|
COMPLETED = "completed"
|
|
6
7
|
FAILED = "failed"
|
|
8
|
+
OUT_OF_MEMORY = "out_of_memory"
|
|
7
9
|
PENDING = "pending"
|
|
8
10
|
QUEUED = "queued"
|
|
9
11
|
RUNNING = "running"
|
|
12
|
+
SUSPENDED = "suspended"
|
|
13
|
+
TIMEOUT = "timeout"
|
|
14
|
+
UNKNOWN = "unknown"
|
|
10
15
|
WAITING = "waiting"
|
|
11
16
|
|
|
12
17
|
def __str__(self) -> str:
|
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
import asyncio
|
|
2
|
-
from typing import
|
|
2
|
+
from typing import Tuple
|
|
3
3
|
|
|
4
4
|
from compose_api_client import Client
|
|
5
5
|
from compose_api_client.api.results import (
|
|
@@ -57,7 +57,9 @@ async def async_call(
|
|
|
57
57
|
while current_status is None and num_loops < loops_to_wait:
|
|
58
58
|
print("Waiting for simulation to be submitted to slurm.")
|
|
59
59
|
await asyncio.sleep(sleep_interval)
|
|
60
|
-
current_status = await _get_current_status(
|
|
60
|
+
current_status = await _get_current_status(
|
|
61
|
+
client, sim_experiment.simulation_database_id
|
|
62
|
+
)
|
|
61
63
|
num_loops += 1
|
|
62
64
|
|
|
63
65
|
if current_status is None:
|
|
@@ -74,8 +76,14 @@ async def async_call(
|
|
|
74
76
|
)
|
|
75
77
|
num_loops += 1
|
|
76
78
|
|
|
77
|
-
|
|
78
|
-
|
|
79
|
+
incomplete_statuses = {
|
|
80
|
+
JobStatus.FAILED,
|
|
81
|
+
JobStatus.CANCELLED,
|
|
82
|
+
JobStatus.TIMEOUT,
|
|
83
|
+
JobStatus.OUT_OF_MEMORY,
|
|
84
|
+
}
|
|
85
|
+
if current_status.status in incomplete_statuses:
|
|
86
|
+
raise RuntimeError(f"Simulation stopped with status: {current_status}")
|
|
79
87
|
|
|
80
88
|
print(
|
|
81
89
|
f"Waited {num_loops * sleep_interval} seconds for simulation to complete. Current status: {current_status}"
|
|
@@ -93,7 +101,7 @@ async def async_call(
|
|
|
93
101
|
client=client, simulation_id=sim_experiment.simulation_database_id
|
|
94
102
|
)
|
|
95
103
|
|
|
96
|
-
print(
|
|
104
|
+
print("Simulation has completed.")
|
|
97
105
|
|
|
98
106
|
if results.status_code != 200:
|
|
99
107
|
raise RuntimeError(f"Could not get simulation results: {results}")
|
{compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client.egg-info/SOURCES.txt
RENAMED
|
@@ -23,6 +23,7 @@ compose_api_client/api/curated/run_tellurium.py
|
|
|
23
23
|
compose_api_client/api/results/__init__.py
|
|
24
24
|
compose_api_client/api/results/get_simulation_results_file.py
|
|
25
25
|
compose_api_client/api/results/get_simulation_status.py
|
|
26
|
+
compose_api_client/api/results/get_simulations_status_batch.py
|
|
26
27
|
compose_api_client/api/results/get_simulator_build_status.py
|
|
27
28
|
compose_api_client/api/simulation/__init__.py
|
|
28
29
|
compose_api_client/api/simulation/run_simulation.py
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
[project]
|
|
2
2
|
name = "compose-api-client"
|
|
3
|
-
version = "0.
|
|
3
|
+
version = "0.2.0"
|
|
4
4
|
description = "Add your description here"
|
|
5
5
|
readme = "README.md"
|
|
6
6
|
requires-python = ">=3.11"
|
|
@@ -14,4 +14,6 @@ dependencies = [
|
|
|
14
14
|
dev = [
|
|
15
15
|
"deptry>=0.23.0,<0.24",
|
|
16
16
|
"pre-commit>=3.4.0,<4",
|
|
17
|
+
"pytest",
|
|
18
|
+
"pytest-asyncio"
|
|
17
19
|
]
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/biosim_api/__init__.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
{compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/compute/__init__.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/curated/__init__.py
RENAMED
|
File without changes
|
{compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/curated/run_copasi.py
RENAMED
|
File without changes
|
|
File without changes
|
{compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/results/__init__.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/api/simulation/__init__.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/bi_graph_process.py
RENAMED
|
File without changes
|
{compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/bi_graph_step.py
RENAMED
|
File without changes
|
{compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/body_run_copasi.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/package_type.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/simulator_version.py
RENAMED
|
File without changes
|
{compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client/models/validation_error.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client.egg-info/requires.txt
RENAMED
|
File without changes
|
{compose_api_client-0.1.8 → compose_api_client-0.2.0}/compose_api_client.egg-info/top_level.txt
RENAMED
|
File without changes
|
|
File without changes
|